Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC073046.3 Gene 0 54.90 20.74 35.63 31.01 26.34 16.00 28.34 16.25 15.74 17.23 10.83 34.96 32.30 17.98 19.29 26.11 18.68 12.42 9.58 16.81 12.21 10.07 7.97 2 453103 Transcript 0 6.31 7.99 4.96 8.45 8.54 5.09 12.47 6.09 7.96 8.39 5.11 11.98 14.11 8.52 4.89 14.32 6.86 7.32 4.41 9.57 4.20 4.58 4.92 3 439192 Transcript 0 74.37 60.81 193.46 185.54 41.63 40.52 58.38 86.21 53.73 90.29 95.40 64.81 37.50 54.37 71.05 71.41 70.83 55.08 94.26 65.86 48.93 40.46 32.57 4 413452 Transcript 0 0.00 2.50 9.52 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 30.46 13.64 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 28.63 7.32 4.15 0.44 5.83 6.93 7.23 1.46 0.79 0.02 0.00 3.43 0.00 10.06 6.77 9.91 7.01 0.00 1.33 2.45 7.77 0.00 1.79 7 E1_Ac KnownBoundary 0 81.35 22.10 12.92 1.76 12.99 25.61 30.96 4.89 3.07 0.00 0.00 5.85 0.00 33.49 14.09 18.97 18.61 0.00 9.32 12.72 23.72 0.00 0.00 8 ER1c ExonRegion 0 13.36 3.65 21.72 0.86 6.31 5.07 7.43 1.35 2.81 1.23 2.17 17.72 4.36 11.15 12.58 10.47 15.29 1.73 0.73 7.27 9.10 0.00 0.61 9 E1_Da NovelBoundary 0 2.89 2.57 22.65 0.00 3.23 7.10 9.63 0.00 1.22 0.00 2.32 6.60 12.34 7.24 15.58 0.00 4.77 0.00 4.80 5.43 8.59 0.00 3.59 10 E1a_E2a KnownJunction 0 0.00 2.50 9.52 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 30.46 13.64 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1b_E2a KnownJunction 1 127.73 153.66 527.51 526.37 87.95 87.62 126.00 248.09 152.52 260.27 272.54 92.88 32.14 142.56 164.53 196.36 194.11 157.48 274.08 189.83 131.59 118.30 92.96 13 ER1d ExonRegion 1 0.00 0.63 21.92 3.51 3.91 7.55 7.59 1.06 1.52 1.28 1.26 15.99 16.23 3.81 22.43 0.23 5.46 0.21 2.82 2.78 8.65 0.00 1.24 14 Ix_AR1 ActiveIntronRegion 0 53.21 27.78 25.99 42.11 42.73 17.60 30.20 19.39 9.87 17.93 3.87 5.79 19.22 7.34 15.03 11.89 12.52 7.35 1.84 4.23 7.90 4.58 7.05 15 E2_Aa NovelBoundary 1 396.81 511.69 1211.78 1159.79 453.65 358.71 430.14 571.71 372.65 608.56 890.23 320.35 279.85 627.47 817.48 454.75 664.89 380.79 696.02 560.81 461.11 330.78 258.05 16 ER2a ExonRegion 0 169.41 42.87 100.21 92.87 66.98 32.79 47.92 40.69 28.78 35.24 19.58 57.68 58.01 20.46 38.25 32.04 28.21 18.45 19.74 20.73 19.35 23.61 10.87 17 E2_Da KnownBoundary 0 183.00 71.43 84.36 81.54 60.19 52.75 103.78 36.10 22.57 34.41 24.48 75.17 39.93 31.67 27.69 31.44 29.83 17.49 12.05 18.66 16.43 8.57 8.19 18 ER2b ExonRegion 1 95.38 28.16 30.95 26.72 33.04 26.39 41.56 9.47 7.14 9.32 12.40 85.55 64.13 16.74 26.17 17.64 12.92 7.55 5.89 4.95 6.56 3.08 3.51 19 E2_Db NovelBoundary 0 171.07 101.10 101.03 129.02 148.90 78.31 121.18 56.23 43.92 53.97 35.90 67.97 105.03 21.37 30.78 26.15 30.11 15.92 38.59 33.24 21.99 27.07 12.98 20 Ix Intron 0 68.79 29.57 35.40 47.87 46.86 23.84 35.58 21.85 22.51 22.78 12.14 15.96 17.78 14.61 22.39 22.26 15.63 12.36 10.88 12.66 8.98 16.98 11.64 21 Ix_AR1 ActiveIntronRegion 0 81.01 31.29 38.63 52.88 52.54 24.62 37.80 23.47 24.39 23.34 12.87 18.68 20.87 14.21 20.56 21.52 16.28 13.09 10.25 13.74 9.29 18.42 11.79 22 Ix_SR3 SilentIntronRegion 0 24.05 25.49 18.91 36.05 36.66 23.23 37.24 21.52 15.80 22.70 9.32 20.67 21.48 18.50 20.93 21.94 12.77 17.53 10.56 19.87 8.78 12.12 13.28 23 Ix_AR2 ActiveIntronRegion 0 8.14 6.97 7.06 18.93 17.15 18.36 23.81 11.05 11.74 13.15 4.97 21.38 31.33 13.92 8.39 16.28 19.02 7.02 6.84 11.10 4.87 6.99 10.67 24 Ix_AR1 ActiveIntronRegion 0 15.79 21.76 13.81 31.16 42.79 14.65 47.75 16.69 19.40 14.96 6.40 14.27 20.42 22.34 13.22 27.64 18.50 17.18 10.57 24.25 13.78 9.15 20.87 25 Ix Intron 0 30.05 20.49 15.68 31.62 33.20 22.98 41.23 24.16 19.19 26.41 18.91 50.44 55.27 27.07 25.26 42.70 36.10 22.13 18.20 24.47 15.34 13.33 21.89 26 Ix_AR2 ActiveIntronRegion 0 33.59 15.30 0.00 0.00 17.81 21.46 27.61 0.03 0.00 0.00 6.46 11.92 22.53 18.53 21.21 17.35 11.09 0.00 7.99 3.56 7.37 5.23 22.10 27 Ix_SR1 SilentIntronRegion 0 30.89 19.37 15.89 31.23 32.15 21.99 39.50 24.53 19.40 25.43 18.80 47.64 51.83 27.51 25.75 42.84 36.07 23.36 18.93 23.72 15.28 11.91 23.25 28 Ix_AR1 ActiveIntronRegion 0 22.90 30.62 18.30 43.22 45.52 31.16 58.33 27.86 22.73 41.12 23.17 82.35 90.60 26.20 22.79 48.69 43.19 18.71 15.42 35.87 18.08 26.43 11.60 29 E3_Aa NovelBoundary 0 25.71 20.59 22.29 47.95 11.97 8.35 56.40 43.42 25.29 45.99 14.06 56.72 84.41 22.72 33.01 26.75 41.14 16.33 7.44 49.15 2.53 33.37 11.18 30 ER3a ExonRegion 0 18.69 23.97 14.89 25.34 21.97 15.26 37.42 18.27 23.89 25.16 15.34 35.93 42.32 25.55 14.36 42.63 20.57 21.95 13.23 28.71 12.61 13.73 14.77