Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC007392.1 Gene 0 0.42 3.80 83.15 2.17 3.03 17.60 11.12 127.59 2.45 34.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.64 0.28 0.00 0.42 0.20 2 433432 Transcript 0 0.09 1.47 26.81 0.79 0.97 6.23 3.67 44.21 0.90 11.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.42 0.09 0.00 0.19 0.00 3 451698 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 432410 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.83 0.00 0.00 1.06 0.26 4.13 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 0.00 0.15 4.53 0.05 0.00 6.69 6.69 18.53 0.00 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 7 E1_Da NovelBoundary 0 0.00 0.00 11.74 0.00 0.00 5.45 4.20 57.71 1.79 12.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 Ix Intron 0 0.50 1.20 72.38 1.79 0.89 20.69 10.81 142.64 2.35 38.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.63 0.25 0.04 0.56 1.23 0.46 12 Ix_SR2 SilentIntronRegion 0 0.57 1.31 75.53 1.90 0.71 21.71 11.28 150.73 2.29 39.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.65 0.28 0.00 0.64 1.21 0.52 13 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 63.27 1.31 2.30 15.78 7.98 105.87 3.56 38.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.69 0.00 0.46 0.00 1.79 0.00 14 E2_Aa NovelBoundary 0 0.00 11.97 125.39 4.10 4.07 45.54 9.45 216.75 11.08 66.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.97 0.00 3.26 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.38 5.90 102.52 3.17 3.88 23.17 14.42 171.10 3.58 43.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.15 1.70 0.38 0.00 0.74 0.00 16 E2_Ab KnownBoundary 0 0.00 3.22 151.06 4.99 7.72 59.06 38.91 206.68 3.59 58.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.78 0.00 0.00 0.00 0.00 0.00 17 ER2b ExonRegion 0 1.10 3.98 129.58 1.69 5.43 27.48 14.27 177.21 2.40 48.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.91 0.00 0.00 0.00 0.54 0.76 18 E2_Da NovelBoundary 0 0.00 0.00 221.90 0.00 7.89 39.13 26.41 273.84 4.98 65.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.94 0.00 0.00 0.00 0.00 0.00 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 Ix Intron 0 0.50 4.93 128.43 3.82 3.13 20.05 16.37 202.80 3.67 66.71 0.00 0.09 0.00 0.00 0.00 0.00 0.00 7.41 0.48 0.23 0.48 0.77 0.38 21 Ix_AR1 ActiveIntronRegion 0 0.43 6.14 158.65 2.03 6.03 32.70 18.98 203.90 2.93 61.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.88 0.65 0.00 0.25 1.00 0.60 22 Ix_SR1 SilentIntronRegion 0 0.52 4.62 120.62 4.32 2.36 16.69 15.70 203.03 3.87 68.34 0.00 0.12 0.00 0.00 0.00 0.00 0.00 7.57 0.44 0.29 0.54 0.71 0.32 23 E3_Aa NovelBoundary 0 0.00 6.12 77.26 0.00 0.00 18.91 14.35 91.39 1.62 18.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 24 ER3a ExonRegion 0 0.00 3.10 60.47 3.06 1.02 6.01 7.64 88.98 2.80 29.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.96 0.00 0.81 0.00 0.00 0.00 25 E3_Da KnownBoundary 0 0.00 0.00 6.33 0.00 0.00 2.61 0.00 4.15 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 26 E3_Db KnownBoundary 0 0.00 0.00 3.25 0.00 0.00 0.00 1.99 6.37 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3b ExonRegion 0 0.00 0.00 11.03 0.00 0.00 3.67 0.66 4.75 0.00 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 28 ER3c ExonRegion 0 0.00 0.00 3.90 0.00 0.00 0.67 0.00 1.62 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00