Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC078941.1 Gene 0 0.46 2.64 15.03 10.92 13.71 7.82 9.28 17.76 11.52 17.82 0.07 0.00 0.07 0.06 0.14 0.00 0.00 1.78 0.52 1.48 0.16 0.57 0.05 2 433133 Transcript 0 0.13 0.18 2.80 2.56 9.24 3.90 5.80 3.33 2.89 4.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.38 0.31 0.00 0.00 0.00 3 414404 Transcript 0 0.78 6.22 53.97 19.74 25.09 12.83 13.80 35.96 10.48 44.09 0.00 0.00 0.00 0.20 0.47 0.00 0.00 2.88 0.59 2.45 0.00 2.18 0.00 4 447453 Transcript 0 0.19 0.76 3.29 7.94 5.66 3.69 4.86 8.77 4.04 7.79 0.18 0.00 0.35 0.00 0.00 0.00 0.00 1.39 0.01 2.04 0.24 0.57 0.00 5 ER1a ExonRegion 0 1.13 0.00 16.64 4.18 66.89 15.22 35.29 11.09 4.91 8.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 3.19 0.00 0.00 0.00 0.00 6 E1_Ab KnownBoundary 0 3.78 0.00 40.24 10.69 123.09 30.32 74.33 37.71 9.92 22.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 3.76 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 1.21 1.49 23.43 4.62 54.39 14.15 33.40 25.40 7.31 22.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.03 0.52 0.00 0.22 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 3.03 12.92 1.63 15.37 5.22 3.27 18.85 8.62 25.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.79 0.00 0.00 0.00 0.00 0.00 9 Ix Intron 0 0.00 0.71 3.63 1.66 5.32 8.37 19.05 16.57 3.88 11.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.75 0.00 0.00 0.00 10 Ix_SR1 SilentIntronRegion 0 0.00 0.72 3.64 1.67 5.35 8.40 19.13 16.65 3.89 11.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.75 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 3.25 18.18 2.87 10.56 8.30 3.15 18.95 7.70 29.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.42 0.00 1.66 2.08 0.00 0.00 12 E2a_E3a KnownJunction 0 0.00 3.35 29.01 7.82 22.24 13.06 4.50 21.40 12.79 31.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 6.52 0.00 0.00 0.00 13 ER3a ExonRegion 0 0.00 6.00 38.98 10.25 19.65 17.01 11.16 19.16 7.47 37.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.53 0.00 2.27 1.71 1.37 0.00 14 E3a_E4b KnownJunction 0 0.00 8.55 45.00 10.12 27.76 2.44 0.00 17.00 6.66 42.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.29 0.00 0.00 0.00 2.69 0.00 15 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E4_Aa NovelBoundary 0 0.00 0.00 1.48 13.82 7.89 9.54 6.76 16.31 10.19 17.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.07 0.00 0.00 0.00 17 ER4a ExonRegion 0 0.38 1.51 6.57 14.17 7.00 7.39 9.72 15.99 5.19 14.57 0.35 0.00 0.70 0.00 0.00 0.00 0.00 1.03 0.02 4.09 0.48 1.14 0.00 18 E4_Ab KnownBoundary 0 0.00 0.00 12.89 16.25 11.80 7.61 14.97 23.99 3.04 11.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 2.47 0.00 0.00 19 ER4b ExonRegion 0 0.83 4.88 57.08 19.56 51.07 31.09 31.97 62.02 20.66 51.36 0.76 0.00 0.00 0.00 0.00 0.00 0.00 12.98 3.70 3.11 0.70 1.01 1.15 20 E4_Da NovelBoundary 0 0.00 3.35 23.42 9.29 20.80 16.69 40.67 22.30 9.09 19.64 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 21 E4a_E5a KnownJunction 0 0.00 0.00 46.15 21.94 14.94 20.61 24.78 34.46 6.77 34.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 22 E4a_E9a KnownJunction 0 0.00 0.00 0.00 1.70 4.33 0.00 0.00 1.56 2.89 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 23 Ix Intron 0 1.09 3.35 25.69 9.94 15.44 4.53 12.34 25.48 12.90 20.16 0.00 0.18 0.20 0.00 0.57 0.00 0.00 2.94 0.82 0.77 0.00 1.07 0.45 24 Ix_SR1 SilentIntronRegion 0 0.55 2.93 20.90 7.47 16.39 3.02 10.69 19.95 9.48 18.19 0.00 0.47 0.51 0.00 0.00 0.00 0.00 3.02 0.73 1.12 0.00 1.09 0.00 25 Ix_AR1 ActiveIntronRegion 0 1.44 3.63 28.83 11.55 14.85 5.52 13.43 29.10 15.13 21.48 0.00 0.00 0.00 0.00 0.94 0.00 0.00 2.89 0.88 0.54 0.00 1.06 0.75 26 E5_Aa NovelBoundary 0 0.00 8.09 41.07 15.05 41.00 4.94 11.97 40.25 19.47 22.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 4.80 3.26 0.00 3.12 0.00 27 ER5a ExonRegion 0 2.34 10.12 70.75 27.17 32.57 15.43 16.63 56.43 18.02 55.83 0.00 0.00 0.00 0.60 1.41 0.00 0.00 0.36 1.76 4.16 0.00 3.84 0.00 28 E5_Da NovelBoundary 0 0.00 0.00 94.32 43.62 38.29 28.05 13.78 79.40 27.46 65.84 0.00 0.00 0.00 0.00 5.32 0.00 0.00 2.11 3.48 0.00 0.00 3.12 0.00 29 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E6_Da NovelBoundary 0 10.52 0.00 11.53 9.09 3.40 0.00 13.51 7.39 5.32 3.49 2.16 0.00 0.00 0.00 5.69 8.20 8.23 9.49 12.42 6.07 0.00 0.00 0.00 31 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER7a ExonRegion 0 0.00 0.00 0.02 2.05 2.60 2.72 2.44 3.83 1.50 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 33 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 1.62 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER8a ExonRegion 0 0.00 0.00 1.55 1.53 2.85 1.73 2.85 3.42 4.09 10.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 35 E8a_E9a KnownJunction 0 0.00 0.00 2.96 5.56 3.65 11.58 2.25 2.30 1.71 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER9a ExonRegion 0 0.74 1.12 6.68 6.90 9.28 12.63 5.10 12.30 16.71 15.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 37 E9_Da NovelBoundary 0 0.00 0.00 10.76 6.89 0.00 2.61 1.63 0.00 13.86 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 38 E9a_E10a KnownJunction 0 0.00 9.34 9.40 3.63 10.19 9.31 3.80 13.31 14.18 13.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER10a ExonRegion 0 0.56 2.86 7.92 5.81 10.79 6.59 7.12 14.26 13.68 14.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.56 0.00 0.00 0.00 40 E10_Da KnownBoundary 0 0.00 2.63 3.81 6.03 15.20 8.63 1.55 20.45 12.79 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER10b ExonRegion 0 0.08 1.66 4.01 9.72 7.14 3.86 5.87 9.30 12.14 8.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.25 0.66 0.00 0.00 0.00