Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC007392.2 Gene 0 1.13 1.38 19.93 0.96 3.64 10.90 8.58 36.57 1.63 13.05 0.11 0.53 0.67 0.54 0.96 0.35 0.29 6.63 0.28 0.69 0.98 1.11 1.13 2 433396 Transcript 0 0.10 0.19 2.54 0.29 5.02 4.73 4.13 5.34 1.68 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.30 0.20 0.72 0.86 0.69 3 423168 Transcript 0 0.00 0.00 2.97 0.00 0.00 0.75 0.00 1.06 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 4 443420 Transcript 0 0.00 0.48 11.76 0.00 0.00 1.65 3.71 42.48 0.92 17.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 2.30 0.00 5 435389 Transcript 0 0.00 0.00 2.66 0.00 0.00 0.00 0.00 4.19 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 6 428590 Transcript 0 0.02 0.23 0.99 0.44 0.00 0.21 1.01 2.23 0.00 0.92 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.31 0.00 0.01 0.00 0.00 0.01 7 412944 Transcript 0 0.01 0.24 4.68 0.47 0.00 3.21 0.80 12.54 0.21 5.17 0.02 0.04 0.15 2.28 0.05 0.00 0.00 1.28 0.00 0.00 0.26 0.00 0.37 8 IG10 Intergenic 0 2.65 10.53 29.55 11.57 33.71 41.70 36.39 46.68 18.90 32.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 1.51 2.75 2.57 11.15 4.56 9 IG10_AR1 ActiveIntergenicRegion 0 2.62 13.01 26.70 14.08 39.06 45.72 39.91 51.89 21.74 38.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 2.38 3.38 0.47 14.74 4.20 10 IG10_SR1 SilentIntergenicRegion 0 4.23 8.61 12.25 6.33 15.42 34.52 19.24 28.47 5.38 6.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 0.00 2.20 8.58 8.12 11 IG10_AR2 ActiveIntergenicRegion 0 3.10 9.06 36.36 10.77 32.73 41.58 37.50 47.47 19.01 32.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.43 0.93 2.46 5.03 9.10 5.05 12 IG10_SR2 SilentIntergenicRegion 0 0.11 4.99 12.14 2.73 12.36 21.41 13.98 16.74 4.82 7.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.32 1.18 2.50 3.40 13 ER1a ExonRegion 0 0.79 1.53 13.70 2.28 40.06 37.82 29.79 25.74 12.36 9.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.63 2.39 1.60 5.77 3.13 5.51 14 E1_Da NovelBoundary 0 0.00 0.00 26.76 5.53 14.26 21.86 6.49 61.61 22.95 17.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.63 13.08 3.13 8.77 7.72 12.63 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I1_SR1 SilentIntronRegion 0 0.24 1.34 7.41 1.90 6.59 8.46 7.59 16.92 9.87 13.08 0.00 0.00 0.00 0.00 0.02 0.00 0.00 12.97 1.33 1.33 2.09 1.45 1.94 17 I1_AR1 ActiveIntronRegion 0 0.79 4.83 6.17 2.19 9.64 6.87 8.66 20.59 15.44 11.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.04 0.33 0.22 0.23 2.59 1.22 18 I1_AR2 ActiveIntronRegion 0 0.61 1.98 10.67 3.13 15.92 12.50 11.44 40.15 15.60 19.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 1.14 0.00 4.86 1.92 19 I1_SR3 SilentIntronRegion 0 0.55 3.16 9.85 2.65 16.08 9.85 17.52 27.18 14.47 16.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.42 0.00 1.71 2.82 20 ER2a ExonRegion 0 0.00 0.00 1.48 0.00 0.11 0.00 2.09 1.64 1.06 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.13 0.52 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4a ExonRegion 0 0.00 0.00 0.52 0.00 0.00 0.00 0.99 5.27 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 25 E4a_E6d KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 9.57 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 26 ER5a ExonRegion 0 0.00 0.00 2.27 0.00 0.00 1.51 0.00 2.12 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 27 E5a_E6d KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 28 E6_Ac NovelBoundary 0 0.00 0.00 13.07 0.00 0.00 11.92 8.04 10.84 0.00 13.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER6a ExonRegion 0 0.00 0.00 0.61 0.00 0.00 2.75 1.65 1.73 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER6b ExonRegion 0 0.00 1.78 1.23 0.00 0.00 5.50 3.97 4.75 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER6c ExonRegion 0 0.00 4.29 14.63 1.03 0.00 16.34 11.80 56.92 0.70 21.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.04 0.00 0.00 0.00 3.26 0.00 32 E6_Da KnownBoundary 0 0.00 0.00 4.85 0.00 0.00 5.79 4.50 12.94 1.45 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 33 E6a_E6d KnownJunction 0 0.00 0.00 5.32 0.00 0.00 0.00 0.00 5.79 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E6_Db KnownBoundary 0 0.00 3.35 5.09 0.00 0.00 5.79 0.00 11.50 0.00 10.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 35 E6b_E6d KnownJunction 0 0.00 0.00 8.57 0.00 0.00 0.00 0.00 3.57 0.00 4.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6d ExonRegion 0 0.00 2.03 13.13 0.00 0.00 5.50 2.65 24.45 1.24 19.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 37 ER6e ExonRegion 0 0.00 0.48 11.76 0.00 0.00 1.65 3.71 42.48 0.92 17.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 2.30 0.00 38 E6_Ad KnownBoundary 0 0.00 0.00 9.46 0.00 0.00 5.11 5.56 41.20 0.00 13.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 0.00 0.00 0.00 0.00 0.00 39 ER6f ExonRegion 0 0.00 0.80 17.64 0.45 0.00 8.38 5.94 37.72 0.00 10.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.49 0.00 40 E6_Dc NovelBoundary 0 0.00 2.76 10.53 0.00 0.00 4.88 8.26 33.56 0.00 16.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 41 E6c_E7a KnownJunction 0 0.00 3.35 9.93 1.60 0.00 0.00 0.00 21.77 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 42 E6c_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 I6 Intron 0 0.03 0.67 29.10 0.45 0.48 10.76 10.30 68.90 1.29 24.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.10 0.16 0.46 0.75 0.13 44 I6_SR1 SilentIntronRegion 0 0.00 0.57 19.14 0.34 0.00 5.20 7.97 51.56 1.01 20.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.25 0.62 0.00 45 I6_AR1 ActiveIntronRegion 0 0.00 0.00 25.49 0.00 0.00 10.73 9.10 60.71 0.19 19.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.17 0.54 0.29 0.24 46 I6_SR2 SilentIntronRegion 0 0.00 0.52 31.35 0.64 0.55 13.35 11.42 81.39 2.21 29.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.33 0.44 0.58 1.17 0.15 47 I6_AR2 ActiveIntronRegion 0 0.00 1.76 38.62 0.75 1.35 9.13 12.12 68.55 1.55 27.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 0.00 0.75 0.60 0.28 48 I6_SR3 SilentIntronRegion 0 0.00 0.00 50.91 0.87 2.68 24.17 14.32 62.80 1.24 22.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.07 1.01 0.00 49 I6_AR3 ActiveIntronRegion 0 0.33 0.95 39.31 0.55 0.89 19.72 12.39 96.19 0.97 26.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.04 0.00 0.00 0.00 0.88 0.00 50 E7_Aa NovelBoundary 0 0.00 0.00 52.27 1.70 0.00 32.94 4.50 87.98 3.33 26.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.84 0.00 0.00 0.00 0.00 0.00 51 ER7a ExonRegion 0 0.73 2.33 69.68 2.13 0.92 23.88 12.95 111.54 1.78 38.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.07 0.00 0.83 1.28 1.51 0.25 52 E7_Da KnownBoundary 0 0.00 3.03 80.96 1.96 3.65 37.31 12.90 107.90 0.00 30.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.63 0.00 0.00 0.00 5.69 4.35 53 ER7b ExonRegion 0 1.53 1.83 94.81 1.91 0.80 32.41 15.19 122.46 1.61 43.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.57 0.00 0.00 0.99 5.37 3.38 54 E7_Db KnownBoundary 0 5.93 0.00 78.26 3.00 0.00 33.39 17.93 92.50 3.30 43.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.42 0.00 0.00 3.03 5.94 3.76 55 ER7c ExonRegion 0 2.34 1.36 44.81 2.22 0.00 15.61 12.93 57.27 1.63 16.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.67 0.00 0.00 2.41 1.73 1.31 56 E7_Dc NovelBoundary 0 0.00 0.00 50.21 1.40 0.00 5.00 5.26 50.15 0.00 28.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 2.53 0.00 0.00 57 E7_Dd NovelBoundary 0 0.00 0.00 23.65 1.27 0.00 14.71 1.77 59.06 0.00 11.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 2.41 0.00 0.00 58 ER7d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 59 I7 Intron 0 0.44 1.91 98.22 1.70 0.84 16.68 16.62 107.65 1.80 36.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.16 0.44 0.00 0.38 0.58 0.20 60 I7_AR1 ActiveIntronRegion 0 0.53 2.31 108.72 1.97 1.01 18.92 18.68 120.81 2.02 41.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.79 0.54 0.00 0.46 0.61 0.25 61 I7_SR1 SilentIntronRegion 0 0.00 0.00 48.14 0.41 0.00 6.00 6.76 44.76 0.75 13.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.43 0.00 62 E8_Aa NovelBoundary 0 0.00 3.35 176.66 2.06 0.00 12.04 34.54 193.17 2.89 60.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 0.00 0.00 0.00 0.00 63 ER8a ExonRegion 0 0.00 0.00 0.13 0.00 0.00 0.00 9.05 3.36 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 1.94 0.00 0.00 0.00 64 E8_Da NovelBoundary 0 0.00 2.83 237.22 2.06 0.00 25.55 13.65 281.81 5.70 52.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 0.00 0.00 0.00 0.00 0.00 65 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 Ix Intron 0 0.50 4.93 128.43 3.82 3.13 20.05 16.37 202.80 3.67 66.71 0.00 0.09 0.00 0.00 0.00 0.00 0.00 7.41 0.48 0.23 0.48 0.77 0.38 67 Ix_SR1 SilentIntronRegion 0 0.52 4.62 120.62 4.32 2.36 16.69 15.70 203.03 3.87 68.34 0.00 0.12 0.00 0.00 0.00 0.00 0.00 7.57 0.44 0.29 0.54 0.71 0.32 68 Ix_AR1 ActiveIntronRegion 0 0.43 6.14 158.65 2.03 6.03 32.70 18.98 203.90 2.93 61.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.88 0.65 0.00 0.25 1.00 0.60 69 Ix Intron 0 0.50 1.20 72.38 1.79 0.89 20.69 10.81 142.64 2.35 38.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.63 0.25 0.04 0.56 1.23 0.46 70 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 63.27 1.31 2.30 15.78 7.98 105.87 3.56 38.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.69 0.00 0.46 0.00 1.79 0.00 71 Ix_SR2 SilentIntronRegion 0 0.57 1.31 75.53 1.90 0.71 21.71 11.28 150.73 2.29 39.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.65 0.28 0.00 0.64 1.21 0.52 72 ER9a ExonRegion 0 15.09 6.72 0.99 0.00 5.93 9.05 23.33 5.97 0.74 0.95 2.06 9.79 11.88 9.94 17.63 6.62 5.49 1.99 1.77 6.98 2.44 0.00 8.01 73 E9_Da NovelBoundary 0 501.50 479.13 380.35 406.51 420.54 323.17 497.85 357.22 402.40 312.03 140.56 176.01 136.52 108.54 205.08 417.16 261.80 565.84 273.23 541.44 162.04 123.81 390.28 74 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER10a ExonRegion 0 0.04 0.46 1.97 0.88 0.00 0.42 2.03 4.45 0.00 1.85 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.62 0.00 0.03 0.00 0.00 0.01 77 I10_SR4 SilentIntronRegion 0 0.00 0.09 4.68 0.40 0.29 4.93 2.17 15.73 0.64 6.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.19 0.09 0.00 78 E11_Aa NovelBoundary 0 0.00 0.00 14.10 2.06 0.00 8.12 7.51 29.78 1.62 19.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 79 ER11a ExonRegion 0 0.03 0.47 9.37 0.95 0.00 6.42 1.60 25.08 0.43 10.35 0.04 0.08 0.30 0.10 0.09 0.00 0.00 2.56 0.00 0.01 0.51 0.00 0.74