Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC018462.2 Gene 0 10.56 6.76 6.48 10.08 8.08 3.61 12.88 5.93 3.21 3.93 19.12 24.46 22.27 4.36 5.77 9.47 5.86 1.89 2.91 4.95 1.77 1.04 4.15 2 421323 Transcript 0 1.47 0.41 2.04 2.00 2.53 0.75 4.00 0.97 0.16 0.78 16.96 17.94 16.65 3.37 2.28 4.53 2.37 0.40 1.13 1.10 0.00 0.18 0.90 3 425966 Transcript 0 2.80 1.94 1.42 2.35 3.94 3.13 5.57 1.44 1.01 1.18 19.45 11.05 14.44 4.66 3.23 5.32 2.60 0.69 2.08 2.44 0.99 0.61 1.40 4 ER1a ExonRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.54 0.41 3.23 2.74 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 20.74 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E2_Aa NovelBoundary 1 1062.48 2195.73 10039.77 8014.17 460.10 567.46 684.52 3896.04 1619.08 3879.40 30067.93 633.21 383.42 7223.89 5668.84 8707.54 35209.68 2501.63 21616.90 5092.73 10774.90 3019.55 3698.44 7 ER2a ExonRegion 0 0.23 0.61 0.68 2.67 0.06 0.03 0.15 0.05 0.00 0.04 28.24 9.66 6.01 5.46 1.80 2.69 1.10 0.00 0.13 0.83 0.00 0.00 0.00 8 E2_Da NovelBoundary 0 7.41 9.87 1.80 3.86 0.00 5.56 22.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 5.02 4.71 9.78 9.45 3.06 0.00 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 12.60 6.33 5.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2a_E4a KnownJunction 0 0.00 0.00 1.45 2.06 0.00 0.00 0.00 0.00 0.00 0.00 44.64 42.61 35.22 9.18 0.00 7.60 3.65 0.00 3.58 0.00 0.00 0.00 0.00 11 Ix Intron 0 13.81 12.17 20.68 36.18 27.06 48.06 38.54 18.45 25.78 24.04 7.67 21.64 22.43 8.61 8.04 11.43 10.99 10.55 11.55 17.83 6.85 9.63 10.57 12 Ix_SR3 SilentIntronRegion 0 11.85 10.46 17.50 29.31 22.90 47.77 31.85 17.60 25.83 23.05 8.06 14.33 14.97 8.20 7.69 13.07 11.00 13.56 12.49 16.24 7.86 7.53 11.24 13 Ix_AR2 ActiveIntronRegion 0 7.71 13.16 9.81 31.52 27.78 40.39 38.39 15.18 19.06 23.57 9.08 29.46 27.74 10.49 4.08 11.56 8.19 7.02 6.95 13.60 6.24 8.56 7.98 14 Ix_SR2 SilentIntronRegion 0 21.80 22.23 29.33 52.65 32.18 52.64 54.52 23.12 33.87 23.05 7.54 39.12 40.79 10.86 7.76 10.34 13.58 10.01 11.83 25.04 7.41 12.22 9.95 15 Ix_AR1 ActiveIntronRegion 0 14.22 9.71 18.87 36.26 27.82 46.04 35.99 20.25 21.27 24.54 6.14 24.21 29.18 6.55 7.72 5.86 6.57 5.75 11.34 14.92 1.93 15.58 7.99 16 Ix_SR1 SilentIntronRegion 0 15.62 10.92 27.51 44.10 33.18 49.59 45.83 18.10 25.11 26.93 7.00 24.63 24.39 8.43 10.54 10.54 12.25 7.07 10.85 19.96 6.41 10.90 11.36 17 E3_Aa NovelBoundary 0 37.27 3.35 30.10 63.16 41.68 58.26 58.07 32.74 28.85 29.84 12.00 5.55 36.20 14.19 13.85 12.13 16.55 10.11 4.71 15.21 18.10 12.12 23.05 18 ER3a ExonRegion 0 4.89 3.33 0.08 0.11 17.55 16.47 22.53 0.00 0.00 0.00 10.39 10.65 25.91 11.16 5.28 7.02 0.00 1.54 13.32 8.51 0.00 1.74 4.67 19 E3_Da NovelBoundary 0 44.30 15.52 15.64 39.12 40.92 25.44 67.22 19.80 9.32 17.89 9.42 35.41 38.80 15.19 4.45 4.19 9.16 14.63 9.04 11.95 8.15 12.43 8.71 20 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 Ix Intron 0 18.29 23.83 29.33 41.13 38.87 48.41 44.08 27.59 29.37 22.84 9.73 29.42 26.31 7.54 6.66 10.56 9.80 8.68 12.33 17.15 7.36 10.61 17.13 22 Ix_AR2 ActiveIntronRegion 0 19.99 25.54 31.45 48.56 40.40 51.96 47.28 31.50 31.66 25.59 11.29 33.65 28.55 8.60 7.21 11.32 11.12 9.38 12.87 19.20 8.54 12.02 19.10 23 Ix_SR1 SilentIntronRegion 0 13.97 20.04 24.66 17.85 37.43 40.49 36.98 15.98 24.05 15.05 5.00 16.84 20.82 4.38 5.32 8.87 5.95 7.02 11.65 11.34 3.74 6.47 11.66 24 Ix Intron 0 4.74 1.70 5.75 6.28 4.95 2.35 7.33 3.83 3.33 2.61 4.07 14.22 18.41 1.52 3.75 4.15 4.12 1.43 1.99 1.53 1.18 1.23 1.71 25 Ix_SR2 SilentIntronRegion 0 4.69 2.05 4.83 5.91 4.77 2.86 5.52 2.63 2.58 2.03 4.10 14.18 15.07 1.62 3.70 3.39 3.99 1.27 1.91 1.38 1.28 1.86 1.58 26 Ix_AR1 ActiveIntronRegion 0 3.71 1.68 8.40 6.31 4.99 3.48 6.79 1.84 4.56 1.17 3.06 18.12 27.75 1.17 2.45 4.70 1.19 1.35 0.00 2.07 0.32 0.98 2.15 27 Ix_SR1 SilentIntronRegion 0 4.85 1.51 6.07 6.48 5.05 1.98 8.39 4.66 3.66 3.05 4.12 13.95 19.57 1.49 3.88 4.54 4.41 1.53 2.18 1.58 1.19 0.89 1.75 28 E4_Ab NovelBoundary 0 6.89 0.00 3.96 7.66 0.00 0.00 4.33 2.55 3.39 1.10 26.16 0.00 0.00 0.00 4.45 3.42 7.76 0.00 3.76 5.43 2.66 0.00 0.00 29 ER4a ExonRegion 0 2.12 2.44 4.90 5.72 0.54 2.57 6.09 1.73 0.00 1.15 54.12 40.70 36.58 11.04 5.22 7.13 5.28 0.00 3.19 4.26 0.00 0.00 1.17 30 ER4b ExonRegion 0 7.23 2.96 7.68 4.24 8.19 1.91 7.22 6.33 0.00 2.46 69.22 36.78 34.46 13.75 5.97 7.21 12.13 0.00 2.74 5.01 2.12 1.07 3.05 31 E4_Da NovelBoundary 1 14.97 2.96 14.67 7.99 16.55 4.83 10.16 10.80 13.66 6.07 12.27 25.81 67.37 6.71 8.90 8.46 18.05 2.20 4.42 9.46 2.66 0.00 7.85 32 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.74 5.85 13.15 14.72 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 33 Ix Intron 1 7.07 2.50 6.74 5.36 4.71 1.29 9.43 6.57 5.50 6.02 4.08 30.24 33.73 4.81 4.65 8.63 7.26 2.91 1.40 3.18 2.33 2.75 1.81 34 Ix_SR1 SilentIntronRegion 0 7.08 2.51 6.76 5.37 4.71 1.29 9.45 6.58 5.51 6.03 4.09 30.29 33.79 4.82 4.66 8.64 7.26 2.91 1.40 3.19 2.33 2.75 1.81 35 E5_Aa NovelBoundary 0 7.41 2.83 12.51 6.79 10.78 2.44 10.11 8.34 10.62 5.64 4.53 11.85 27.60 2.47 0.00 4.02 12.34 0.00 0.00 2.43 0.00 3.12 0.00 36 ER5a ExonRegion 0 1.30 3.89 0.08 2.56 0.00 1.17 4.30 1.71 0.00 0.06 23.24 28.52 38.05 5.14 4.61 5.57 0.87 0.00 0.12 2.66 0.14 1.30 1.87 37 E5_Da NovelBoundary 1 6.00 3.16 8.34 7.29 4.33 2.90 7.15 16.63 3.91 7.04 11.58 5.55 52.92 0.00 10.38 7.78 13.65 1.74 0.00 3.26 10.13 0.00 4.27 38 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.53 6.15 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E5a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 Ix Intron 0 4.12 1.71 3.59 4.83 3.78 1.97 8.35 3.45 3.64 2.88 11.15 24.38 34.29 3.50 3.49 6.10 5.26 1.54 1.48 2.80 1.45 0.86 2.81 41 Ix_SR1 SilentIntronRegion 0 4.12 1.71 3.59 4.83 3.78 1.97 8.35 3.45 3.64 2.88 11.15 24.38 34.30 3.50 3.49 6.10 5.26 1.54 1.48 2.80 1.45 0.86 2.81 42 E6_Aa NovelBoundary 0 13.71 2.76 3.87 10.55 6.96 0.00 27.34 18.81 16.20 9.86 7.53 0.00 18.99 8.01 4.45 3.85 7.76 6.22 14.40 23.33 5.44 8.02 31.93 43 ER6a ExonRegion 0 0.71 2.03 1.83 3.38 3.57 2.45 5.74 1.68 2.45 3.39 43.74 20.29 14.68 10.21 7.87 9.15 9.97 1.51 1.06 4.26 4.41 1.39 0.98 44 E6_Da NovelBoundary 0 0.00 5.85 0.00 5.43 3.14 8.35 27.43 9.16 5.53 5.29 4.47 12.30 13.64 0.00 0.00 4.02 14.03 0.00 0.00 5.62 6.05 3.12 0.00 45 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.70 0.00 25.81 0.00 4.57 11.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 Ix Intron 0 1.14 1.50 1.35 3.75 1.79 2.05 6.34 2.18 2.39 2.55 22.46 19.75 22.91 4.64 2.43 6.62 6.29 0.97 2.35 3.17 1.50 0.84 3.01 47 Ix_SR1 SilentIntronRegion 0 1.14 1.50 1.35 3.75 1.79 2.05 6.34 2.18 2.39 2.55 22.47 19.75 22.91 4.64 2.44 6.63 6.30 0.97 2.35 3.17 1.50 0.84 3.01 48 E7_Aa NovelBoundary 0 3.56 5.72 1.30 9.76 0.00 0.00 5.96 0.00 4.80 3.98 27.38 25.66 30.03 12.07 4.45 16.15 13.74 0.00 9.04 0.00 0.00 0.00 3.59 49 ER7a ExonRegion 0 1.07 0.12 0.02 0.07 2.73 4.63 1.97 1.30 0.93 0.82 51.15 18.43 24.66 13.80 4.28 7.30 6.60 0.04 0.00 2.15 2.23 1.09 0.06 50 E7_Da NovelBoundary 0 6.30 3.16 1.83 7.19 0.00 0.00 12.59 0.00 3.21 3.92 51.91 24.91 39.93 17.01 9.64 4.36 13.18 2.07 0.00 17.64 2.41 0.00 8.71 51 E7a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 Ix Intron 0 2.90 1.45 1.64 5.19 5.85 4.49 14.66 3.80 2.86 2.39 22.41 18.30 25.79 3.91 4.17 4.23 4.79 0.68 1.76 3.20 0.93 1.43 2.32 53 Ix_SR1 SilentIntronRegion 0 2.90 1.45 1.64 5.20 5.86 4.50 14.67 3.80 2.86 2.39 22.44 18.32 25.82 3.91 4.18 4.23 4.79 0.68 1.76 3.20 0.93 1.43 2.32 54 E8_Aa NovelBoundary 0 2.82 5.85 9.96 11.02 9.68 7.55 22.30 2.55 6.71 1.67 2.47 0.00 21.91 2.59 4.45 3.50 0.00 0.00 0.00 0.00 0.00 2.33 0.00 55 ER8a ExonRegion 0 0.08 0.00 0.45 0.00 4.76 0.00 6.18 0.16 0.00 0.00 0.00 5.77 4.17 0.00 2.04 3.41 0.24 0.00 0.00 0.20 0.00 0.00 2.61 56 E8_Da NovelBoundary 1 0.00 0.00 3.43 11.55 8.57 11.98 28.53 6.49 7.38 3.04 2.53 0.00 38.15 2.47 10.75 4.36 0.00 1.66 0.00 3.00 0.00 0.00 0.00 57 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 Ix Intron 0 3.93 2.36 5.24 8.66 5.59 3.68 11.37 5.60 5.36 4.18 2.69 13.51 11.98 1.81 4.41 6.33 4.32 1.92 1.41 3.01 1.44 0.79 3.28 59 Ix_SR2 SilentIntronRegion 0 3.88 2.65 5.64 8.24 5.37 3.81 11.45 5.53 5.38 4.17 2.43 13.11 11.30 1.72 4.49 7.03 4.78 2.04 1.46 3.24 1.65 0.86 3.55 60 Ix_AR1 ActiveIntronRegion 0 4.87 0.40 2.62 13.23 8.34 3.06 12.27 6.57 5.84 4.91 5.02 18.69 17.94 2.79 4.50 1.76 1.31 1.27 1.26 1.66 0.00 0.41 1.74 61 E9_Aa NovelBoundary 0 20.60 6.71 21.50 26.44 12.39 0.00 21.73 13.55 21.67 11.09 2.47 24.76 0.00 2.12 12.61 4.27 8.79 4.06 0.00 0.00 5.07 2.88 7.94 62 ER9a ExonRegion 1 6.61 0.00 5.45 4.23 9.91 1.91 11.73 3.93 0.96 3.56 3.02 18.55 23.93 0.00 6.39 9.04 5.02 2.39 0.00 2.15 0.00 1.08 1.62 63 E9_Da NovelBoundary 1 10.59 0.00 21.08 32.90 7.56 16.69 56.17 20.13 14.53 6.74 2.68 25.21 27.11 3.00 15.20 3.25 0.00 4.39 8.56 6.52 5.44 2.69 0.00 64 Ix Intron 0 8.35 6.86 7.25 14.40 9.38 5.38 13.44 8.10 7.55 5.64 3.01 14.54 15.86 1.67 6.61 8.03 5.83 2.17 3.14 4.97 1.77 0.92 3.36 65 Ix_SR2 SilentIntronRegion 0 9.77 8.75 8.18 20.41 10.62 4.82 13.74 11.60 9.36 8.83 3.86 17.58 17.77 1.83 6.95 8.99 5.42 2.52 3.92 5.26 1.89 1.25 3.71 66 Ix_AR1 ActiveIntronRegion 0 8.43 8.36 7.15 16.44 11.51 5.91 15.95 7.55 11.34 4.40 2.91 13.52 24.63 2.13 7.03 8.04 2.24 1.97 4.43 5.53 1.68 1.86 2.45 67 E10_Aa NovelBoundary 0 13.71 15.52 4.79 21.48 24.79 13.97 33.96 0.00 7.64 7.82 2.42 5.85 13.64 2.47 6.30 11.02 13.65 4.31 0.00 2.88 5.87 0.00 3.67 68 ER10a ExonRegion 1 18.57 11.96 10.84 17.59 11.66 4.60 19.91 9.96 5.72 6.43 6.50 31.33 25.72 1.45 7.05 12.94 6.83 3.11 4.34 7.07 2.28 1.24 6.87