Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC074289.1 Gene 0 147.74 10.06 21.09 12.95 17.57 12.08 15.38 8.99 14.20 6.04 19.92 90.37 145.96 65.35 408.51 125.32 99.67 14.71 6.22 16.09 7.14 2.55 7.08 2 438115 Transcript 0 16.18 0.12 0.32 0.00 2.20 0.11 0.16 0.00 1.32 0.10 5.21 48.94 81.84 36.18 265.66 91.50 65.32 0.00 0.51 0.13 0.13 0.00 0.00 3 413030 Transcript 1 5.72 0.00 1.57 0.00 3.92 0.00 0.00 0.00 0.87 0.00 1.67 70.73 85.34 43.02 183.00 44.69 51.56 0.00 0.00 0.00 0.00 0.00 0.00 4 426365 Transcript 0 2.96 0.00 0.00 1.00 2.27 0.00 0.01 0.51 0.01 0.00 0.42 33.01 25.56 10.86 68.06 15.01 12.38 0.00 0.00 0.00 0.00 0.00 0.00 5 449678 Transcript 0 4.23 0.00 0.53 0.00 1.04 0.68 0.83 0.00 0.22 0.00 0.00 0.00 0.00 0.03 0.98 0.96 2.56 0.72 0.00 3.53 0.32 0.00 0.19 6 436950 Transcript 0 10.22 4.45 1.10 1.83 2.28 2.12 7.57 1.46 1.26 0.73 0.74 3.87 7.66 2.38 6.11 2.54 6.77 2.09 1.06 8.28 0.62 1.09 1.95 7 451350 Transcript 0 304.45 14.91 59.57 28.99 24.34 20.61 17.24 14.61 22.72 9.50 32.87 170.98 220.85 98.62 844.20 189.12 145.85 28.91 10.32 17.25 9.87 2.54 9.53 8 ER1a ExonRegion 0 73.69 0.96 2.59 0.00 13.90 0.87 1.25 0.00 6.07 0.81 20.44 10.30 18.63 61.94 427.21 202.38 144.60 0.00 3.01 1.00 1.04 0.00 0.00 9 E1a_E2a KnownJunction 0 30.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 19.06 59.41 10.07 119.17 34.26 70.78 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 1 11.22 0.00 0.00 0.00 3.71 0.00 0.00 0.00 0.76 0.00 9.11 97.96 198.90 46.85 328.75 111.16 115.64 0.00 1.11 0.00 0.00 0.00 0.00 11 E2a_E3a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 99.33 127.75 66.04 524.14 149.79 44.23 0.00 0.00 0.00 0.00 0.00 0.00 12 E2a_E3b NovelJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 2.25 0.00 3.36 0.00 2.00 63.92 127.75 51.45 327.59 85.19 42.45 0.00 0.00 0.00 0.00 0.00 0.00 13 E2a_E5a NovelJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.24 31.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.16 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 1 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.48 120.14 165.32 79.99 535.28 146.38 57.77 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3b ExonRegion 1 7.41 0.00 0.91 0.00 0.00 0.00 0.00 0.00 1.38 0.00 1.66 128.59 158.39 56.66 373.89 107.63 71.39 0.00 2.32 0.00 0.00 0.00 0.00 17 E3a_E4a KnownJunction 0 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 25.96 52.11 15.36 120.03 50.33 56.66 0.00 0.00 0.00 0.00 0.00 0.00 18 E3a_E5a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.79 7.95 8.60 2.88 83.44 26.66 28.33 0.00 0.00 0.00 0.00 0.00 0.00 19 E3a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.15 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER4a ExonRegion 0 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 1.19 18.78 32.62 9.20 70.70 37.68 32.91 0.00 0.00 0.00 0.00 0.00 0.00 21 E4a_E5a NovelJunction 0 3.85 0.00 0.00 0.00 0.00 0.00 2.34 0.00 1.59 0.00 2.79 7.80 0.00 0.00 6.55 22.64 19.54 0.00 0.00 0.00 0.00 0.00 0.00 22 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER5a ExonRegion 1 4.06 0.00 1.33 0.00 4.13 0.00 0.00 0.00 1.24 0.00 0.12 99.22 133.47 51.84 180.12 47.68 50.61 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E6a NovelJunction 1 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.46 20.45 18.89 78.37 11.54 4.68 0.00 0.00 0.00 0.00 0.00 0.00 25 E5a_E9a KnownJunction 1 13.11 0.00 1.69 0.00 7.64 0.00 0.00 0.00 1.39 0.00 2.11 105.03 113.95 74.34 285.43 59.73 75.74 0.00 0.00 0.00 0.00 0.00 0.00 26 ER6a ExonRegion 0 2.13 0.00 0.00 0.73 0.38 0.00 0.01 1.03 0.02 0.00 0.85 20.56 31.47 12.59 63.31 14.30 11.76 0.00 0.00 0.00 0.00 0.00 0.00 27 E6a_E9a KnownJunction 1 3.78 0.00 0.00 1.27 4.16 0.00 0.00 0.00 0.00 0.00 0.00 45.46 19.64 9.12 72.81 15.72 13.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER7a ExonRegion 0 8.47 0.00 1.07 0.00 2.07 1.36 1.67 0.00 0.44 0.00 0.00 0.00 0.00 0.05 1.97 1.92 5.11 1.43 0.00 7.07 0.64 0.00 0.38 29 E7_Ac KnownBoundary 0 64.23 0.00 5.94 2.53 8.49 15.22 4.28 1.56 2.92 0.00 0.00 0.00 0.00 4.59 13.35 3.25 13.37 6.51 0.00 8.95 3.15 0.00 4.18 30 ER7b ExonRegion 0 38.24 0.54 4.41 1.45 5.35 10.64 5.12 0.92 2.47 0.00 0.00 0.00 0.00 3.14 10.83 4.56 9.90 6.28 0.00 11.77 2.20 0.00 2.94 31 ER7c ExonRegion 0 108.22 5.76 8.40 5.22 2.38 15.01 6.37 2.53 5.74 0.28 0.00 0.00 2.17 11.22 12.95 3.25 12.53 9.41 0.00 4.73 2.24 0.00 4.19 32 E7a_E8a KnownJunction 0 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E7a_E9a KnownJunction 0 139.14 6.12 8.25 7.42 0.00 9.60 0.00 4.15 7.12 1.16 0.00 0.00 6.82 0.00 13.35 0.00 16.92 6.67 0.00 0.00 3.15 0.00 3.16 34 ER8a ExonRegion 0 10.92 0.55 1.58 0.00 0.00 1.86 1.40 0.78 2.37 0.00 0.00 3.08 9.78 0.78 3.00 0.00 8.36 1.63 0.00 4.54 0.00 0.00 0.00 35 E8_Da NovelBoundary 0 0.00 0.00 14.96 31.36 0.00 0.00 0.00 15.40 16.87 13.57 0.00 0.00 33.93 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E8a_E9a KnownJunction 0 10.30 3.35 0.00 0.00 0.00 0.00 2.21 2.22 0.00 0.00 0.00 0.00 0.00 2.47 4.45 0.00 3.55 2.28 0.00 8.63 0.00 0.00 0.00 37 ER9a ExonRegion 1 88.66 2.18 10.65 4.29 13.33 5.00 3.32 3.76 10.03 2.00 6.90 201.74 300.98 84.25 510.06 106.67 119.20 8.78 1.49 10.99 2.53 0.08 1.54 38 E9_Da KnownBoundary 1 97.35 0.00 24.19 9.79 19.02 0.00 6.40 12.12 19.79 1.50 4.79 168.50 377.73 107.78 591.51 118.69 137.91 9.95 0.00 21.54 0.00 0.00 0.00 39 ER9b ExonRegion 1 62.59 1.28 21.43 14.02 9.48 0.00 4.92 11.46 16.41 1.61 3.04 112.94 173.67 106.54 435.93 118.12 116.47 9.24 0.09 15.56 3.34 2.08 2.77 40 E9b_E10a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 5.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E9b_E11a KnownJunction 1 63.42 5.53 24.07 24.41 0.00 0.00 4.15 16.59 20.31 1.48 2.00 128.44 68.83 132.20 414.49 143.30 88.73 12.31 0.00 14.06 5.87 2.63 4.18 42 I9_AR1 ActiveIntronRegion 0 4.18 0.61 0.36 0.75 1.32 0.00 0.49 0.00 0.00 0.63 0.00 12.98 36.99 1.75 8.33 5.48 7.51 0.05 0.00 2.63 0.00 0.00 0.00 43 ER10a ExonRegion 0 22.84 18.33 3.93 9.15 11.39 8.72 34.23 4.28 3.93 3.66 3.69 16.27 28.51 6.49 11.36 12.68 21.95 6.53 5.29 28.20 3.12 5.43 9.73 44 E10_Da NovelBoundary 0 0.00 3.16 76.40 143.07 4.07 0.00 3.97 100.80 88.97 82.04 0.00 26.56 25.00 2.94 4.45 6.32 8.60 38.55 0.00 5.75 0.00 0.00 0.00 45 ER11a ExonRegion 1 70.07 6.67 22.86 13.68 9.22 11.21 3.88 13.92 14.97 2.75 8.98 97.52 133.53 84.96 412.39 157.83 98.30 11.94 2.65 12.06 3.69 2.03 0.24 46 E11_Da KnownBoundary 1 59.86 2.63 40.80 14.15 3.23 11.07 2.25 25.26 16.52 3.14 2.21 26.11 66.23 51.50 164.66 83.65 76.39 7.71 0.00 0.00 0.00 0.00 0.00 47 E11a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E11_Db KnownBoundary 1 192.40 3.35 3.67 0.00 8.66 5.79 2.25 0.00 0.00 0.00 5.37 0.00 24.84 3.00 56.74 230.45 56.94 2.28 9.51 3.26 0.00 0.00 0.00 49 E11_Dc KnownBoundary 1 56.45 12.63 21.73 3.10 19.02 22.15 2.08 11.42 2.95 3.68 20.22 44.56 67.69 97.95 306.20 93.82 92.47 6.05 0.00 2.62 5.56 0.00 0.00 50 ER11b ExonRegion 1 186.86 8.13 45.16 14.41 14.53 18.08 3.59 23.46 16.41 4.10 11.60 104.53 216.41 128.07 560.77 293.39 146.18 11.88 8.65 2.74 2.20 0.89 0.00 51 ER11c ExonRegion 0 189.91 9.98 43.33 14.87 22.87 29.17 4.09 24.83 17.85 5.73 21.96 115.71 223.42 161.82 598.98 302.62 168.65 17.64 6.37 4.45 5.01 0.00 0.00 52 ER11d ExonRegion 0 207.76 5.71 24.54 11.12 20.40 19.00 8.33 11.83 20.42 5.01 11.48 103.12 133.23 107.01 545.96 178.19 154.97 22.94 2.08 13.68 6.32 0.95 1.01 53 E11_Ab KnownBoundary 0 258.27 14.41 45.95 8.72 16.13 14.48 17.49 17.83 27.52 6.72 16.79 166.10 299.01 91.82 712.28 194.56 152.41 40.13 0.00 28.83 0.00 0.00 0.00 54 ER11e ExonRegion 1 303.64 10.08 44.05 19.20 13.50 4.82 10.47 5.92 21.21 9.84 16.82 153.11 306.73 100.11 815.25 159.82 110.78 21.26 7.11 8.40 1.29 1.46 3.28 55 E11_Dd KnownBoundary 1 216.93 17.63 58.48 26.27 15.28 12.21 9.32 11.01 14.32 7.90 14.27 175.56 352.25 114.07 850.12 114.33 114.91 9.58 7.72 5.75 3.15 2.27 0.00 56 ER11f ExonRegion 0 259.96 10.80 70.61 29.41 13.02 10.31 4.24 11.45 18.42 6.93 21.13 169.43 273.38 108.71 919.76 141.67 135.12 21.35 6.30 6.29 2.35 0.28 1.70 57 E11e_E12a KnownJunction 1 381.18 11.45 93.28 38.39 12.99 22.66 4.50 12.69 19.68 5.45 24.48 273.99 228.07 98.83 1259.78 236.18 152.13 35.90 9.22 3.26 3.09 0.00 4.27 58 E12_Aa NovelBoundary 0 118.10 49.66 34.92 31.83 41.77 6.30 96.76 62.80 55.29 28.47 41.69 11.40 54.38 17.78 36.71 64.26 50.02 43.19 14.31 112.17 21.07 9.31 38.16 59 ER12a ExonRegion 0 368.92 31.69 49.84 37.05 50.94 30.48 51.88 22.45 32.39 20.60 74.38 137.37 248.71 79.94 651.31 200.44 141.18 35.46 23.68 45.78 27.74 8.94 31.16