Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC016747.1 Gene 0 32.97 30.30 22.46 26.47 32.12 33.98 25.86 14.11 21.58 25.71 23.98 66.16 68.83 50.96 71.89 57.91 54.32 27.62 39.90 26.58 27.75 18.75 16.35 2 443946 Transcript 0 7.05 4.67 2.36 2.41 4.62 3.53 7.43 2.45 2.49 2.91 2.14 9.44 5.91 10.71 14.14 7.14 7.81 7.05 7.43 7.74 5.08 1.98 7.00 3 417691 Transcript 0 13.52 6.59 0.10 2.64 11.68 6.55 11.28 1.99 1.85 1.75 3.70 6.15 12.04 8.88 20.62 10.61 5.25 5.31 8.70 11.92 4.99 3.44 8.69 4 420918 Transcript 0 24.22 28.58 24.95 26.40 29.92 32.12 22.22 12.87 20.94 25.96 33.11 59.68 57.06 60.75 90.46 52.45 97.03 19.26 38.67 27.33 39.61 13.59 14.70 5 422740 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 391661 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 7.06 3.50 2.79 0.38 1.19 3.87 3.75 0.67 1.92 0.64 2.26 4.33 0.00 15.25 11.28 6.11 5.68 3.18 5.13 0.95 6.24 0.12 4.57 8 ER1b ExonRegion 0 39.16 17.29 3.68 3.41 5.35 27.51 14.56 3.46 6.18 3.44 9.66 8.66 0.00 68.21 68.18 32.69 26.41 14.78 22.30 6.38 22.04 4.17 17.62 9 ER1c ExonRegion 0 130.79 55.49 12.57 19.98 38.73 72.02 36.94 8.17 12.73 19.91 27.81 5.28 0.32 182.23 213.71 105.84 109.27 40.71 57.28 18.93 59.39 23.98 38.62 10 E1_Ad KnownBoundary 0 251.82 95.11 24.87 40.69 107.30 114.03 54.54 13.43 25.98 42.58 42.91 0.00 0.00 196.01 368.63 171.92 210.57 71.71 76.24 47.43 72.28 29.64 48.40 11 ER1d ExonRegion 1 79.23 41.36 20.25 20.48 30.25 39.26 19.60 11.26 17.65 26.46 26.83 15.19 12.16 67.50 110.47 51.68 108.57 50.48 44.22 28.74 52.85 13.60 16.18 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.24 4.45 0.00 0.00 2.36 0.00 2.68 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.56 0.00 0.00 0.00 6.95 5.19 0.00 0.00 0.00 4.61 0.00 2.35 0.00 0.00 14 E1a_E3b KnownJunction 1 20.52 24.60 27.97 27.10 32.26 29.98 11.84 10.97 19.10 26.73 52.54 31.36 6.82 107.01 161.69 52.64 201.96 9.78 47.25 27.16 78.21 4.90 16.39 15 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 24.79 2.90 4.06 0.00 0.00 0.00 0.00 0.00 0.00 5.47 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 3.93 16 ER2a ExonRegion 0 14.10 10.52 4.29 4.96 12.68 6.71 18.54 6.68 5.54 8.09 4.16 24.00 17.73 11.65 26.70 15.32 17.74 15.59 17.15 19.59 9.00 5.83 16.44 17 E2_Da NovelBoundary 0 303.24 412.49 761.74 907.44 252.29 203.58 480.84 764.26 664.89 750.23 95.45 51.92 54.70 80.99 108.04 335.30 225.25 685.02 641.81 455.73 184.84 203.05 281.70 18 ER3a ExonRegion 0 5.16 3.42 0.00 0.43 5.38 10.14 6.13 2.28 1.65 0.36 3.10 7.42 11.10 5.93 14.80 15.98 10.64 2.38 8.48 12.03 6.68 3.17 6.38 19 E3_Da KnownBoundary 0 315.39 308.23 271.13 232.07 324.96 202.27 302.16 256.10 212.85 186.07 111.29 75.17 82.14 101.89 102.48 221.05 200.56 242.79 291.68 196.10 104.65 81.56 213.92 20 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3b ExonRegion 0 13.52 6.59 0.10 2.64 11.68 6.55 11.28 1.99 1.85 1.75 3.70 6.15 12.04 8.88 20.62 10.61 5.25 5.31 8.70 11.92 4.99 3.44 8.69 22 E3_Ab KnownBoundary 0 10.74 9.67 0.00 3.90 22.33 0.00 8.08 0.00 3.50 1.18 0.00 0.00 0.00 16.48 10.51 7.35 0.00 2.36 0.00 2.49 0.00 0.00 0.00 23 ER3c ExonRegion 0 52.27 50.75 39.53 52.81 55.58 54.78 31.23 23.12 41.55 46.78 43.98 93.11 79.57 147.24 215.06 139.40 122.55 65.17 90.31 42.06 74.24 40.34 36.90 24 E3_Db KnownBoundary 0 21.63 5.85 21.64 21.21 24.62 24.70 8.52 20.41 27.03 13.27 19.90 27.16 19.64 42.85 52.17 19.40 30.48 4.02 45.08 18.22 9.02 26.70 7.68 25 E3_Dc KnownBoundary 0 10.30 14.60 7.72 16.08 0.00 15.96 11.84 7.56 7.06 20.07 2.68 11.85 70.77 21.60 21.01 6.84 12.16 4.60 11.95 14.83 3.21 11.14 0.00 26 ER3d ExonRegion 0 17.91 12.20 12.07 15.31 10.09 21.86 9.98 9.84 20.62 22.23 14.27 25.31 57.72 44.98 41.06 25.15 33.26 9.10 35.04 15.71 5.09 22.92 2.26 27 ER3e ExonRegion 0 30.06 31.39 26.72 30.39 35.91 38.98 30.60 17.08 23.50 29.20 28.58 90.19 91.75 37.55 45.75 53.02 51.06 20.75 37.85 26.86 21.54 18.81 11.11 28 E3_Ac KnownBoundary 0 24.15 40.19 34.33 28.93 39.05 17.38 21.90 23.41 41.35 54.72 35.01 119.59 211.35 45.38 45.61 66.31 58.72 17.58 33.79 28.89 37.44 43.17 23.65 29 ER3f ExonRegion 1 61.25 52.49 49.89 52.61 79.00 55.36 31.49 28.56 49.74 53.56 31.65 121.44 174.82 57.70 53.20 86.67 69.15 54.09 68.13 31.65 47.63 33.65 21.55 30 E3_Dd KnownBoundary 0 127.87 119.19 68.09 52.64 106.45 78.93 63.46 29.41 57.55 55.36 49.43 124.84 231.80 102.77 91.35 156.97 103.32 74.99 137.79 41.87 66.35 45.37 43.62 31 ER3g ExonRegion 0 22.06 29.76 20.17 21.71 21.60 27.41 24.22 10.57 20.24 21.96 18.20 57.49 72.61 37.68 63.95 51.69 38.08 27.26 30.92 27.96 19.07 17.06 16.60