Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SPRED2 Gene 0 11.46 20.97 17.52 11.71 15.51 38.26 27.26 26.40 25.73 24.64 55.33 26.66 31.19 38.18 16.00 31.81 49.58 143.78 44.46 76.96 103.34 98.59 83.14 2 440972 Transcript 0 0.00 0.48 0.43 1.28 0.63 8.92 5.74 0.61 1.13 1.20 6.36 0.00 0.00 3.61 0.47 2.78 3.82 14.48 8.85 7.70 6.15 4.24 9.50 3 356388 Transcript 0 4.06 2.65 2.42 0.51 3.71 8.04 8.45 4.39 3.60 8.23 13.31 6.95 3.82 17.68 2.79 7.40 10.36 27.97 6.62 17.19 23.75 14.45 16.23 4 452315 Transcript 0 0.39 0.00 0.00 0.38 0.49 0.00 2.94 0.48 0.68 0.00 0.00 3.29 0.71 0.25 0.91 0.00 3.05 4.41 1.18 5.11 4.46 0.00 2.12 5 443619 Transcript 0 0.00 0.00 2.96 0.03 0.00 0.00 1.81 0.71 0.72 0.02 0.00 7.53 0.00 0.00 2.02 0.00 1.15 0.52 0.00 6.01 0.62 0.00 2.81 6 474228 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 6.58 10.21 0.00 0.00 0.00 0.00 8.12 0.00 4.10 0.00 3.26 0.00 5.82 0.00 7 426832 Transcript 0 1.11 1.48 1.89 0.00 0.70 0.48 4.51 0.00 0.97 0.45 1.02 1.14 0.00 3.82 0.00 0.00 1.67 6.05 1.67 5.53 1.74 2.19 2.24 8 427238 Transcript 0 0.68 2.34 9.49 5.58 2.89 2.93 8.48 7.55 8.00 2.31 11.32 13.44 9.11 8.16 7.84 5.50 19.91 13.12 8.30 8.46 7.73 8.60 5.01 9 421087 Transcript 0 0.00 3.35 6.33 0.00 0.00 0.00 0.00 0.00 2.72 4.03 2.68 0.00 0.00 2.77 0.00 3.76 4.68 4.06 0.00 3.20 0.00 8.27 0.00 10 ER1a ExonRegion 0 0.00 0.95 0.87 0.50 1.25 14.94 7.56 1.22 0.46 2.41 10.66 0.00 0.00 7.21 0.93 5.56 7.63 19.38 17.71 12.71 12.29 8.49 18.99 11 E1a_E2b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 2.90 3.93 0.00 1.79 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 9.58 0.00 2.68 0.00 0.00 0.00 12 I1 Intron 0 0.36 1.75 0.63 1.74 2.76 12.91 6.37 5.75 4.74 5.57 12.61 3.10 3.98 19.24 8.15 13.78 13.60 33.61 24.07 20.09 37.46 26.48 38.84 13 I1_AR1 ActiveIntronRegion 0 0.37 1.75 0.63 1.75 2.78 12.98 6.40 5.78 4.77 5.61 12.68 3.13 4.01 19.36 8.20 13.84 13.67 33.81 24.19 20.21 37.69 26.63 39.09 14 E2_Aa NovelBoundary 0 3.63 5.85 12.77 5.16 3.82 49.57 26.98 13.72 11.05 16.95 48.59 11.70 20.94 26.96 28.31 27.69 40.30 103.14 34.54 43.46 60.91 45.19 38.93 15 ER2a ExonRegion 1 3.90 3.27 3.62 1.03 3.84 13.03 8.52 5.33 6.37 13.79 24.70 5.25 7.63 35.35 5.59 14.80 17.42 55.94 13.25 32.96 47.50 23.34 32.46 16 E2_Ab KnownBoundary 0 5.93 18.02 9.14 3.03 12.39 22.77 3.53 12.24 13.31 21.68 21.48 16.96 21.10 33.32 17.80 35.20 12.06 104.88 30.87 60.15 61.72 36.56 53.18 17 ER2b ExonRegion 0 15.80 21.29 19.89 10.88 14.83 32.75 16.47 30.43 30.60 33.86 75.75 30.20 25.83 54.95 31.49 50.55 59.74 221.99 72.01 113.50 122.22 99.31 79.92 18 E2a_E5a KnownJunction 0 23.93 53.02 41.75 29.47 25.64 56.05 37.45 33.72 54.69 48.11 104.87 31.21 26.62 102.07 18.54 35.63 85.09 292.62 93.74 199.61 186.32 155.66 131.46 19 I2_SR3 SilentIntronRegion 0 1.44 1.52 5.85 2.18 1.31 0.00 5.76 0.48 3.18 2.33 1.29 5.93 6.13 1.05 2.50 2.03 12.28 8.73 4.66 14.29 7.13 0.76 7.37 20 I2_AR4 ActiveIntronRegion 0 3.33 4.23 4.35 2.87 1.98 1.14 14.95 8.24 6.36 1.63 1.06 11.30 26.05 0.12 3.06 3.76 9.44 4.24 2.91 20.58 0.60 0.96 8.99 21 I2_SR4 SilentIntronRegion 0 4.19 2.09 2.37 3.18 4.62 0.54 14.60 4.72 1.73 1.34 0.88 12.69 18.84 0.46 1.48 4.27 8.02 6.83 4.67 15.92 2.75 0.95 9.91 22 I2_AR5 ActiveIntronRegion 0 6.90 3.90 5.66 2.78 11.25 0.66 17.80 4.33 3.51 0.41 1.86 6.76 3.18 1.41 4.21 3.73 9.96 6.23 4.20 12.11 2.48 1.00 8.69 23 I2_SR5 SilentIntronRegion 0 5.05 5.44 0.95 4.22 2.20 1.51 8.82 0.89 3.67 0.00 0.84 0.00 0.00 1.78 3.37 13.33 0.05 2.65 6.17 23.47 2.56 0.00 9.71 24 I2_AR6 ActiveIntronRegion 0 4.37 5.52 7.25 8.53 1.30 2.72 11.26 5.38 5.09 1.90 1.79 5.07 8.13 1.04 2.35 7.56 8.11 4.40 4.67 20.51 2.08 0.00 8.31 25 I2_AR7 ActiveIntronRegion 0 10.91 5.69 10.32 4.33 7.36 0.96 15.63 7.23 4.76 6.28 0.92 12.14 12.57 1.63 6.77 13.50 11.32 11.38 7.86 24.42 4.06 1.27 14.74 26 I2_AR9 ActiveIntronRegion 0 6.83 7.52 12.27 6.16 21.26 1.38 20.28 8.77 8.09 6.02 1.82 5.77 8.09 0.20 2.60 12.60 7.34 19.10 7.09 17.92 4.80 0.59 14.09 27 I2_AR10 ActiveIntronRegion 0 8.27 18.30 13.87 11.89 21.04 4.00 21.18 0.79 7.69 5.00 2.02 7.28 4.05 0.00 2.90 8.65 0.00 13.35 0.00 29.01 1.10 1.52 11.35 28 I2_AR11 ActiveIntronRegion 0 5.91 7.51 8.92 3.51 4.22 1.79 10.90 10.63 8.32 5.40 1.73 7.73 8.67 1.40 3.79 10.13 12.40 15.93 10.89 27.31 6.78 1.72 16.74 29 I2_SR9 SilentIntronRegion 0 2.72 7.00 8.53 3.30 7.18 4.04 17.59 8.32 7.37 4.27 1.25 15.46 11.17 2.11 2.63 9.53 11.22 10.43 12.24 24.29 5.82 1.83 12.91 30 I2_AR12 ActiveIntronRegion 0 3.80 5.42 4.17 1.91 2.56 3.50 17.13 5.01 4.14 1.96 0.03 15.09 10.43 1.23 1.50 5.27 4.49 3.17 3.04 14.78 1.09 0.95 6.18 31 I2_SR10 SilentIntronRegion 0 4.52 6.51 2.93 1.41 3.17 1.63 14.18 5.05 5.28 1.83 0.38 11.06 10.03 1.57 2.44 7.89 6.18 3.47 5.77 18.75 4.13 0.78 7.37 32 I2_AR13 ActiveIntronRegion 0 4.59 3.81 5.69 2.86 4.39 0.34 11.67 5.75 4.89 3.90 0.83 12.27 10.61 1.12 3.23 7.33 8.33 10.88 4.02 25.59 5.09 0.10 13.04 33 I2_SR11 SilentIntronRegion 0 8.43 6.46 7.10 4.67 6.72 3.23 12.14 9.58 7.22 4.05 1.11 7.81 8.27 1.57 4.61 8.04 8.69 13.83 6.60 19.12 4.50 1.14 14.28 34 I2_AR14 ActiveIntronRegion 0 4.23 14.53 3.85 7.40 2.68 2.36 23.45 6.91 2.65 4.75 1.93 21.65 7.37 1.62 2.90 2.97 13.20 11.09 1.82 26.14 0.00 8.33 8.81 35 I2_SR12 SilentIntronRegion 0 4.23 12.88 4.90 8.18 2.68 5.50 24.71 6.91 4.53 3.95 1.93 21.65 7.30 1.62 2.90 2.97 13.20 10.06 3.19 23.40 0.00 8.33 6.85 36 I2_AR15 ActiveIntronRegion 0 3.47 5.21 4.10 4.86 4.86 4.57 12.44 4.00 4.00 6.12 1.28 6.55 10.34 0.72 2.39 3.50 7.62 7.88 4.91 25.61 1.11 2.46 8.66 37 I2_AR16 ActiveIntronRegion 0 9.00 12.32 7.04 9.27 11.79 4.33 27.62 17.84 12.02 7.67 1.22 11.89 16.11 2.07 5.95 8.42 8.83 9.20 7.52 18.92 4.33 2.95 17.57 38 I2_SR16 SilentIntronRegion 0 5.41 10.58 12.08 7.63 10.10 3.91 16.04 7.31 13.57 6.33 2.25 7.99 7.97 0.87 1.71 8.35 8.78 18.52 9.13 20.16 2.78 3.93 17.11 39 I2_AR20 ActiveIntronRegion 0 10.20 14.09 13.39 8.35 11.55 4.58 16.38 9.52 10.69 4.43 1.77 11.54 9.31 1.54 6.31 6.34 8.52 14.08 6.72 15.55 5.99 1.89 9.59 40 I2_AR21 ActiveIntronRegion 1 6.99 17.88 7.67 7.69 8.25 2.23 13.36 8.38 8.48 1.33 0.68 14.32 18.31 1.83 2.84 8.62 6.77 12.35 5.44 19.02 6.14 2.16 9.35 41 I2_AR24 ActiveIntronRegion 1 2.69 4.15 10.56 9.70 1.65 0.00 6.52 7.51 5.37 3.22 0.00 15.82 9.02 1.06 7.70 16.92 15.62 12.22 21.32 13.91 6.44 0.00 8.70 42 E3_Aa NovelBoundary 1 17.63 0.00 1.77 0.00 7.30 0.00 8.48 2.46 3.47 1.07 0.00 0.00 20.13 0.00 4.45 14.27 3.74 25.95 8.09 19.88 7.66 0.00 11.78 43 ER3a ExonRegion 0 0.78 0.00 0.00 0.75 0.99 0.00 5.87 0.95 1.36 0.00 0.00 6.59 1.43 0.49 1.83 0.00 6.10 8.82 2.35 10.22 8.91 0.00 4.23 44 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E4_Aa NovelBoundary 1 0.00 0.00 0.00 0.00 0.00 0.00 3.71 2.55 0.00 0.00 0.00 31.06 8.28 0.00 4.45 8.37 0.00 8.62 0.00 9.46 0.00 2.33 20.15 46 ER4a ExonRegion 0 0.00 0.00 2.96 0.03 0.00 0.00 1.81 0.71 0.72 0.02 0.00 7.53 0.00 0.00 2.02 0.00 1.15 0.52 0.00 6.01 0.62 0.00 2.81 47 E4_Ab KnownBoundary 0 0.00 0.00 5.50 0.00 0.00 0.00 6.40 2.01 4.25 0.00 0.00 12.00 0.00 0.00 6.30 0.00 4.30 1.78 0.00 14.38 2.66 0.00 8.37 48 ER4b ExonRegion 0 4.00 2.56 2.65 1.27 1.68 0.00 8.40 1.82 5.74 1.07 0.61 10.69 3.91 0.78 0.98 0.94 2.83 4.48 0.00 9.90 32.05 7.49 20.16 49 E4_Da NovelBoundary 1 6.08 3.35 0.00 0.00 0.00 0.00 8.21 2.55 0.00 2.95 0.00 19.36 0.00 0.00 12.61 0.00 8.88 8.75 0.00 5.69 7.35 0.00 11.18 50 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 2.55 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 48.68 3.12 4.01 51 ER5a ExonRegion 0 19.98 36.54 41.40 27.31 16.63 50.92 32.46 53.39 56.68 55.60 108.58 55.97 35.41 75.67 31.53 69.03 92.22 305.50 87.01 164.20 256.57 172.06 145.33 52 E5_Ab KnownBoundary 0 20.00 50.25 27.97 22.14 7.47 39.64 20.71 49.17 51.10 37.61 93.29 24.76 21.10 46.38 19.41 74.60 77.98 219.08 80.57 121.95 100.51 231.59 131.89 53 E5_Ac KnownBoundary 0 14.82 34.34 39.35 15.85 7.98 66.44 35.86 42.10 41.06 47.87 107.55 68.42 47.40 73.70 32.51 57.34 89.57 299.13 97.98 218.21 237.35 196.56 127.53 54 ER5b ExonRegion 0 23.61 55.85 48.73 30.19 8.85 70.81 38.09 70.07 70.40 64.67 139.91 72.27 67.83 99.07 41.29 87.56 120.61 397.41 118.35 250.57 255.12 302.91 185.46 55 ER5c ExonRegion 0 15.35 43.07 55.82 31.49 32.75 77.68 53.67 63.23 63.41 70.39 158.99 76.06 65.31 95.90 46.07 74.79 134.75 382.15 134.31 274.78 301.91 246.17 191.36 56 E5_Da NovelBoundary 0 7.19 0.00 16.08 5.09 0.00 0.00 6.40 8.50 10.62 1.10 4.84 0.00 0.00 7.18 23.86 3.67 9.54 53.52 18.82 14.19 3.09 5.51 15.45 57 E5a_E6a KnownJunction 0 0.00 0.00 6.33 5.23 0.00 0.00 6.76 4.07 7.73 0.00 13.00 12.45 6.82 12.30 11.50 4.36 25.06 11.52 9.60 3.20 8.90 8.70 4.18 58 E5a_E7a KnownJunction 0 12.89 49.20 47.75 33.20 40.49 124.19 94.82 59.15 52.63 71.40 142.93 92.58 87.98 116.90 47.72 92.97 120.52 336.93 131.02 238.28 266.45 270.77 153.06 59 E5a_E10a NovelJunction 0 0.00 0.00 5.09 0.00 0.00 7.72 4.06 4.23 5.01 5.69 7.48 0.00 0.00 4.30 9.64 11.71 26.55 48.71 27.39 23.97 32.74 84.81 18.10 60 E5a_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 3.95 0.00 0.00 9.00 0.00 61 E6_Aa NovelBoundary 0 16.30 3.35 13.63 7.66 4.33 5.79 23.80 4.64 6.86 3.22 4.63 0.00 0.00 2.12 4.45 15.47 13.65 49.00 12.71 27.04 11.74 8.76 16.39 62 ER6a ExonRegion 0 1.35 4.68 12.64 5.92 5.78 5.86 10.20 11.03 8.27 4.61 9.64 14.42 11.40 4.02 4.18 6.65 14.76 14.71 6.99 13.72 6.56 8.51 5.83 63 E6_Da NovelBoundary 0 0.00 6.71 0.00 0.00 0.00 2.44 12.98 0.00 1.74 0.00 2.68 21.61 6.82 0.00 9.64 4.19 16.74 2.11 0.00 18.02 2.72 14.45 14.85 64 I6_AR1 ActiveIntronRegion 0 7.42 7.23 16.08 11.56 6.07 5.96 19.92 13.86 11.16 3.36 2.52 15.04 13.35 1.74 2.50 3.59 5.66 11.84 3.91 18.06 4.77 8.67 8.21 65 ER7a ExonRegion 0 17.78 48.53 55.01 36.30 46.39 95.23 71.72 82.82 82.39 75.37 182.85 87.22 107.03 115.18 48.60 111.12 152.16 480.10 148.00 255.17 321.41 315.88 229.99 66 E7_Da NovelBoundary 0 3.78 21.31 47.04 50.51 17.83 59.45 65.67 83.83 84.23 84.88 177.47 78.63 90.09 105.77 42.77 113.65 127.91 531.39 149.09 269.47 275.77 311.25 303.04 67 E7b_E8a KnownJunction 0 0.00 0.00 0.00 1.43 0.00 0.00 4.50 0.00 1.22 0.00 0.00 0.00 5.84 0.00 0.00 0.00 0.00 6.59 0.00 3.26 0.00 3.12 0.00 68 E7b_E10a KnownJunction 0 17.34 17.63 41.31 47.35 60.95 122.43 68.19 111.60 103.67 97.43 236.95 113.14 77.92 142.03 53.77 145.60 223.00 567.33 230.88 359.53 358.25 479.76 347.43 69 ER7b ExonRegion 0 10.67 17.96 42.07 47.13 36.12 89.17 62.28 94.63 98.96 90.27 233.48 103.37 84.23 119.24 58.75 130.15 190.08 549.71 197.36 305.50 330.83 395.43 335.76 70 E8_Aa NovelBoundary 0 0.00 0.00 1.69 4.46 0.00 22.03 27.51 7.19 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.51 0.00 14.32 14.70 0.00 8.71 71 ER8a ExonRegion 0 1.43 2.22 0.03 3.93 4.52 1.00 3.10 0.88 0.11 1.67 3.87 0.00 3.39 1.00 0.00 3.86 2.32 6.83 1.18 4.34 8.93 4.79 10.05 72 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 73 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 6.58 10.21 0.00 0.00 0.00 0.00 8.12 0.00 4.10 0.00 3.26 0.00 5.82 0.00 74 ER9a ExonRegion 0 2.23 2.96 3.79 0.00 1.41 0.96 9.02 0.00 1.94 0.90 2.03 2.28 0.00 5.17 0.00 0.00 3.33 9.87 3.35 11.06 3.48 4.38 4.48 75 E9_Da NovelBoundary 0 14.08 14.21 1.54 1.93 3.82 8.46 12.76 7.43 1.42 5.56 3.95 0.00 6.33 0.00 0.00 0.00 4.58 18.61 14.49 18.54 6.24 6.00 7.77 76 E10_Aa NovelBoundary 0 0.00 0.00 1.54 9.26 8.66 2.50 18.99 4.72 1.79 1.32 2.26 0.00 0.00 0.00 4.45 0.00 0.00 6.47 0.00 0.00 9.14 11.57 8.37 77 ER10a ExonRegion 0 13.84 42.20 49.75 34.79 43.96 99.73 64.43 93.04 109.98 105.29 244.85 110.77 98.56 126.28 44.50 133.20 201.56 386.24 149.27 283.80 364.26 354.71 291.27 78 E10a_E11a KnownJunction 0 16.52 54.27 56.53 36.86 64.43 96.25 51.41 100.80 99.16 99.44 161.62 120.19 142.04 99.42 26.95 97.84 136.51 331.01 123.58 216.68 331.87 348.17 239.10 79 E10a_E12a KnownJunction 0 0.00 3.35 6.33 0.00 0.00 0.00 0.00 0.00 2.72 4.03 2.68 0.00 0.00 2.77 0.00 3.76 4.68 4.06 0.00 3.20 0.00 8.27 0.00 80 ER11a ExonRegion 0 24.59 49.32 44.97 34.07 44.36 98.34 60.81 85.42 80.12 80.44 163.09 102.64 115.81 117.63 45.74 103.55 179.11 298.42 156.30 240.31 294.25 320.33 266.20 81 E11_Da NovelBoundary 0 0.00 0.00 4.32 4.99 0.00 0.00 1.94 4.39 1.79 2.66 4.42 0.00 6.82 4.24 0.00 16.15 8.32 24.58 0.00 8.56 11.37 2.82 0.00 82 E11a_E12a KnownJunction 0 14.52 8.16 35.13 31.60 18.42 47.98 27.87 55.70 59.61 69.36 81.55 79.38 27.92 87.00 18.67 63.40 106.03 232.72 121.89 165.87 206.34 209.30 124.54 83 ER12a ExonRegion 0 14.29 20.60 31.86 16.02 18.34 57.63 36.34 46.89 42.89 46.52 110.86 41.06 33.65 75.80 30.14 62.59 89.46 329.20 79.05 148.56 206.40 163.64 160.65 84 E12_Da KnownBoundary 0 12.97 38.94 41.66 31.53 60.36 54.12 56.66 70.20 64.96 73.57 149.51 31.51 75.16 106.13 48.33 136.63 106.12 723.44 178.64 181.65 265.21 407.63 333.77 85 ER12b ExonRegion 0 10.96 32.59 28.70 29.41 25.05 77.20 42.37 70.81 70.77 67.59 189.60 64.53 65.04 112.30 44.30 105.90 148.97 537.90 143.07 222.87 336.72 321.49 246.01 86 E12_Db KnownBoundary 0 31.64 27.89 40.30 44.25 62.56 109.71 44.65 91.18 104.31 83.49 251.64 55.37 80.19 143.92 63.42 198.67 239.74 732.15 299.77 326.49 462.84 633.89 457.89 87 ER12c ExonRegion 0 13.58 23.47 12.93 9.02 15.17 37.34 27.37 18.29 17.53 15.83 32.17 16.70 27.82 25.30 10.85 17.84 31.14 86.62 27.14 45.71 64.76 70.84 58.71 88 ER12d ExonRegion 0 4.23 2.03 1.23 0.00 3.57 3.06 8.39 3.46 0.82 2.68 1.93 8.66 0.00 0.00 0.00 0.00 3.30 0.00 0.00 1.42 0.00 5.56 0.00 89 IG2_AR3 ActiveIntergenicRegion 0 0.73 11.75 2.54 2.14 3.88 2.22 2.62 7.76 4.80 5.05 1.33 0.00 1.66 2.79 2.41 3.83 1.81 12.71 4.52 22.56 2.29 1.48 3.59 90 IG2_SR2 SilentIntergenicRegion 0 16.06 1.24 2.90 2.83 6.08 1.60 7.57 4.26 0.59 4.83 1.43 3.75 0.80 0.10 3.10 5.50 4.78 4.19 5.10 2.34 0.91 0.13 6.46 91 IG2_AR1 ActiveIntergenicRegion 0 12.40 4.93 3.24 2.32 9.46 2.32 13.16 5.56 2.58 6.37 1.11 4.62 5.71 0.83 4.42 4.05 1.75 2.58 2.25 4.72 0.00 1.54 1.30