Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NFU1 Gene 0 45.42 110.85 86.30 43.67 40.65 28.20 33.32 40.53 33.50 31.64 39.27 49.26 56.02 53.54 79.33 28.51 51.56 15.48 31.29 39.69 25.74 44.12 23.63 2 410022 Transcript 0 3.36 4.14 4.91 5.99 6.81 5.93 2.16 4.34 3.21 1.19 0.00 0.80 3.30 0.95 1.50 2.11 1.95 0.62 1.09 4.07 0.46 0.19 1.56 3 394305 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 410060 Transcript 0 4.32 2.21 4.39 2.99 5.86 1.75 3.28 2.50 2.59 1.75 0.60 1.30 3.49 0.84 2.46 2.68 1.34 1.48 0.99 3.68 0.72 0.81 1.50 5 303698 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 404290 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 471185 Transcript 0 0.00 24.34 7.16 1.90 0.00 0.00 0.00 5.01 1.79 1.67 0.00 0.00 6.82 0.00 0.00 4.27 7.95 0.00 0.00 0.00 0.00 13.10 3.59 8 419370 Transcript 0 1.92 4.95 2.70 2.54 3.79 5.18 0.58 1.68 0.00 0.62 0.57 3.86 0.68 1.57 4.84 1.74 1.61 0.41 3.45 4.65 0.97 1.74 3.75 9 484177 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 450796 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 438184 Transcript 0 2.55 0.94 2.20 2.30 2.02 0.28 3.19 2.73 1.68 2.19 0.15 1.65 3.00 0.39 0.89 0.89 0.50 0.42 2.15 0.97 0.00 0.63 0.66 12 462320 Transcript 0 0.08 0.05 0.05 0.00 0.07 0.00 0.12 0.00 0.05 0.04 0.00 0.00 0.00 0.10 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 13 474230 Transcript 0 3.34 1.17 3.03 1.65 1.58 1.73 3.62 0.91 1.70 3.43 1.67 0.93 0.46 0.68 1.13 0.70 0.78 0.86 2.76 1.98 0.78 0.23 1.05 14 IG38 Intergenic 0 64.77 26.73 19.56 23.56 41.27 41.77 23.73 22.46 23.77 16.36 15.82 24.99 33.60 29.13 40.83 25.83 23.06 18.26 9.58 11.76 16.49 22.79 16.97 15 IG38_AR1 ActiveIntergenicRegion 0 253.94 105.48 74.63 91.43 157.24 164.89 85.20 84.37 85.26 64.57 62.48 96.75 127.73 113.51 165.57 100.57 90.55 69.90 36.72 42.64 61.40 89.93 65.31 16 ER1a ExonRegion 0 0.53 0.00 0.00 0.00 9.03 8.94 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 1.81 2.97 2.48 0.46 0.00 0.00 0.00 0.00 0.00 17 ER1b ExonRegion 0 2.51 0.00 0.73 1.55 5.83 18.77 3.69 1.92 1.65 0.00 0.23 0.00 0.00 5.29 7.12 4.55 2.81 3.26 1.27 0.85 0.00 0.42 0.00 18 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 4.45 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 19 E1_Ad KnownBoundary 0 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 1.79 0.00 7.32 0.00 0.00 7.53 0.00 0.00 4.02 0.00 0.00 3.07 0.00 0.00 0.00 20 ER1c ExonRegion 0 0.00 0.00 1.57 0.45 0.00 1.94 0.00 1.73 1.99 0.00 5.15 0.00 0.00 5.59 0.81 0.00 4.58 0.00 0.00 0.00 0.00 2.08 0.00 21 ER1d ExonRegion 1 14.02 34.57 11.24 5.69 22.21 38.01 29.62 4.02 5.22 3.76 24.55 0.11 0.00 39.75 44.53 25.49 17.41 2.59 95.56 11.28 24.24 34.17 26.21 22 E1_Ae KnownBoundary 0 0.00 0.00 7.27 0.00 0.00 10.96 2.08 2.14 3.04 0.00 4.47 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 23 E1_Af KnownBoundary 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1_Ag KnownBoundary 0 7.48 23.48 3.40 7.99 21.65 23.17 18.02 4.93 0.00 0.00 13.42 0.00 0.00 6.00 0.00 17.09 4.77 11.23 91.11 3.26 12.48 28.11 26.12 25 E1_Ah KnownBoundary 0 60.68 162.67 27.97 17.28 53.82 100.06 115.35 9.08 13.34 15.98 16.69 6.30 0.00 60.22 40.18 65.97 39.27 11.32 126.87 21.41 75.31 73.54 68.12 26 ER1e ExonRegion 1 48.68 122.01 25.73 9.54 72.25 108.19 104.59 6.91 7.41 11.47 48.32 4.33 0.00 120.18 130.56 77.28 46.21 5.54 248.46 29.79 81.54 106.26 79.29 27 ER1f ExonRegion 1 52.21 149.13 26.55 9.99 72.25 121.23 114.89 6.91 7.69 12.49 51.33 4.33 0.00 141.66 178.91 80.25 56.85 5.54 259.08 34.75 88.39 111.35 86.14 28 E1_Ai KnownBoundary 1 236.78 506.69 250.17 79.91 96.69 168.48 201.21 134.64 151.68 158.32 94.44 0.00 6.33 95.06 329.07 110.40 435.53 24.54 203.02 149.12 161.18 95.95 140.00 29 ER1g ExonRegion 1 55.03 164.47 37.83 17.72 72.25 130.43 123.13 6.91 11.27 18.06 59.92 4.33 0.00 181.70 490.67 86.56 89.54 5.54 261.20 71.81 105.50 122.67 93.97 30 ER1h ExonRegion 1 47.91 149.93 42.39 20.94 61.30 106.61 107.72 5.34 13.31 23.20 56.23 4.33 1.92 139.23 488.86 75.65 88.52 3.61 202.27 66.73 96.26 110.99 79.96 31 ER1i ExonRegion 1 6.85 32.12 46.89 21.37 4.88 19.63 17.76 3.41 17.47 23.11 17.45 3.18 17.52 24.98 96.34 12.59 31.07 1.47 11.24 31.04 22.62 24.14 13.82 32 E1_Da KnownBoundary 0 0.00 2.70 5.20 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.11 0.00 3.13 0.00 0.00 0.00 33 E1a_E2a KnownJunction 0 0.00 2.63 55.00 28.13 0.00 0.00 0.00 8.26 22.68 19.56 5.16 0.00 33.76 2.88 0.00 4.19 4.49 4.19 0.00 3.07 5.50 0.00 4.35 34 ER1j ExonRegion 0 1.20 0.93 4.98 0.74 0.15 0.00 0.74 0.58 1.30 1.59 0.00 2.02 0.00 3.14 2.80 0.00 1.21 0.49 1.81 2.25 1.00 1.78 1.34 35 E1b_E2a KnownJunction 0 0.00 0.00 9.49 2.06 0.00 0.00 0.00 3.78 1.45 2.77 0.00 0.00 0.00 4.94 4.82 0.00 4.58 2.11 0.00 5.82 5.93 3.12 7.51 36 ER2a ExonRegion 1 102.31 156.59 188.67 74.08 27.53 53.74 34.46 97.03 101.45 89.70 199.87 47.42 70.35 108.93 110.16 68.36 316.76 44.95 173.69 103.52 182.42 77.43 90.08 37 E2a_E3a KnownJunction 0 2.82 0.00 3.08 3.80 0.00 2.90 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 6.26 0.00 0.00 0.00 38 E2a_E4a KnownJunction 1 201.22 309.81 463.79 136.18 58.23 124.98 47.08 269.45 231.59 243.80 728.55 90.33 136.03 504.68 309.17 299.41 1151.85 138.62 1152.88 413.80 488.35 267.16 477.61 39 E2a_E5a KnownJunction 0 34.08 38.48 37.49 27.87 12.48 26.75 12.01 15.65 26.27 19.05 10.11 0.00 6.82 7.24 9.64 0.00 21.22 10.24 12.71 31.19 13.41 13.47 7.51 40 E3_Aa NovelBoundary 0 14.22 9.01 15.20 16.61 15.79 2.44 16.83 6.41 5.61 6.63 2.21 0.00 6.98 3.00 10.01 16.41 9.07 11.65 4.24 5.56 5.50 5.45 7.34 41 ER3a ExonRegion 0 2.94 5.50 1.79 3.83 3.13 4.01 1.73 0.42 0.00 0.58 1.70 5.28 2.03 2.23 10.08 5.21 0.62 1.22 6.67 4.42 2.91 2.30 6.89 42 E3_Da NovelBoundary 0 13.93 0.00 18.89 21.91 8.66 14.25 13.78 36.64 35.30 38.76 2.26 0.00 0.00 0.00 0.00 16.92 9.26 28.52 8.47 6.46 9.20 3.06 4.18 43 E3a_E4a KnownJunction 0 0.00 9.34 3.25 0.00 8.23 8.63 0.00 0.00 0.00 1.26 0.00 6.30 0.00 2.47 4.45 0.00 0.00 0.00 3.67 3.26 0.00 2.94 4.35 44 E4_Aa NovelBoundary 0 50.08 17.69 7.84 2.66 19.69 0.00 6.49 1.64 2.46 1.21 2.53 5.85 0.00 0.00 0.00 11.79 3.74 2.57 4.71 9.01 3.15 3.06 12.29 45 ER4a ExonRegion 0 183.86 722.16 363.94 141.60 145.73 162.82 141.56 158.92 117.79 114.50 188.59 150.96 200.74 274.02 386.42 199.46 290.31 128.20 274.27 166.00 145.66 192.27 209.78 46 E4a_E5a KnownJunction 0 141.73 587.20 351.85 154.79 201.44 335.15 392.83 135.13 89.93 100.20 84.13 144.50 207.62 170.05 310.28 47.34 124.54 38.43 52.43 143.30 81.18 124.92 13.06 47 I4_AR2 ActiveIntronRegion 0 10.65 8.64 4.62 6.55 3.67 1.68 4.98 1.77 3.95 6.61 0.88 3.26 6.88 0.00 3.28 1.29 0.00 0.00 1.54 1.43 0.03 1.55 0.00 48 ER5a ExonRegion 1 280.08 673.21 477.05 228.52 202.72 188.99 206.58 173.57 143.16 157.30 160.52 297.25 442.82 293.72 328.10 112.81 218.75 59.54 92.71 207.56 82.20 230.71 47.21 49 E5a_E7a KnownJunction 0 447.71 855.83 622.18 307.55 178.95 134.64 208.23 212.02 188.16 196.60 186.26 380.82 350.95 373.42 510.66 118.17 253.39 54.64 117.84 240.33 77.53 296.80 88.78 50 ER6a ExonRegion 0 0.16 0.10 0.09 0.00 0.14 0.00 0.24 0.00 0.10 0.09 0.00 0.00 0.00 0.21 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.08 51 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER7a ExonRegion 0 268.94 720.29 499.25 239.06 268.44 125.62 186.99 182.10 178.62 157.16 179.74 306.34 354.16 268.26 384.71 129.66 215.82 66.92 73.48 196.11 86.86 203.21 79.16 53 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E7a_E9a KnownJunction 0 268.57 873.00 464.29 209.66 242.44 100.17 125.11 175.67 154.57 167.43 221.00 335.51 374.33 252.99 393.60 152.69 224.96 56.17 55.44 185.23 82.47 219.89 81.09 55 ER8a ExonRegion 0 5.10 1.88 4.40 4.60 4.04 0.55 6.38 5.45 3.36 4.38 0.29 3.30 5.99 0.78 1.78 1.79 1.00 0.83 4.30 1.93 0.00 1.26 1.33 56 E8_Da NovelBoundary 0 9.33 16.05 9.17 18.18 7.98 2.90 14.18 8.75 13.57 4.24 0.00 0.00 6.17 0.00 0.00 0.00 0.00 0.00 4.33 2.56 0.00 3.00 3.76 57 E9_Aa NovelBoundary 0 0.00 6.31 5.80 12.75 4.24 0.00 16.56 3.70 5.70 0.00 0.00 0.00 6.01 0.00 4.82 4.36 0.00 0.00 4.80 8.50 0.00 0.00 4.35 58 ER9a ExonRegion 0 275.57 946.18 510.76 242.40 187.52 86.74 113.44 202.78 173.11 186.35 233.46 354.32 482.89 313.49 469.65 192.30 263.08 58.57 87.41 219.74 90.44 265.40 103.55 59 E9_Da NovelBoundary 1 259.01 817.16 371.72 188.95 111.12 55.20 90.27 131.31 128.15 120.72 138.51 206.32 387.47 179.18 221.28 142.18 185.32 24.00 80.85 119.72 54.73 110.28 46.10 60 E9b_E10a KnownJunction 1 166.99 616.21 496.43 263.57 156.88 61.10 102.50 214.94 163.34 186.50 178.47 380.07 478.54 383.90 486.68 88.52 246.28 60.81 105.79 223.84 153.39 259.08 53.61 61 E9b_E12b KnownJunction 0 0.00 24.34 7.16 1.90 0.00 0.00 0.00 5.01 1.79 1.67 0.00 0.00 6.82 0.00 0.00 4.27 7.95 0.00 0.00 0.00 0.00 13.10 3.59 62 ER9b ExonRegion 1 244.94 915.11 532.70 257.96 163.71 75.52 116.03 213.23 186.05 191.01 218.24 419.17 577.73 383.88 483.72 159.14 292.88 65.18 114.09 222.05 143.24 254.19 70.21 63 ER10a ExonRegion 0 131.87 308.10 395.30 196.20 141.11 73.20 107.67 190.85 153.01 151.60 183.00 259.32 186.08 249.62 366.33 106.33 194.32 49.22 65.47 162.77 109.23 193.37 67.93 64 E10_Da KnownBoundary 1 54.90 60.52 197.95 118.00 40.58 55.59 29.50 107.00 79.51 75.08 63.38 158.30 51.13 61.33 158.97 39.56 60.40 24.95 30.87 92.62 28.05 74.15 39.18 65 E10_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E10b_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 0.00 0.00 0.00 67 E10b_E12b KnownJunction 0 177.59 239.56 350.58 189.65 164.52 85.52 126.13 223.07 118.78 116.15 142.62 210.52 140.09 246.22 227.58 71.61 149.79 57.62 58.17 155.51 56.71 319.39 74.35 68 E10_Dc KnownBoundary 0 0.00 2.76 0.00 0.00 7.72 0.00 0.00 2.51 3.47 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 3.07 0.00 0.00 0.00 69 ER10b ExonRegion 0 141.34 186.19 313.69 180.20 137.95 79.67 97.24 192.05 127.35 118.00 149.48 244.86 134.45 222.50 262.08 77.94 156.98 47.43 58.75 151.77 72.97 266.69 74.72 70 ER10c ExonRegion 0 4.23 0.00 6.13 1.36 10.70 0.00 1.32 0.00 3.71 2.29 0.00 12.99 4.69 1.62 5.80 8.92 0.00 1.85 3.19 4.26 0.00 0.00 2.94 71 ER10d ExonRegion 0 0.68 0.00 1.80 0.72 7.16 0.00 0.74 0.25 1.05 1.28 0.00 1.15 0.69 0.00 0.09 5.68 0.00 1.47 0.56 3.19 0.00 0.00 1.30 72 E10d_E12a KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E11_Aa NovelBoundary 0 30.67 3.09 8.72 11.09 0.00 7.55 13.56 8.34 11.69 8.14 2.00 6.15 14.77 7.24 4.45 15.47 0.00 0.00 0.00 14.25 0.00 2.57 7.43 74 ER11a ExonRegion 0 6.31 3.52 7.26 2.27 4.74 5.20 8.75 2.72 5.09 7.53 2.81 2.80 1.37 2.03 3.38 2.11 2.34 2.58 4.25 5.94 2.34 0.69 3.14 75 E11a_E12b KnownJunction 0 3.70 0.00 1.83 2.66 0.00 0.00 2.12 0.00 0.00 2.77 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 I11 Intron 0 10.81 14.36 7.29 11.51 13.42 1.02 7.99 6.94 6.33 2.86 0.90 2.39 6.61 1.98 4.09 2.21 2.45 2.56 1.48 7.12 1.22 1.75 2.73 77 I11_SR1 SilentIntronRegion 0 10.85 14.41 7.32 11.55 13.47 1.03 8.02 6.96 6.35 2.87 0.90 2.40 6.64 1.99 4.11 2.22 2.46 2.57 1.48 7.14 1.23 1.75 2.74 78 ER12a ExonRegion 0 12.27 6.62 10.09 8.26 10.42 5.24 9.11 7.25 6.72 3.98 1.81 2.76 9.78 2.52 7.29 2.35 4.02 2.96 2.40 7.86 2.16 2.43 3.20 79 E12_Ab KnownBoundary 0 3.11 18.29 37.31 17.71 16.89 0.00 7.91 14.66 10.45 9.80 0.00 0.00 20.13 0.00 0.00 0.00 0.00 7.30 4.80 10.29 0.00 5.57 0.00 80 ER12b ExonRegion 0 71.52 118.80 150.02 100.79 113.84 52.61 63.45 112.39 62.68 64.60 54.98 121.77 80.10 86.87 151.14 27.59 56.91 19.36 22.95 59.14 17.75 134.18 23.46 81 E12_Da KnownBoundary 0 0.00 5.79 4.79 7.09 4.33 7.72 1.81 0.00 4.57 3.89 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 4.24 7.86 0.00 0.00 0.00 82 E12_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 E12_Dc KnownBoundary 0 0.00 3.35 1.33 10.65 0.00 0.00 4.06 6.90 1.68 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 6.39 0.00 0.00 4.35 84 ER12c ExonRegion 0 4.23 15.59 11.44 22.26 5.35 5.50 3.97 12.10 8.23 8.03 0.00 4.33 0.00 1.62 0.00 0.00 3.30 0.00 6.37 20.57 0.00 2.08 2.94 85 ER12d ExonRegion 0 1.69 8.13 8.58 17.72 2.68 5.50 3.97 8.99 7.41 6.88 0.00 0.87 0.00 1.62 0.00 0.00 3.30 0.00 6.37 11.06 0.00 2.08 2.94 86 ER12e ExonRegion 0 6.19 8.28 9.82 11.99 4.58 2.91 4.33 6.96 6.43 2.39 0.00 1.60 6.59 0.27 1.19 1.25 1.42 0.77 2.17 8.13 0.92 0.38 3.11 87 IG37_SR3 SilentIntergenicRegion 0 0.76 3.51 2.59 1.23 1.35 1.45 3.20 1.69 3.25 1.19 0.07 18.59 0.28 0.85 0.47 0.43 0.47 1.89 1.03 8.17 0.56 0.45 1.12