Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SUCLG1 Gene 0 115.75 206.00 196.70 159.45 120.96 171.45 114.74 98.20 67.69 110.37 196.63 131.42 89.85 200.88 220.06 126.39 132.68 75.75 66.48 91.42 71.07 66.84 51.44 2 491642 Transcript 0 1.35 0.64 1.04 0.90 0.68 0.35 0.37 0.33 0.24 0.32 0.61 2.58 0.00 1.16 0.87 0.75 0.00 0.64 0.00 0.75 0.00 0.00 0.01 3 393868 Transcript 0 6.03 12.61 12.84 11.94 8.27 14.84 10.87 6.34 5.49 6.49 5.09 0.93 1.68 4.45 8.24 4.86 2.30 3.57 6.36 4.04 7.97 3.81 4.81 4 442240 Transcript 0 0.00 0.00 1.22 0.57 0.00 0.03 0.00 2.16 0.49 0.00 0.07 2.81 0.00 2.39 0.05 0.00 0.12 0.00 0.00 0.94 0.00 0.00 0.00 5 295783 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 430989 Transcript 0 1.75 5.44 2.73 1.34 5.35 4.34 3.37 1.11 3.85 0.84 13.24 3.57 1.75 5.09 0.16 2.22 2.91 5.41 5.09 4.30 2.17 1.91 2.64 7 483605 Transcript 0 0.38 0.00 1.11 0.68 0.00 1.36 0.40 0.78 0.01 0.26 0.29 0.00 0.00 0.20 0.31 1.80 0.00 0.03 0.00 0.68 0.00 0.00 0.45 8 488234 Transcript 1 24.79 13.73 11.43 43.71 24.89 57.76 37.83 13.49 21.53 19.16 42.26 47.36 43.57 54.45 16.37 32.02 18.37 12.97 16.34 12.40 16.47 35.42 18.00 9 487809 Transcript 1 20.93 19.46 12.15 31.25 20.80 30.35 24.05 12.16 15.19 15.77 13.63 38.97 27.53 20.11 6.12 12.50 9.28 6.34 3.91 10.33 3.87 15.89 6.03 10 491123 Transcript 1 21.40 15.48 12.32 28.20 21.95 32.95 24.24 19.34 12.07 9.66 17.30 57.34 66.54 24.49 18.72 11.24 6.48 9.29 5.16 10.46 5.29 18.56 7.94 11 484365 Transcript 0 14.57 16.04 13.13 17.33 13.24 15.42 16.06 16.81 11.21 14.39 12.33 15.61 13.42 9.56 10.64 13.30 14.84 16.72 7.57 12.50 7.02 7.14 7.10 12 ER1a ExonRegion 0 2.38 1.93 3.12 2.70 2.03 1.04 0.25 0.98 0.71 0.97 1.83 7.73 0.00 3.48 2.62 2.25 0.00 1.92 0.00 1.18 0.00 0.00 0.03 13 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 8.43 17.09 9.57 2.66 8.51 28.90 17.96 3.29 2.17 3.48 9.62 0.00 0.00 7.52 5.70 5.05 4.59 7.13 12.73 3.21 15.94 4.64 5.42 15 E2_Ab KnownBoundary 0 25.49 81.63 5.06 3.53 21.05 50.65 26.85 0.00 1.24 2.69 41.96 0.00 0.00 37.14 22.99 3.67 23.38 1.95 33.04 18.92 33.48 18.68 17.33 16 E2_Ac KnownBoundary 1 69.72 122.15 16.08 8.19 89.90 239.46 122.86 17.50 5.12 4.92 69.18 0.00 0.00 27.02 67.74 43.15 52.36 19.36 43.01 25.89 43.74 27.86 29.96 17 E2_Ad KnownBoundary 1 223.82 380.20 116.91 78.94 140.15 625.49 254.29 66.29 48.52 85.47 241.11 6.60 6.49 112.01 195.69 188.58 221.32 171.53 122.64 136.72 155.74 96.08 108.75 18 ER2b ExonRegion 1 133.62 304.36 77.20 35.16 139.32 475.69 189.50 45.52 27.75 57.19 210.69 0.00 0.00 212.87 195.35 128.79 156.46 110.99 105.75 84.82 132.52 73.90 101.02 19 ER2c ExonRegion 1 227.10 454.30 122.29 65.55 215.40 733.34 312.19 63.78 44.34 89.57 314.29 0.00 0.00 336.84 356.27 232.42 240.31 168.51 152.26 150.64 190.40 112.51 135.67 20 ER2d ExonRegion 1 280.25 454.78 205.94 115.74 189.60 752.88 311.21 68.89 72.79 144.67 260.20 9.55 11.02 295.74 335.53 322.92 254.64 216.04 135.45 142.08 125.12 76.49 128.89 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E2a_E4a KnownJunction 0 83.87 85.84 191.03 113.27 41.85 113.17 59.66 32.49 65.42 112.34 38.06 51.02 20.45 59.80 74.05 78.53 38.06 114.70 52.24 38.54 30.21 16.10 33.29 23 ER3a ExonRegion 0 1.15 0.00 3.33 2.04 0.00 1.41 1.21 2.35 0.04 0.78 0.88 0.00 0.00 0.61 0.93 5.41 0.00 0.08 0.00 2.03 0.00 0.00 1.34 24 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4a ExonRegion 1 60.71 124.05 209.95 105.72 61.85 89.64 69.64 85.96 77.62 145.91 371.43 130.80 57.45 229.13 174.38 74.70 264.77 59.96 57.12 132.08 158.46 64.79 37.24 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 1.93 1.48 0.00 0.00 6.15 0.00 4.77 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 0.00 27 E4a_E6a KnownJunction 1 162.84 325.73 379.32 240.23 138.88 167.74 134.34 156.08 133.56 276.11 608.68 254.48 72.07 515.57 445.76 133.38 466.76 87.30 117.27 309.10 160.62 219.34 71.11 28 E5a_E6a KnownJunction 0 0.00 0.00 3.67 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.10 0.00 2.00 0.00 0.00 0.20 2.28 0.00 2.39 0.15 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 30 ER6a ExonRegion 0 144.05 363.00 446.57 355.86 191.19 274.30 160.83 177.40 145.13 244.25 445.26 236.42 125.75 469.19 527.88 365.75 318.10 262.27 170.87 289.80 181.10 140.63 134.48 31 E6_Da KnownBoundary 0 0.00 2.89 9.93 0.00 0.00 6.70 13.34 5.01 1.79 1.02 5.05 30.76 13.47 5.36 0.00 3.42 13.37 11.65 0.00 2.94 0.00 0.00 3.67 32 E6a_E7a KnownJunction 0 283.38 739.54 585.43 422.22 457.39 805.73 450.33 243.69 168.52 338.84 483.23 246.38 111.19 571.49 535.88 307.61 436.75 180.20 166.22 303.48 198.12 108.87 95.35 33 ER6b ExonRegion 0 3.49 5.36 5.47 1.38 7.05 8.67 6.75 2.22 2.67 0.36 13.90 7.15 3.50 7.71 0.32 0.52 5.82 7.22 2.38 5.34 1.26 0.69 1.35 34 E6b_E7a KnownJunction 0 0.00 5.53 0.00 1.30 3.65 0.00 0.00 0.00 5.03 1.32 12.58 0.00 0.00 2.47 0.00 3.93 0.00 3.61 7.81 3.26 3.09 3.12 3.93 35 ER7a ExonRegion 0 321.52 748.28 627.52 478.89 314.54 618.33 386.57 268.60 193.74 345.18 697.47 368.19 185.40 775.46 716.64 421.73 485.57 280.75 226.86 352.25 284.35 226.62 157.85 36 E7a_E8a KnownJunction 0 535.06 880.63 808.93 518.48 465.96 548.09 377.41 352.25 224.59 378.94 807.20 626.90 283.10 1021.90 1102.91 649.06 505.00 385.85 320.39 437.26 336.01 354.54 217.08 37 ER7b ExonRegion 0 1.66 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 38 E8_Ab NovelBoundary 0 217.45 389.14 217.35 131.82 215.45 226.91 152.05 101.04 55.06 122.95 320.98 159.35 78.24 379.84 365.91 230.45 216.36 88.05 106.73 171.17 161.18 89.46 105.51 39 ER8a ExonRegion 0 394.97 733.97 777.92 527.65 439.23 513.04 321.21 353.54 240.18 402.21 802.60 477.91 234.86 979.09 1013.88 579.56 511.13 393.14 283.74 383.30 337.85 285.44 229.06 40 ER8b ExonRegion 0 350.36 708.31 771.23 529.43 487.40 484.97 338.93 347.95 246.07 407.50 811.67 362.34 180.39 911.88 901.17 511.66 553.28 383.76 236.94 364.48 339.88 249.86 216.63 41 E8_Db NovelBoundary 1 185.59 327.70 404.39 313.85 288.29 227.88 228.14 185.65 146.73 226.42 395.31 158.75 80.19 358.41 353.67 214.64 301.17 172.11 96.29 177.63 171.43 127.92 81.09 42 ER8c ExonRegion 0 382.64 798.98 730.84 529.09 545.43 555.45 377.19 325.68 238.96 412.89 872.45 296.45 221.42 884.72 752.49 550.78 623.52 331.72 229.85 330.23 342.73 216.36 193.35 43 E8_Dc NovelBoundary 1 0.00 13.42 11.53 3.46 4.33 0.00 3.97 0.00 12.27 3.25 17.27 20.11 49.02 25.13 10.75 15.47 18.23 4.52 0.00 27.16 14.58 9.12 8.02 44 E8c_E9b KnownJunction 0 478.97 1046.46 795.86 568.59 675.64 736.22 553.18 319.56 250.49 408.60 892.38 275.19 327.58 879.46 930.96 594.72 665.82 279.60 246.03 314.41 282.26 235.50 166.54 45 ER8d ExonRegion 0 369.09 821.88 751.72 542.95 569.11 604.45 454.32 322.95 246.93 408.03 891.36 292.74 260.84 859.53 790.48 518.75 636.06 289.95 211.70 313.26 307.67 213.96 169.20 46 I8 Intron 0 7.90 20.37 6.44 25.77 14.46 22.02 28.50 10.17 15.51 14.10 31.55 45.34 42.34 34.03 5.59 22.13 18.20 15.87 5.81 22.36 10.53 17.05 10.87 47 I8_SR1 SilentIntronRegion 0 2.93 10.36 5.12 13.75 8.67 13.62 22.51 6.47 7.64 7.03 22.37 26.97 31.57 26.51 4.77 14.61 14.30 8.97 3.59 15.49 6.17 11.00 8.76 48 I8_AR1 ActiveIntronRegion 0 5.16 9.26 2.93 16.24 7.69 23.74 28.97 5.60 10.05 11.13 19.19 46.23 43.44 31.09 4.29 16.21 9.19 9.03 4.08 17.54 10.08 13.70 5.59 49 I8_SR2 SilentIntronRegion 0 6.85 20.46 5.91 13.87 10.23 29.45 30.37 10.37 13.66 20.10 21.26 83.53 44.42 25.41 2.90 15.39 13.40 18.69 0.00 14.14 6.61 17.89 14.16 50 I8_AR2 ActiveIntronRegion 1 12.06 35.49 6.17 30.22 20.63 29.52 37.00 10.89 16.73 19.23 42.82 49.54 43.51 41.41 4.45 35.40 23.78 24.08 8.38 27.55 16.85 22.99 14.05 51 I8_SR3 SilentIntronRegion 0 7.04 23.62 5.23 21.01 21.47 27.94 26.38 7.69 18.99 14.35 26.97 45.07 38.20 35.23 5.60 26.84 17.79 22.78 7.15 23.50 14.81 16.84 11.44 52 I8_AR3 ActiveIntronRegion 1 14.92 29.51 11.23 50.09 19.49 27.49 34.24 19.38 28.91 23.58 47.45 73.50 62.91 43.09 8.58 25.91 25.43 21.19 7.99 32.53 11.58 24.89 14.38 53 E9_Aa NovelBoundary 0 7.48 19.14 37.46 72.52 10.78 16.92 29.15 28.55 43.29 46.23 42.43 45.46 53.41 32.90 15.20 12.39 8.98 6.30 13.65 26.97 7.78 42.86 7.26 54 ER9a ExonRegion 1 41.87 38.93 24.31 61.14 38.92 60.69 48.10 22.59 30.38 31.55 27.27 77.94 55.06 38.60 12.24 22.03 18.56 12.68 7.82 20.66 7.74 29.69 12.05 55 E9_Ab KnownBoundary 1 20.60 52.95 21.47 64.03 39.64 65.42 48.00 30.03 34.20 25.25 30.96 83.58 126.45 52.80 24.97 38.45 25.53 20.69 8.19 20.96 27.37 32.94 20.15 56 ER9b ExonRegion 0 383.88 1010.25 763.98 599.74 453.94 688.71 451.74 362.35 270.91 449.46 775.09 410.36 316.61 826.05 865.06 492.16 491.28 308.95 221.09 356.68 287.62 230.49 204.36 57 E9_Da KnownBoundary 0 29.12 21.18 4.97 37.66 37.78 28.05 38.60 20.13 24.68 15.69 36.90 42.76 20.29 44.50 6.30 7.95 17.58 9.45 4.80 18.79 23.54 27.74 4.10 58 E9a_E11a KnownJunction 0 473.12 1179.33 802.22 585.57 401.27 655.42 419.24 380.80 255.50 477.42 631.11 282.69 330.01 697.93 1020.21 423.22 443.20 308.45 238.50 438.98 203.00 281.55 172.43 59 ER9c ExonRegion 1 24.79 13.73 11.43 43.71 24.89 57.76 37.83 13.49 21.53 19.16 42.26 47.36 43.57 54.45 16.37 32.02 18.37 12.97 16.34 12.40 16.47 35.42 18.00 60 E9_Db NovelBoundary 1 35.04 32.10 12.89 42.12 10.19 49.46 55.20 32.08 34.52 29.98 59.07 106.38 67.69 58.10 4.45 61.69 8.70 13.31 8.94 18.28 8.71 23.51 20.06 61 I9 Intron 0 19.84 27.75 19.13 48.43 31.72 57.89 35.41 25.21 23.85 21.67 46.36 67.72 64.30 40.64 16.51 34.41 21.38 13.55 9.22 18.78 18.83 36.19 21.86 62 I9_AR1 ActiveIntronRegion 0 19.95 27.90 19.23 48.69 31.88 58.21 35.60 25.34 23.98 21.79 46.60 68.07 64.65 40.85 16.60 34.60 21.50 13.63 9.27 18.87 18.92 36.38 21.98 63 E10_Aa NovelBoundary 1 53.05 29.27 21.05 58.27 72.58 98.81 66.55 34.09 12.64 15.96 25.85 69.77 66.39 27.96 8.90 19.74 14.21 4.35 4.80 20.07 9.39 25.35 16.13 64 ER10a ExonRegion 1 39.39 28.39 20.98 54.76 35.93 60.74 44.01 34.04 22.35 19.31 32.35 102.22 112.63 42.21 23.35 22.49 12.97 8.91 10.33 20.92 7.49 31.12 15.87 65 E10_Da NovelBoundary 1 71.27 30.46 25.46 72.58 61.80 100.17 55.29 29.04 24.86 37.10 51.70 168.96 84.41 69.34 28.68 46.14 14.21 14.47 8.00 27.10 17.42 40.60 19.12 66 E10a_E11a KnownJunction 0 3.41 2.57 3.67 1.63 7.98 5.17 4.46 4.64 1.79 0.00 2.26 12.45 20.45 6.77 14.09 0.00 0.00 9.66 0.00 0.00 3.09 6.00 0.00 67 I10 Intron 0 59.88 52.96 28.30 81.39 43.96 84.15 53.36 41.33 32.10 21.20 36.11 71.44 68.88 34.45 29.84 23.04 21.24 10.83 7.41 21.60 8.54 35.69 14.57 68 I10_AR1 ActiveIntronRegion 0 36.94 37.62 16.90 39.46 24.80 54.74 35.69 23.25 24.41 16.59 34.87 73.52 39.47 38.45 33.20 22.67 24.76 13.24 12.46 28.08 16.16 31.83 20.78 69 I10_SR1 SilentIntronRegion 0 48.61 40.29 35.96 91.71 47.39 91.37 58.18 43.45 39.58 27.91 46.09 71.55 76.95 41.08 31.73 28.99 28.97 13.98 6.04 24.21 9.69 34.35 13.64 70 I10_AR2 ActiveIntronRegion 0 78.31 77.28 54.22 150.26 38.46 111.86 77.78 57.04 46.16 28.10 36.24 77.93 109.63 37.96 13.78 27.12 29.71 14.09 0.00 15.16 8.54 46.36 5.87 71 I10_SR2 SilentIntronRegion 0 85.14 74.56 27.36 96.02 53.15 95.29 59.36 50.40 29.41 17.48 27.43 70.38 78.62 25.61 26.65 17.51 11.39 6.23 5.87 15.38 2.72 39.36 11.97 72 E11_Aa NovelBoundary 1 151.80 121.62 43.61 102.72 75.13 73.93 85.37 39.10 25.84 40.29 23.32 108.34 113.30 41.20 37.46 19.74 25.62 9.62 3.58 21.03 0.00 44.70 8.71 73 ER11a ExonRegion 0 527.35 919.70 881.78 686.37 542.47 722.96 496.19 432.58 276.76 493.84 834.97 486.32 367.52 916.16 1004.48 554.71 566.23 297.35 251.02 357.98 226.65 264.13 217.95 74 E11a_E12b KnownJunction 0 692.27 1014.03 1022.58 761.04 389.98 492.95 298.36 458.22 277.86 584.76 924.29 687.97 312.15 937.43 1226.53 595.40 516.97 331.46 325.00 411.31 209.92 287.37 241.15 75 I11_SR1 SilentIntronRegion 0 1.93 0.00 0.44 3.32 0.05 2.42 7.68 3.12 4.31 7.50 14.32 9.59 21.86 10.03 0.00 15.84 8.64 3.86 0.00 2.37 1.00 4.87 1.34 76 I11_AR2 ActiveIntronRegion 0 4.23 2.03 3.54 5.75 2.68 10.39 19.57 4.80 4.12 4.21 14.60 10.10 23.45 14.44 5.80 8.92 16.87 5.95 0.00 3.78 9.55 0.00 0.00 77 ER12a ExonRegion 0 14.57 16.04 13.13 17.33 13.24 15.42 16.06 16.81 11.21 14.39 12.33 15.61 13.42 9.56 10.64 13.30 14.84 16.72 7.57 12.50 7.02 7.14 7.10 78 E12_Ab KnownBoundary 0 26.15 16.25 14.13 16.41 20.46 26.52 14.57 12.69 4.83 7.98 34.90 12.60 26.78 9.42 4.45 8.29 16.74 9.08 9.60 15.40 2.97 14.45 13.06 79 ER12b ExonRegion 0 508.84 1025.75 922.25 666.00 667.60 705.44 497.00 461.87 266.21 511.09 832.32 566.77 378.60 797.66 932.09 494.76 454.51 294.53 234.45 353.13 252.61 235.19 187.46 80 E12a_E13a KnownJunction 0 471.42 791.96 901.89 681.50 571.56 591.25 515.56 458.02 299.51 470.14 629.95 706.28 475.46 782.80 1137.90 543.11 301.26 234.87 289.33 320.80 171.56 203.17 249.60 81 ER12c ExonRegion 0 0.00 0.00 0.00 1.36 2.68 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 0.00 2.97 0.00 0.00 0.00 0.00 0.00 2.08 0.00 82 I12 Intron 0 41.84 43.51 26.57 32.52 33.78 24.19 36.82 25.67 12.84 13.23 17.91 18.39 17.04 9.80 19.82 10.57 11.63 9.96 4.02 11.31 3.88 15.50 7.42 83 I12_AR1 ActiveIntronRegion 0 36.99 50.56 17.49 25.83 26.75 24.11 34.03 18.50 10.73 10.81 17.43 13.62 13.09 9.20 14.83 10.40 10.79 11.01 2.95 9.73 4.14 12.23 8.26 84 I12_SR1 SilentIntronRegion 0 50.57 29.11 53.03 59.51 48.14 18.45 43.38 33.64 19.73 21.25 15.00 36.48 22.66 15.24 30.68 10.89 11.34 9.53 7.54 11.84 1.53 22.20 5.23 85 I12_AR2 ActiveIntronRegion 0 50.94 31.17 41.04 41.53 46.46 25.78 41.74 40.08 16.06 16.89 19.75 25.03 24.71 9.93 28.64 10.91 13.62 7.74 5.64 14.78 3.85 21.40 6.05 86 E13_Aa NovelBoundary 0 18.23 8.95 17.95 26.24 36.50 19.08 56.26 22.34 12.85 11.87 7.53 18.76 13.47 17.31 25.96 8.72 4.21 6.88 9.22 11.82 5.50 21.25 3.33 87 ER13a ExonRegion 0 410.07 502.61 744.18 586.72 334.34 366.67 264.13 342.05 221.70 312.85 604.88 448.86 255.88 558.27 876.95 380.93 440.23 134.27 278.88 219.91 217.71 222.02 151.11 88 E13_Da KnownBoundary 1 455.27 651.00 312.02 281.45 235.23 155.54 283.97 187.13 102.95 177.93 280.33 284.04 160.54 371.83 944.81 163.46 272.84 9.99 142.12 185.17 121.95 155.84 83.40 89 ER13b ExonRegion 1 174.97 210.14 160.40 163.32 126.92 78.67 98.15 71.15 55.13 76.73 96.71 95.39 64.25 129.33 402.21 71.43 94.52 11.89 58.40 72.55 41.65 47.30 40.23 90 ER13c ExonRegion 0 3.63 8.13 16.10 21.22 8.03 0.79 3.78 9.38 8.82 9.50 0.55 1.86 3.35 1.39 10.78 4.67 0.00 0.00 0.00 4.86 0.00 2.98 4.20