Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO41 Gene 0 3.93 7.33 29.22 17.25 5.23 35.58 12.85 19.06 32.53 34.32 49.99 9.83 8.28 63.84 27.35 33.44 33.88 58.00 27.86 37.26 8.87 6.94 8.77 2 295133 Transcript 0 10.61 19.45 70.82 45.02 12.83 84.96 30.74 49.15 83.71 81.10 109.44 24.88 18.09 129.72 59.84 70.40 77.99 135.34 68.65 94.84 17.91 15.18 21.14 3 IG30 Intergenic 0 2.24 4.59 7.05 6.26 3.23 5.86 10.35 2.98 2.52 3.87 6.86 9.76 8.28 10.20 6.42 8.07 9.50 7.06 6.53 11.02 1.54 1.22 3.29 4 IG30_SR1 SilentIntergenicRegion 0 2.24 4.59 7.05 6.27 3.23 5.86 10.35 2.98 2.52 3.87 6.87 9.77 8.28 10.21 6.42 8.07 9.50 7.06 6.54 11.02 1.54 1.22 3.29 5 ER1a ExonRegion 0 4.62 3.32 4.01 1.10 2.91 5.88 13.07 1.41 0.00 1.85 6.51 12.15 12.86 14.69 15.16 17.96 16.43 7.07 12.23 15.19 0.00 0.00 0.00 6 E1_Da NovelBoundary 0 13.11 13.22 18.27 23.57 0.00 21.29 13.12 8.21 7.52 17.70 12.21 6.00 27.27 25.90 0.00 16.66 17.02 24.13 49.04 32.53 0.00 2.27 4.27 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 I1 Intron 0 5.51 5.75 15.61 13.13 5.17 13.91 12.80 5.75 5.06 11.82 15.66 14.09 10.42 20.46 13.96 17.01 16.93 17.01 15.39 18.03 2.95 3.87 6.99 9 I1_SR1 SilentIntronRegion 0 4.18 4.54 4.13 2.35 4.36 24.95 8.50 2.57 1.03 3.31 11.91 12.48 9.05 17.87 20.38 5.88 5.60 5.54 16.45 8.21 1.90 0.00 3.07 10 I1_AR1 ActiveIntronRegion 0 7.10 8.72 17.14 19.04 6.13 14.80 17.44 7.87 7.74 15.87 19.39 16.38 12.56 21.71 16.10 23.08 20.27 21.14 16.09 24.85 3.12 5.17 10.57 11 I1_AR2 ActiveIntronRegion 0 3.57 1.91 15.41 6.85 4.01 11.00 7.20 3.38 2.07 7.69 11.23 11.29 7.76 19.25 10.08 10.59 14.21 13.26 14.33 10.36 2.89 2.73 2.75 12 E2_Aa NovelBoundary 0 3.48 2.83 11.15 11.65 4.33 8.52 15.94 16.02 16.49 35.78 63.44 18.61 19.80 60.98 41.66 67.50 48.25 125.89 56.28 52.67 2.90 3.12 18.44 13 ER2a ExonRegion 0 1.56 3.45 22.70 9.99 3.76 29.12 10.36 15.93 29.42 35.74 64.94 16.10 13.65 87.74 31.34 36.11 42.80 63.98 31.53 44.24 12.97 5.07 8.02 14 E2_Da NovelBoundary 0 0.00 2.89 16.94 2.86 0.00 4.88 11.97 2.46 1.65 5.40 7.58 6.30 6.33 0.00 15.20 7.69 0.00 10.28 0.00 2.68 2.41 0.00 3.59 15 E2a_E3a KnownJunction 0 7.33 5.72 71.64 49.04 6.88 89.21 29.06 55.45 90.02 79.81 132.30 37.06 44.48 156.16 109.65 65.54 57.60 193.42 123.49 110.77 18.16 5.27 31.41 16 ER3a ExonRegion 0 4.12 9.03 45.13 20.41 9.20 49.00 12.57 28.14 58.60 64.86 85.25 16.38 22.08 120.39 64.89 41.27 42.47 93.00 48.57 77.59 15.55 10.93 12.89 17 E3_Da NovelBoundary 0 9.63 20.19 23.51 28.70 0.00 9.37 15.06 8.83 7.99 16.22 39.17 7.65 19.15 66.81 46.60 47.25 30.01 60.81 18.45 51.58 8.65 7.96 11.61 18 E3a_E4a KnownJunction 0 3.78 22.69 32.29 17.85 14.60 64.68 22.17 33.72 74.51 56.22 40.12 12.00 6.17 64.81 18.67 29.48 30.57 105.46 28.80 53.43 0.00 2.63 21.51 19 E3a_E5a NovelJunction 0 0.00 0.00 6.80 1.80 0.00 0.00 0.00 0.00 0.00 7.76 22.06 7.35 0.00 15.01 13.35 7.52 13.37 19.52 4.42 0.00 8.09 7.53 4.18 20 I3 Intron 0 5.90 4.32 24.74 11.60 6.75 15.10 8.79 7.52 11.24 17.70 55.71 11.53 18.21 96.52 51.13 45.38 38.12 40.65 35.12 19.77 7.90 6.92 14.04 21 I3_SR1 SilentIntronRegion 0 5.93 4.34 24.87 11.66 6.79 15.18 8.84 7.56 11.30 17.79 56.00 11.59 18.31 97.02 51.39 45.62 38.32 40.86 35.31 19.87 7.94 6.95 14.11 22 E4_Aa NovelBoundary 0 0.00 2.57 31.96 14.98 8.23 10.45 8.04 0.00 3.18 13.19 37.96 28.96 26.78 52.74 44.13 30.50 37.59 40.83 4.80 14.19 6.18 5.27 15.02 23 ER4a ExonRegion 0 0.00 13.99 21.51 14.38 2.57 63.41 18.02 19.55 50.26 45.07 52.37 25.33 13.88 86.85 21.13 29.72 24.67 76.48 30.52 75.27 6.10 4.05 7.02 24 E4_Da NovelBoundary 0 21.56 0.00 33.29 37.32 4.16 28.68 4.24 15.40 18.61 34.63 55.96 18.16 19.97 152.33 44.50 29.22 24.68 82.70 67.67 18.28 5.31 9.12 28.85 25 E4a_E5a KnownJunction 0 0.00 6.05 18.95 16.08 0.00 76.09 17.44 25.42 47.11 56.65 23.85 0.00 0.00 49.44 8.78 8.20 21.51 75.94 21.08 48.64 0.00 5.33 0.00 26 I4 Intron 0 6.00 4.12 23.29 16.44 4.87 8.16 7.23 10.43 10.06 19.02 35.61 16.44 5.36 81.71 32.50 43.31 28.73 31.61 22.56 23.25 6.69 3.79 8.32 27 I4_SR1 SilentIntronRegion 0 6.04 4.15 23.47 16.56 4.91 8.23 7.29 10.51 10.14 19.17 35.88 16.57 5.40 82.34 32.76 43.65 28.96 31.86 22.74 23.43 6.74 3.83 8.39 28 E5_Aa NovelBoundary 0 6.89 8.22 41.45 23.34 3.90 0.00 3.75 13.18 20.17 11.63 51.22 17.56 8.28 68.87 45.99 55.54 29.17 42.57 45.08 32.98 6.30 2.27 7.51 29 ER5a ExonRegion 0 4.12 15.20 65.85 28.29 4.56 56.58 21.53 36.97 63.70 67.18 94.93 12.06 5.66 137.31 60.28 69.13 61.76 106.73 49.84 72.46 20.80 12.82 18.24 30 E5a_E6a KnownJunction 0 16.52 27.82 50.65 24.21 0.00 62.46 17.80 23.82 45.75 61.49 78.23 11.70 13.64 116.55 23.61 26.75 49.46 74.66 62.40 84.43 27.31 13.17 15.62 31 ER6a ExonRegion 0 11.82 20.63 79.05 46.13 16.35 89.16 28.85 47.81 88.06 83.13 125.81 16.71 16.14 171.67 76.48 83.50 91.22 196.04 77.67 112.10 21.01 19.37 20.03 32 E6a_E7a KnownJunction 0 7.33 15.13 118.33 69.26 15.79 104.43 46.19 78.29 129.45 127.27 180.84 35.11 26.78 202.31 88.51 140.22 113.70 289.80 112.66 152.83 25.58 26.70 18.35 33 ER7a ExonRegion 0 10.44 13.52 89.97 57.05 17.85 85.81 33.03 65.22 95.97 109.34 143.53 41.47 25.67 174.20 83.44 89.68 102.13 205.05 94.76 122.25 22.66 23.74 25.54 34 E7_Da NovelBoundary 0 3.78 0.00 1.69 3.30 0.00 2.73 2.21 1.89 3.27 0.00 1.95 0.00 0.00 0.00 0.00 3.59 4.77 6.22 14.31 3.00 0.00 0.00 3.50 35 E7a_E8a KnownJunction 0 24.30 28.94 83.79 68.99 30.90 91.71 54.36 62.84 110.33 118.11 154.25 42.31 27.11 136.85 64.78 82.20 86.30 195.66 156.52 102.20 18.22 21.86 38.58 36 ER8a ExonRegion 0 13.25 20.23 94.64 62.43 19.17 85.42 32.21 72.38 108.39 106.69 134.58 24.84 22.78 174.16 83.00 81.08 113.65 160.16 95.58 117.79 19.67 19.61 25.62 37 E8a_E9a KnownJunction 0 16.30 22.69 75.69 55.47 11.80 72.06 24.64 62.02 94.82 111.61 154.14 11.55 32.47 107.42 80.47 96.04 160.73 110.35 41.98 79.77 25.08 11.76 14.77 38 ER9a ExonRegion 0 13.78 25.95 114.89 76.52 22.97 109.17 35.00 62.89 103.98 112.16 112.09 30.35 25.80 165.86 74.13 101.73 107.28 199.86 101.14 118.31 21.21 19.40 26.61 39 E9a_E10a KnownJunction 0 19.78 32.69 110.52 71.85 15.37 118.80 61.92 59.68 125.66 121.77 104.61 32.11 19.48 145.80 80.60 120.99 104.63 217.26 103.25 158.13 16.25 14.45 23.90 40 E10_Aa NovelBoundary 0 3.48 0.00 2.90 0.00 0.00 0.00 0.00 2.55 3.01 3.06 0.00 0.00 0.00 0.00 0.00 3.50 12.81 5.76 0.00 0.00 0.00 0.00 0.00 41 ER10a ExonRegion 0 8.98 18.93 66.47 40.10 12.28 94.12 43.23 54.28 94.26 96.51 94.71 25.25 14.90 134.46 74.14 82.77 103.52 134.82 47.33 104.47 14.57 21.10 29.17 42 E10a_E11a KnownJunction 0 17.04 34.01 114.25 62.20 20.46 128.73 41.16 59.48 114.00 102.77 101.55 41.86 12.66 156.57 76.52 113.82 102.48 164.07 70.68 145.99 16.00 34.47 34.91 43 E11_Aa NovelBoundary 0 0.00 0.00 0.00 1.86 0.00 10.45 0.00 9.28 1.30 3.06 2.32 0.00 0.00 5.18 0.00 0.00 12.53 3.98 0.00 5.88 0.00 0.00 3.59 44 ER11a ExonRegion 0 19.20 27.82 114.35 67.05 16.36 121.99 38.00 73.55 129.63 105.41 165.60 32.89 21.41 181.67 89.43 106.70 113.81 175.18 84.04 127.15 28.95 28.44 34.54 45 E11_Da NovelBoundary 0 3.63 0.00 6.92 12.02 3.48 9.77 10.51 8.58 1.45 8.46 10.21 12.45 0.00 26.31 0.00 15.38 8.51 15.50 9.32 20.07 5.00 0.00 7.77 46 E11a_E12a KnownJunction 0 30.23 41.24 125.63 80.74 24.79 115.84 27.25 74.18 160.91 96.41 185.73 43.36 19.15 167.93 85.42 86.05 115.38 137.96 73.79 159.67 34.22 11.88 23.05 47 I11 Intron 0 4.58 4.06 11.35 10.59 2.82 6.51 7.57 8.86 8.48 8.35 14.58 10.87 17.55 26.03 10.95 12.85 17.59 18.35 7.59 12.28 1.83 1.16 1.30 48 I11_SR1 SilentIntronRegion 0 4.59 4.07 11.37 10.62 2.83 6.53 7.58 8.88 8.50 8.37 14.62 10.89 17.58 26.08 10.97 12.88 17.62 18.39 7.61 12.31 1.84 1.16 1.31 49 E12_Aa NovelBoundary 0 6.96 2.43 12.80 3.46 0.00 23.74 0.00 11.46 1.50 12.52 7.69 0.00 0.00 9.42 19.78 0.00 7.39 11.28 0.00 11.70 0.00 0.00 0.00 50 ER12a ExonRegion 0 15.05 35.39 128.70 77.18 27.38 189.88 66.30 103.30 135.93 115.40 238.43 43.74 33.19 232.94 92.11 129.19 145.32 184.36 108.60 146.53 38.20 31.00 40.30 51 E12a_E13a KnownJunction 0 13.41 38.02 109.34 100.42 22.41 202.16 67.44 105.07 129.08 137.24 241.06 54.32 18.99 232.86 83.69 105.96 129.87 192.55 128.57 130.14 41.76 33.31 54.55 52 ER13a ExonRegion 0 2.35 3.88 12.25 8.67 2.50 18.30 6.88 7.37 12.80 14.88 20.54 3.21 3.26 24.43 9.74 15.92 12.49 23.67 11.21 11.53 3.49 3.21 3.79 53 IG29_AR2 ActiveIntergenicRegion 0 0.00 2.97 3.39 4.61 2.47 1.83 5.60 8.64 3.52 3.44 0.00 0.00 0.00 0.00 6.03 9.60 13.20 5.54 0.00 6.87 2.20 2.08 0.00