Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DUSP11 Gene 0 49.50 53.17 47.98 40.59 52.33 71.57 52.91 37.81 35.04 32.49 90.79 116.00 79.79 92.15 63.82 233.74 69.88 23.39 29.29 27.43 39.53 58.35 35.58 2 377706 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 432812 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 272444 Transcript 0 1.66 4.36 1.05 2.92 3.44 1.70 3.97 5.43 1.50 0.00 0.00 0.00 3.69 0.00 4.14 10.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 443070 Transcript 0 12.26 12.69 19.15 16.42 18.96 13.83 20.61 10.33 12.84 12.04 7.42 16.15 11.54 8.21 8.07 28.48 7.95 4.68 4.64 10.69 5.12 7.38 7.07 6 452812 Transcript 0 5.29 5.08 2.66 2.32 2.83 2.29 6.06 1.61 1.15 1.23 1.41 4.62 6.02 1.55 1.04 6.81 2.06 0.38 3.32 5.07 1.83 0.65 2.13 7 480948 Transcript 0 0.00 0.00 0.00 8.56 19.52 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.89 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.88 0.00 8 477458 Transcript 0 0.48 0.00 1.25 0.00 0.61 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.66 0.69 0.00 0.00 0.00 0.97 0.01 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 2.50 0.00 43.54 6.07 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.70 0.00 5.47 0.00 94.93 9.16 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 1 63.50 75.57 25.02 18.85 45.49 143.90 80.95 13.20 12.12 17.30 75.13 5.57 0.83 111.34 53.59 432.14 65.35 23.43 47.30 26.66 64.53 49.26 46.39 12 E1_Ac KnownBoundary 0 0.00 3.35 18.36 15.22 0.00 19.31 5.34 6.49 11.43 13.78 38.80 6.00 6.82 37.67 38.94 113.56 59.65 6.76 11.95 11.12 50.53 16.96 8.45 13 ER1c ExonRegion 1 8.77 24.11 56.07 37.63 3.92 23.80 12.03 16.40 31.62 29.53 157.21 15.01 26.37 176.24 62.99 331.46 116.19 38.41 50.36 42.08 130.73 68.73 58.41 14 E1a_E3a KnownJunction 1 27.19 66.96 89.88 77.45 16.04 52.47 32.77 49.12 51.62 51.49 180.31 48.02 19.48 391.26 207.43 895.92 219.26 104.67 127.53 87.95 120.84 242.79 190.62 15 ER1d ExonRegion 1 14.82 46.26 74.75 63.03 17.39 46.76 25.82 43.64 43.23 47.31 158.98 21.65 18.76 358.93 181.33 707.37 165.87 86.84 101.14 76.60 122.86 203.66 140.96 16 ER2a ExonRegion 0 0.96 0.00 2.49 0.00 1.22 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.32 1.38 0.00 0.00 0.00 1.94 0.02 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 1 22.59 63.95 74.01 61.90 77.14 118.21 50.28 55.92 55.66 56.32 169.36 69.33 36.10 195.45 138.42 605.34 124.52 73.93 66.68 43.87 106.18 146.23 92.70 19 E3a_E4a KnownJunction 0 37.64 74.99 90.89 63.69 184.04 290.06 172.15 52.04 65.02 64.41 185.78 93.93 75.00 103.60 129.80 473.64 78.26 35.73 16.94 43.78 85.38 107.89 45.84 20 ER4a ExonRegion 0 114.48 160.88 124.29 118.28 122.60 248.04 156.73 106.43 94.95 80.70 271.21 198.30 125.14 207.11 155.09 451.88 154.12 41.01 39.72 69.94 81.59 192.27 57.42 21 E4a_E5a KnownJunction 0 195.15 141.29 125.04 137.78 109.85 126.06 126.35 123.30 111.78 85.13 251.38 261.99 249.01 198.07 161.69 413.22 142.96 26.03 34.64 51.77 43.74 228.40 75.97 22 ER5a ExonRegion 0 171.78 175.13 147.20 153.48 171.87 230.50 153.08 133.45 134.25 103.24 300.35 463.22 300.01 268.46 200.54 489.71 174.42 36.24 47.60 75.87 45.18 217.27 66.07 23 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E5a_E7a KnownJunction 0 205.89 220.29 162.12 149.60 306.71 357.92 251.46 141.25 106.16 133.40 367.62 474.00 308.75 300.43 246.49 464.41 229.73 29.93 116.71 96.39 51.77 270.16 55.14 25 ER6a ExonRegion 0 10.57 10.17 5.32 4.64 5.66 4.58 12.12 3.22 2.30 2.46 2.82 9.24 12.04 3.11 2.07 13.62 4.12 0.77 6.63 10.14 3.65 1.30 4.27 26 ER7a ExonRegion 0 105.90 125.52 123.72 117.59 239.19 331.80 176.11 99.71 86.42 93.24 292.98 530.25 329.84 260.52 168.27 508.53 224.89 44.95 98.75 63.90 60.48 240.01 74.62 27 E7_Da NovelBoundary 0 3.56 12.37 20.90 10.16 20.29 11.19 29.85 13.55 19.97 5.13 11.16 11.55 0.00 10.07 4.45 24.18 9.16 1.82 8.75 5.94 8.53 8.27 17.41 28 E7a_E8a KnownJunction 0 0.00 2.50 1.57 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.70 6.01 2.47 0.00 4.36 0.00 2.32 8.38 2.68 0.00 0.00 3.41 29 E7a_E9a KnownJunction 0 88.76 110.77 113.01 75.35 187.01 223.45 115.49 69.78 72.57 60.71 198.79 405.13 324.33 226.38 156.25 596.08 152.88 37.60 48.66 54.14 78.95 166.74 86.99 30 E7a_E10a NovelJunction 0 6.82 26.05 84.95 55.54 12.73 23.51 20.89 68.43 46.44 40.05 2.16 0.00 21.43 0.00 4.45 24.61 8.42 20.15 8.75 17.19 0.00 3.12 4.10 31 E8_Aa NovelBoundary 0 106.17 75.32 40.98 52.24 92.70 108.01 137.92 35.90 34.84 27.32 26.69 43.96 25.49 8.01 18.79 77.59 29.92 37.39 46.40 62.96 26.13 16.84 50.53 32 ER8a ExonRegion 1 6.38 11.66 8.08 6.52 9.30 6.90 12.57 6.37 9.36 4.58 7.67 18.87 22.12 19.12 24.67 30.88 13.70 7.87 23.44 11.59 14.02 8.59 18.77 33 E8_Da KnownBoundary 1 163.88 138.59 155.52 232.90 191.68 99.66 158.54 262.09 225.34 222.26 56.75 6.90 22.89 13.24 75.04 161.15 157.08 349.91 146.07 173.22 58.75 65.52 167.23 34 ER8b ExonRegion 0 12.26 12.69 19.15 16.42 18.96 13.83 20.61 10.33 12.84 12.04 7.42 16.15 11.54 8.21 8.07 28.48 7.95 4.68 4.64 10.69 5.12 7.38 7.07 35 E9_Aa NovelBoundary 0 23.12 33.81 6.92 9.26 0.00 8.29 16.16 17.83 13.19 15.63 2.63 18.91 6.82 2.71 4.45 16.58 0.00 0.00 0.00 2.81 2.90 13.17 0.00 36 ER9a ExonRegion 1 92.54 98.69 116.20 94.62 147.39 187.79 101.66 104.04 83.67 80.31 297.79 638.09 523.69 307.48 227.78 947.10 189.91 88.53 62.01 77.68 88.62 163.40 151.71 37 E9_Da NovelBoundary 0 10.30 40.91 10.61 24.54 0.00 8.35 21.51 14.50 4.98 8.76 0.00 30.61 5.84 0.00 5.81 11.96 4.77 0.00 4.71 3.13 0.00 3.12 3.67 38 E9a_E10a KnownJunction 1 156.92 125.83 125.90 108.54 179.80 189.38 140.53 131.40 83.25 79.24 398.05 813.87 666.19 434.05 383.83 1628.89 263.67 123.95 130.73 94.92 86.92 308.49 231.85 39 I9 Intron 0 9.66 22.60 9.78 18.54 14.87 10.92 12.35 11.25 8.04 10.17 3.45 21.18 7.12 2.05 3.35 7.08 1.31 0.73 0.63 5.91 1.31 6.20 1.75 40 I9_SR1 SilentIntronRegion 0 9.74 22.78 9.86 18.68 14.98 11.01 12.45 11.33 8.09 10.25 3.47 21.34 7.17 2.06 3.38 7.13 1.32 0.74 0.64 5.96 1.32 6.25 1.76 41 E10_Aa NovelBoundary 0 42.97 43.54 22.68 34.89 17.57 19.93 3.89 4.76 20.02 13.40 10.11 18.31 14.77 2.47 5.93 0.00 0.00 8.17 0.00 6.20 0.00 9.12 16.48 42 ER10a ExonRegion 0 103.89 105.97 157.53 136.86 166.12 161.22 118.24 149.51 113.12 107.46 425.51 694.76 510.43 486.47 336.30 1398.88 316.52 119.74 178.20 118.85 95.62 382.62 227.35 43 E10_Da KnownBoundary 0 108.46 125.24 219.06 195.21 199.83 177.80 151.79 176.58 145.92 133.34 454.80 710.33 442.18 552.24 361.09 1172.68 394.20 108.94 227.30 171.75 115.09 405.61 209.82 44 ER10b ExonRegion 0 93.55 122.52 210.52 165.79 141.81 192.96 139.41 171.38 156.80 137.74 590.74 685.35 443.68 470.79 264.81 939.64 507.27 101.16 165.72 126.75 194.37 267.21 142.57 45 E10_Db NovelBoundary 0 3.26 5.66 15.82 5.19 11.21 2.90 13.87 5.09 1.48 1.48 0.00 18.91 20.29 0.00 0.00 12.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E10b_E11a KnownJunction 0 133.06 120.70 237.34 169.78 144.57 217.15 168.30 179.49 172.74 152.66 559.14 631.11 487.14 453.00 229.06 760.31 563.72 82.58 115.86 86.22 249.15 205.81 85.11 47 E10b_E12a KnownJunction 0 0.00 0.00 0.00 8.56 19.52 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.89 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.88 0.00 48 ER11a ExonRegion 0 183.68 190.89 212.37 161.18 218.02 289.84 183.18 175.94 148.56 140.01 449.13 576.21 422.53 411.76 271.41 1136.09 358.12 118.26 134.51 112.28 207.26 222.32 173.74 49 E11_Da NovelBoundary 0 3.78 3.09 17.39 13.15 11.38 8.12 11.31 11.62 12.76 15.28 12.58 25.51 13.64 27.84 17.80 64.09 13.84 13.80 12.05 12.02 6.12 29.33 23.73 50 E11a_E12a KnownJunction 0 167.44 204.77 179.18 111.47 203.06 290.29 200.54 152.14 110.70 109.38 366.30 458.85 292.84 378.19 217.07 932.92 319.68 105.21 73.41 94.73 191.39 189.64 156.04 51 I11 Intron 0 9.68 9.74 9.63 12.89 19.15 10.06 13.68 7.90 8.42 8.55 5.72 13.09 17.23 15.61 11.40 32.14 8.17 1.98 3.60 7.09 3.44 11.54 5.69 52 I11_SR1 SilentIntronRegion 0 9.75 9.81 9.71 12.99 19.29 10.14 13.78 7.96 8.48 8.61 5.76 13.19 17.35 15.73 11.49 32.38 8.22 2.00 3.63 7.14 3.46 11.62 5.74 53 E12_Aa NovelBoundary 0 41.27 27.56 9.49 21.58 11.80 31.63 47.25 20.45 9.75 23.53 2.68 27.16 6.82 9.65 25.59 51.27 12.62 3.40 3.58 8.76 13.78 17.27 7.17 54 ER12a ExonRegion 0 114.98 101.80 78.62 66.70 92.63 121.42 98.93 78.29 60.99 65.33 169.80 247.50 148.72 210.58 150.42 509.51 157.86 55.11 58.83 38.51 102.76 98.97 70.84 55 E12_Da KnownBoundary 1 135.95 113.14 48.73 31.63 61.63 112.04 111.86 30.23 17.82 12.49 25.74 91.53 32.47 134.26 93.45 329.66 17.77 26.78 30.02 17.39 7.10 74.40 27.15 56 ER12b ExonRegion 0 62.90 58.08 15.34 10.18 23.89 29.62 33.23 10.94 10.63 8.18 4.96 24.65 14.77 14.21 19.77 34.73 2.22 2.89 4.38 2.01 0.09 11.33 2.84 57 ER12c ExonRegion 0 1.66 4.36 1.05 2.92 3.44 1.70 3.97 5.43 1.50 0.00 0.00 0.00 3.69 0.00 4.14 10.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 IG38 Intergenic 0 7.52 11.61 8.34 13.40 12.22 9.31 18.98 16.01 18.45 14.74 2.21 12.28 9.24 1.05 4.81 17.34 3.77 1.87 5.66 11.34 3.08 2.11 10.43 59 IG38_SR1 SilentIntergenicRegion 0 7.56 11.67 8.38 13.46 12.28 9.34 19.07 16.09 18.54 14.82 2.22 12.34 9.29 1.06 4.83 17.43 3.79 1.88 5.69 11.39 3.09 2.13 10.48