Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SMYD5 Gene 0 80.41 76.13 132.86 115.96 38.28 131.71 39.95 40.92 30.11 35.74 128.33 32.51 28.99 104.22 92.33 85.07 102.30 85.14 57.11 52.81 78.12 58.10 54.24 2 413491 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 389501 Transcript 0 112.94 124.52 190.49 153.41 60.98 196.67 68.08 58.41 41.10 55.01 219.08 74.83 62.44 174.85 133.40 127.83 153.75 136.13 74.54 67.58 133.29 86.63 93.28 4 258100 Transcript 0 0.00 0.00 1.57 1.43 0.00 7.72 0.00 0.00 1.59 2.95 0.00 0.00 0.00 6.95 0.00 4.19 0.00 0.00 18.64 2.81 11.43 7.41 8.54 5 443900 Transcript 0 2.50 6.04 0.90 3.16 2.17 3.11 2.69 0.58 0.67 0.95 2.50 0.00 1.37 1.86 2.11 2.14 5.91 0.90 4.47 2.35 3.16 0.00 2.54 6 474652 Transcript 0 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 491204 Transcript 0 1.82 1.53 6.60 7.16 4.83 6.11 2.13 0.00 1.48 4.52 7.62 0.00 3.52 9.34 4.51 4.87 0.18 11.65 7.08 8.33 4.53 4.40 4.00 8 477038 Transcript 0 2.85 4.97 4.84 3.19 4.47 2.95 6.86 1.84 0.04 1.43 6.40 1.70 0.00 4.39 1.62 1.90 5.19 8.03 3.13 4.64 6.54 1.74 2.46 9 486518 Transcript 0 2.92 2.10 4.70 4.20 2.11 2.86 3.40 4.22 2.33 2.07 3.03 1.10 0.22 0.36 0.91 0.75 2.90 6.51 1.69 4.97 2.77 1.81 2.34 10 ER1a ExonRegion 0 0.00 0.00 0.00 1.52 0.00 0.43 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.86 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.86 0.00 11 ER1b ExonRegion 1 10.94 19.58 3.29 5.39 12.67 129.05 22.64 0.81 0.91 1.03 36.57 0.00 1.36 38.45 32.45 28.74 40.25 7.11 18.08 11.08 28.61 11.14 14.11 12 E1a_E3a KnownJunction 0 6.96 3.35 19.25 17.98 11.21 39.01 2.25 2.51 6.25 1.67 18.48 0.00 0.00 15.95 29.05 54.69 18.14 31.13 21.18 14.96 23.66 11.63 28.43 13 ER2a ExonRegion 0 0.00 3.90 0.00 1.14 1.90 2.22 0.55 0.00 0.00 0.00 0.00 0.00 4.10 1.69 0.60 0.00 0.00 0.00 7.03 0.00 1.47 0.00 2.94 14 ER2b ExonRegion 0 9.33 11.74 2.29 4.68 2.58 9.14 4.58 0.39 0.88 0.80 10.07 0.00 1.22 5.95 5.25 2.92 4.74 3.86 12.99 9.60 3.45 0.94 4.32 15 E2_Da KnownBoundary 0 21.04 37.36 6.53 19.41 7.47 12.15 5.74 4.81 3.44 2.04 17.48 0.00 0.00 5.36 14.09 11.88 17.11 11.15 4.05 18.86 13.22 0.00 8.02 16 E2a_E3a KnownJunction 0 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2c ExonRegion 0 7.50 14.24 2.70 8.33 4.62 7.13 7.52 1.73 2.02 1.38 7.51 0.00 0.00 3.88 5.74 6.42 13.05 2.69 6.37 7.06 8.01 0.00 4.67 18 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 14.80 19.41 12.00 28.91 10.87 34.53 11.58 8.92 8.95 7.93 11.93 13.75 18.27 12.56 8.69 11.35 11.51 15.44 20.44 15.97 11.74 9.67 11.80 20 I2_AR1 ActiveIntronRegion 0 5.67 10.89 0.83 6.61 5.64 19.57 4.26 2.35 1.68 2.88 6.92 3.25 3.14 12.25 10.34 5.39 6.66 9.21 8.22 18.92 8.72 6.73 2.67 21 I2_SR1 SilentIntronRegion 0 11.43 14.77 8.12 26.89 8.45 33.14 11.79 8.35 9.10 6.81 12.92 19.06 26.23 13.99 7.86 12.68 14.20 15.94 22.57 14.50 9.47 9.74 9.85 22 I2_AR2 ActiveIntronRegion 0 14.64 32.12 17.73 34.85 12.72 36.96 12.87 8.39 10.56 10.56 12.72 13.77 11.12 12.34 10.10 9.71 8.29 13.82 19.84 18.18 13.19 8.68 12.67 23 I2_SR2 SilentIntronRegion 0 25.10 17.92 17.24 32.17 15.71 38.68 11.39 12.43 8.50 8.79 9.94 3.77 11.32 9.58 8.70 11.53 10.05 17.64 19.05 16.30 16.19 11.37 17.57 24 E3_Aa NovelBoundary 0 31.34 12.83 22.38 71.02 16.13 37.08 10.51 20.09 10.47 17.33 10.63 12.45 7.30 11.60 4.45 14.36 24.59 15.09 24.94 25.63 10.69 3.12 20.32 25 ER3a ExonRegion 0 22.62 16.12 82.84 51.96 16.42 40.70 11.66 29.26 21.14 20.64 112.50 17.32 15.96 65.37 65.19 67.49 92.09 41.13 36.12 41.89 71.95 44.17 41.98 26 E3_Da NovelBoundary 0 11.19 6.18 10.91 37.26 14.86 33.50 14.66 6.16 7.58 5.24 9.00 0.00 0.00 0.00 4.94 4.27 24.50 20.89 0.00 14.32 8.83 6.06 0.00 27 E3a_E4b KnownJunction 0 0.00 2.63 10.85 2.83 0.00 2.90 0.00 0.00 1.79 2.47 2.21 0.00 0.00 7.12 0.00 3.33 4.77 1.91 9.32 2.75 0.00 2.76 3.76 28 E3a_E4c KnownJunction 0 26.00 21.51 91.66 54.64 23.94 30.04 13.78 23.74 30.09 25.73 96.13 24.61 21.59 85.06 52.66 76.90 82.94 78.14 39.53 52.67 49.36 78.20 11.95 29 E3a_E4d KnownJunction 0 0.00 0.00 1.57 1.43 0.00 7.72 0.00 0.00 1.59 2.95 0.00 0.00 0.00 6.95 0.00 4.19 0.00 0.00 18.64 2.81 11.43 7.41 8.54 30 E4_Aa NovelBoundary 0 28.00 31.51 17.59 39.42 15.79 17.26 31.31 14.83 3.47 3.06 6.79 0.00 0.00 19.01 19.28 15.89 13.00 16.58 16.09 6.07 6.12 10.47 3.16 31 ER4a ExonRegion 0 1.82 1.53 6.60 7.16 4.83 6.11 2.13 0.00 1.48 4.52 7.62 0.00 3.52 9.34 4.51 4.87 0.18 11.65 7.08 8.33 4.53 4.40 4.00 32 E4_Ab KnownBoundary 0 16.45 6.51 21.02 34.09 15.70 27.37 13.73 2.18 2.86 12.25 15.42 0.00 6.82 19.54 10.75 15.04 0.00 21.47 12.71 18.28 11.43 13.72 12.12 33 ER4b ExonRegion 0 12.25 5.85 31.85 30.91 11.70 23.25 11.54 4.00 5.15 9.38 16.38 4.02 9.95 14.99 13.51 22.22 22.01 26.45 12.26 11.00 5.68 13.91 16.64 34 E4_Ac KnownBoundary 0 2.89 9.80 16.62 36.69 15.53 15.10 12.37 3.82 4.46 2.95 5.32 0.00 6.82 14.83 0.00 7.78 3.83 8.71 13.65 5.94 3.03 13.72 3.41 35 E4_Ad KnownBoundary 0 52.45 42.16 80.78 108.91 27.16 82.68 26.94 38.69 21.41 27.64 136.72 18.61 19.15 94.24 63.91 80.75 100.05 102.22 100.71 59.89 54.43 66.62 40.89 36 ER4c ExonRegion 0 41.66 41.21 109.12 108.31 32.25 70.36 27.52 39.03 29.45 29.70 140.29 20.05 29.37 114.80 74.52 86.04 113.97 100.26 90.70 65.29 64.37 88.71 31.84 37 ER4d ExonRegion 0 56.39 80.19 136.49 120.62 33.07 203.00 44.13 52.34 33.75 46.10 192.05 22.87 28.73 108.29 87.01 100.85 132.39 123.32 84.25 63.12 92.34 59.00 64.39 38 E4a_E5a KnownJunction 1 74.90 105.64 165.90 106.55 65.11 236.85 98.97 31.05 47.74 46.63 191.42 11.25 32.30 139.50 137.22 43.66 151.19 89.50 58.92 69.35 85.50 44.82 56.51 39 ER5a ExonRegion 1 65.92 109.31 138.91 120.94 44.52 172.47 68.11 43.81 45.09 41.36 164.52 11.71 30.75 118.40 107.16 63.19 107.20 74.27 60.42 80.36 100.43 75.04 54.59 40 E5_Da KnownBoundary 1 94.02 176.15 128.20 162.15 33.96 129.02 40.85 57.18 44.68 44.24 177.26 35.56 41.07 159.75 72.44 124.16 138.38 95.30 96.10 89.80 132.20 99.38 46.52 41 ER5b ExonRegion 0 76.68 119.91 124.77 149.09 31.98 162.76 37.11 56.05 31.75 43.98 158.43 38.11 33.68 149.15 83.90 86.00 148.76 103.50 80.78 73.04 125.03 70.60 51.75 42 E5b_E6a KnownJunction 1 66.46 100.38 145.88 176.97 48.56 201.36 47.74 48.75 33.71 53.00 171.15 48.92 6.82 153.16 87.64 82.97 133.24 109.64 101.46 74.21 105.39 62.27 43.19 43 E6_Ab NovelBoundary 0 81.42 77.75 48.11 56.47 23.43 83.87 30.83 10.80 11.26 12.63 73.33 30.61 26.46 94.36 63.04 42.38 15.80 25.54 59.01 44.36 44.54 43.90 24.93 44 ER6a ExonRegion 0 89.25 106.09 160.42 162.64 35.01 177.73 39.61 47.39 31.60 48.36 152.54 43.29 27.36 165.52 106.62 76.28 116.91 107.63 98.48 75.18 98.43 63.55 53.84 45 ER6b ExonRegion 0 94.42 111.51 166.31 161.58 34.19 147.21 42.22 40.23 34.03 52.44 138.74 54.12 41.17 152.85 98.48 87.18 75.55 101.42 68.49 84.75 86.68 61.00 51.88 46 E6_Db NovelBoundary 0 77.57 126.89 167.06 131.02 36.84 124.87 52.91 30.19 31.13 47.89 107.24 50.72 45.61 99.95 83.44 75.02 54.51 91.65 32.19 102.08 85.01 40.78 51.22 47 ER6c ExonRegion 0 104.60 138.18 175.36 168.35 36.90 141.97 57.00 41.57 40.95 57.53 145.68 65.40 59.74 142.58 96.05 83.69 68.80 106.29 67.56 104.70 103.81 58.45 59.66 48 E6c_E7a KnownJunction 0 142.77 121.03 206.82 192.82 77.16 178.93 96.94 56.15 46.53 69.09 141.98 63.62 33.93 135.21 107.18 116.38 138.57 92.81 101.65 119.72 149.87 87.38 74.35 49 ER6d ExonRegion 0 97.46 124.34 189.70 173.67 56.57 148.10 72.88 46.67 45.41 62.86 154.45 60.82 41.99 132.64 91.04 96.81 109.56 103.21 72.96 113.27 118.79 70.44 64.61 50 ER7a ExonRegion 0 89.50 98.14 197.46 196.00 57.07 192.57 72.93 67.77 44.80 64.16 194.74 49.36 53.57 165.76 105.88 113.77 159.33 91.72 75.59 93.99 116.96 82.61 65.24 51 E7_Da NovelBoundary 0 83.87 63.34 138.32 115.64 40.41 78.76 60.11 40.83 18.37 42.36 100.82 16.96 31.33 82.64 26.45 89.12 102.48 57.33 33.79 34.83 53.00 45.19 45.93 52 E7b_E8a KnownJunction 0 142.77 107.15 233.20 234.84 87.27 199.49 85.15 75.29 49.04 59.90 204.89 63.62 87.66 163.87 160.08 144.41 164.38 151.10 92.24 108.60 143.82 101.53 111.40 53 ER7b ExonRegion 0 120.38 114.90 223.63 206.99 74.59 170.77 78.94 69.14 45.85 65.95 225.91 51.95 78.56 178.04 132.73 154.55 175.36 126.80 80.83 96.54 135.25 90.37 97.28 54 ER8a ExonRegion 0 86.34 113.30 183.81 165.86 62.90 178.93 57.46 70.43 46.09 53.03 204.98 86.18 79.13 156.12 109.28 140.07 164.31 141.46 55.87 101.45 120.71 71.57 80.87 55 E8a_E9a KnownJunction 1 95.72 153.53 203.98 137.18 107.73 183.25 54.85 71.72 47.45 47.87 280.54 116.29 73.05 174.00 51.67 132.70 220.76 125.85 72.00 103.55 107.86 99.63 68.97 56 ER9a ExonRegion 0 67.58 147.82 184.65 136.19 51.18 210.16 62.26 67.43 44.05 58.41 211.86 83.36 68.50 173.12 94.80 141.20 204.38 134.34 65.10 79.65 136.32 71.10 77.51 57 E9_Da KnownBoundary 0 6.67 6.64 12.27 9.76 11.97 5.00 10.55 5.91 2.58 5.37 9.37 6.30 0.00 4.59 8.90 8.12 17.02 15.50 3.76 6.14 9.33 0.00 7.85 58 E9a_E10a KnownJunction 0 74.24 138.92 171.96 122.40 33.36 203.35 77.20 75.58 36.20 46.23 165.04 84.93 103.56 166.87 148.34 108.26 140.81 112.46 79.63 60.21 127.20 60.56 99.11 59 ER9b ExonRegion 0 2.85 4.97 4.84 3.19 4.47 2.95 6.86 1.84 0.04 1.43 6.40 1.70 0.00 4.39 1.62 1.90 5.19 8.03 3.13 4.64 6.54 1.74 2.46 60 ER10a ExonRegion 0 77.88 129.88 175.45 156.83 37.94 217.33 67.97 68.31 44.01 53.95 226.87 84.40 47.60 168.94 119.36 130.38 179.36 156.39 61.68 91.55 126.91 86.40 102.10 61 E10a_E11a KnownJunction 0 131.88 100.51 190.89 144.20 61.12 184.50 78.26 48.34 38.17 49.69 230.80 61.67 27.27 166.05 158.60 114.59 169.52 144.51 60.33 69.48 125.78 121.43 111.48 62 ER11a ExonRegion 0 108.28 101.79 201.20 152.71 71.07 196.09 65.73 58.34 41.58 64.39 243.51 64.79 41.14 198.00 133.36 133.12 150.10 153.36 77.79 71.89 147.53 87.25 109.69 63 E11a_E12a KnownJunction 0 94.83 129.52 192.42 171.87 97.54 207.15 69.42 70.61 46.27 73.79 237.80 55.82 60.55 200.19 122.01 145.35 142.59 145.21 112.66 48.00 151.91 75.32 82.97 64 E12_Aa NovelBoundary 0 20.89 16.38 40.33 18.45 4.33 17.89 12.59 18.03 5.96 4.84 8.05 0.00 0.00 0.00 0.00 3.67 0.00 2.45 4.80 3.20 2.97 0.00 0.00 65 ER12a ExonRegion 0 131.27 121.37 181.05 155.24 84.19 197.66 65.00 50.93 41.17 55.45 254.76 100.26 82.25 196.35 124.27 130.05 182.77 149.03 81.31 76.39 141.45 79.88 77.87 66 E12a_E13b KnownJunction 0 154.99 168.65 211.79 150.13 47.54 192.90 69.20 37.46 37.33 47.60 231.69 111.34 104.86 164.52 115.71 142.61 132.68 111.26 42.07 55.29 147.46 97.30 86.81 67 ER13a ExonRegion 0 2.92 2.10 4.70 4.20 2.11 2.86 3.40 4.22 2.33 2.07 3.03 1.10 0.22 0.36 0.91 0.75 2.90 6.51 1.69 4.97 2.77 1.81 2.34 68 E13_Ab KnownBoundary 0 0.00 0.00 1.51 3.46 0.00 2.90 2.16 1.64 6.02 2.36 5.05 6.15 0.00 0.00 0.00 0.00 4.39 11.03 3.76 2.81 5.19 0.00 0.00 69 ER13b ExonRegion 0 83.12 77.60 150.56 107.14 29.66 121.29 34.82 33.09 24.97 33.56 141.93 50.72 49.31 107.77 71.95 99.52 82.85 88.61 55.24 43.80 96.37 65.54 47.70 70 E13a_E14a KnownJunction 0 127.50 72.55 226.04 165.68 45.50 171.09 52.51 55.78 43.00 56.09 206.84 84.63 19.80 138.21 90.61 119.46 124.64 126.43 79.44 43.46 87.66 56.09 47.55 71 ER14a ExonRegion 0 135.28 99.50 153.58 120.82 49.10 213.15 61.06 47.19 27.32 38.33 178.12 74.81 62.77 154.61 96.08 138.13 163.39 95.67 98.41 50.94 133.79 67.16 64.13 72 E14_Da KnownBoundary 0 63.12 71.30 93.46 65.46 59.34 161.38 59.97 25.01 26.22 11.63 101.39 62.87 33.11 143.33 105.45 89.29 93.78 60.85 89.41 35.22 89.70 54.99 51.56 73 ER14b ExonRegion 0 130.20 105.51 199.14 173.90 55.08 174.36 51.88 57.74 44.09 48.98 162.18 35.46 32.32 137.92 145.56 118.29 132.14 116.79 80.87 67.80 98.06 84.89 76.18