Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MCEE Gene 0 37.14 22.87 22.37 29.01 19.94 21.77 32.39 13.07 14.76 14.78 23.31 30.98 25.08 30.22 50.85 35.84 29.06 26.62 13.47 21.14 40.02 18.73 22.17 2 486135 Transcript 0 2.45 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.64 0.00 0.00 0.54 0.97 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 3 244217 Transcript 0 87.09 45.81 52.82 48.94 27.55 51.05 46.17 15.67 17.93 27.01 58.25 21.46 23.54 68.13 106.93 56.78 78.31 24.23 22.12 29.21 89.08 58.66 56.72 4 494660 Transcript 0 5.75 4.94 3.15 3.63 1.79 4.82 8.56 4.73 6.15 8.84 6.49 0.00 3.28 6.10 10.53 18.58 8.40 24.99 3.77 6.01 16.58 1.80 11.49 5 466481 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 413592 Transcript 0 3.78 0.00 0.00 3.33 0.00 0.00 0.00 0.00 5.32 1.34 4.63 0.00 0.00 6.71 31.77 8.20 0.00 5.02 4.80 3.20 6.30 0.00 0.00 7 462609 Transcript 0 11.61 4.56 1.19 1.42 5.85 2.51 5.91 0.92 0.66 1.96 2.50 10.28 11.34 3.18 9.05 4.65 4.08 4.54 2.13 4.18 6.30 3.16 3.80 8 ER1a ExonRegion 0 1.41 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.29 0.00 0.00 1.08 1.93 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 9 ER1b ExonRegion 0 33.31 12.02 0.53 2.01 14.31 27.59 30.57 0.15 0.64 1.60 18.49 0.00 0.00 22.53 41.75 23.52 12.34 3.53 4.02 8.97 21.46 5.25 4.21 10 ER1c ExonRegion 1 104.77 33.20 7.32 17.44 42.58 88.40 77.33 11.23 11.88 15.65 62.59 0.00 6.21 83.88 134.65 121.16 73.69 59.78 21.45 42.62 110.19 39.22 82.74 11 E1_Da KnownBoundary 1 53.27 12.76 13.07 15.42 24.11 48.55 72.38 14.87 9.66 18.29 16.74 0.00 6.82 24.66 39.56 118.86 35.62 99.70 25.22 36.69 52.26 12.19 75.12 12 E1a_E1e KnownJunction 0 3.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E2a KnownJunction 1 119.06 27.23 10.32 22.24 28.52 74.39 37.23 6.57 10.27 9.37 63.33 0.00 6.49 46.50 47.22 69.47 88.17 21.80 26.54 21.28 102.67 55.97 67.69 14 ER1d ExonRegion 0 5.75 4.94 3.15 3.63 1.79 4.82 8.56 4.73 6.15 8.84 6.49 0.00 3.28 6.10 10.53 18.58 8.40 24.99 3.77 6.01 16.58 1.80 11.49 15 E1_Ad KnownBoundary 0 0.00 9.27 3.05 8.36 0.00 0.00 4.06 2.09 11.75 12.81 16.90 0.00 0.00 17.60 18.05 15.47 13.74 4.44 0.00 5.94 36.08 2.33 0.00 16 ER1e ExonRegion 0 13.29 13.30 13.67 26.11 11.93 18.01 28.76 11.27 16.74 16.61 13.52 10.27 8.68 25.43 37.92 43.76 23.79 35.71 15.91 19.45 39.38 6.84 22.78 17 E1_Ae KnownBoundary 0 50.97 27.56 28.62 30.93 16.55 24.47 29.94 18.77 37.12 32.34 20.01 11.55 27.11 42.03 36.71 68.61 43.38 38.97 8.75 41.55 66.78 12.00 27.91 18 ER1f ExonRegion 0 51.92 25.22 32.63 39.31 14.34 10.23 24.04 20.31 25.69 20.87 28.94 23.47 27.53 47.26 50.86 37.95 43.97 42.09 24.88 25.17 52.03 20.92 28.25 19 E1_Db NovelBoundary 0 6.30 0.00 4.73 16.08 0.00 0.00 1.72 8.21 7.20 5.29 0.00 7.65 6.33 2.47 8.90 7.78 14.03 6.05 8.38 6.39 8.34 0.00 0.00 20 E1b_E2a KnownJunction 0 76.16 36.11 31.31 49.88 19.35 10.33 23.67 13.35 26.62 25.71 42.64 39.61 51.46 41.26 83.07 65.79 32.91 32.75 26.17 21.48 42.94 28.23 43.36 21 I1 Intron 0 5.36 6.30 7.23 10.17 5.00 4.61 13.28 3.52 1.92 2.44 1.67 19.05 12.75 3.24 5.98 5.32 4.38 2.89 3.01 8.22 2.08 2.56 1.42 22 I1_SR2 SilentIntronRegion 1 7.97 5.33 7.59 13.71 15.97 8.77 15.81 8.71 5.14 1.94 0.74 38.29 26.04 5.99 7.45 7.46 3.57 2.69 2.24 9.82 0.70 5.19 0.68 23 I1_AR9 ActiveIntronRegion 1 6.75 5.11 11.99 17.51 4.93 5.95 17.30 7.53 3.22 2.99 2.91 46.93 26.95 4.91 9.42 3.93 5.39 3.66 1.64 13.18 2.91 4.96 0.62 24 I1_AR10 ActiveIntronRegion 1 11.22 6.47 5.61 8.26 9.53 3.17 28.40 4.22 4.62 0.83 0.94 46.71 38.73 2.88 4.66 10.04 7.80 3.67 3.19 13.22 8.78 3.54 1.74 25 I1_SR3 SilentIntronRegion 0 5.14 5.81 8.28 10.55 4.20 2.40 10.09 2.80 1.19 3.48 1.73 13.25 8.89 1.31 5.53 4.02 2.00 2.64 1.73 8.24 1.83 2.61 1.65 26 E2_Aa NovelBoundary 0 5.93 3.09 11.56 12.59 3.90 2.84 25.39 4.23 1.39 7.31 2.68 6.30 19.80 4.89 8.90 0.00 4.77 1.62 0.00 0.00 0.00 8.27 0.00 27 ER2a ExonRegion 0 74.06 31.47 42.97 66.93 37.98 34.90 59.86 30.63 36.04 28.35 47.55 84.40 54.11 51.81 77.62 80.02 75.00 60.22 21.85 42.35 106.65 38.87 42.85 28 E2_Ab KnownBoundary 0 66.23 56.31 56.47 67.99 23.77 28.73 70.40 34.09 36.37 24.47 64.70 80.28 69.64 28.61 88.02 102.88 72.93 82.08 34.54 56.12 92.30 31.66 51.73 29 ER2b ExonRegion 0 61.79 49.42 61.93 82.76 47.55 35.39 56.45 36.80 34.06 38.54 80.32 67.18 56.79 85.10 131.71 87.34 99.62 70.44 47.09 62.50 130.05 59.87 68.43 30 E2_Da KnownBoundary 1 49.12 29.80 46.57 79.71 51.27 24.30 76.40 39.80 24.86 32.96 43.64 80.88 68.66 89.12 192.97 105.36 12.53 58.49 41.79 52.80 59.68 89.34 88.27 31 E2a_E7a KnownJunction 0 3.78 0.00 0.00 3.33 0.00 0.00 0.00 0.00 5.32 1.34 4.63 0.00 0.00 6.71 31.77 8.20 0.00 5.02 4.80 3.20 6.30 0.00 0.00 32 E2_Db KnownBoundary 0 99.65 50.78 51.48 56.50 56.54 22.26 74.15 32.65 39.29 16.14 52.59 96.18 67.20 74.99 173.81 102.79 62.55 39.51 32.28 45.89 79.82 41.58 70.17 33 ER2c ExonRegion 1 74.38 44.64 68.15 88.00 59.63 24.89 86.44 48.89 44.52 34.13 64.98 90.30 82.41 90.80 193.28 119.17 41.97 64.23 32.01 60.59 92.77 77.39 96.35 34 ER2d ExonRegion 0 54.50 57.62 66.28 81.09 61.50 75.00 93.80 35.00 35.77 30.83 59.39 120.58 78.97 71.42 120.89 70.09 60.52 48.70 25.55 51.53 83.10 48.78 30.85 35 E2_Dc NovelBoundary 1 18.52 17.10 8.90 25.47 3.57 25.72 33.92 5.71 9.46 7.41 7.11 24.31 39.61 12.66 10.75 19.65 13.93 14.59 23.15 6.52 13.84 16.90 16.82 36 E2c_E5a NovelJunction 0 7.33 0.00 0.00 1.93 0.00 0.00 0.00 2.05 1.79 1.29 0.00 7.65 0.00 0.00 0.00 4.36 14.03 2.57 0.00 0.00 0.00 2.94 0.00 37 E2c_E6a NovelJunction 0 0.00 2.89 0.00 11.75 3.48 0.00 5.74 2.09 0.00 0.00 4.79 5.70 0.00 2.47 4.45 16.32 0.00 1.62 4.42 4.92 6.30 15.86 0.00 38 E2c_E7a KnownJunction 0 55.12 64.40 95.32 75.65 26.57 27.71 55.12 24.77 25.58 44.64 53.17 42.91 40.58 89.76 166.64 44.09 68.44 26.65 17.69 37.14 75.49 61.36 45.75 39 I2 Intron 1 15.84 8.95 6.81 18.29 10.74 7.74 25.24 6.06 5.82 9.29 6.31 33.12 40.59 9.61 12.76 14.23 14.66 11.74 6.07 18.91 16.22 7.06 9.29 40 I2_SR1 SilentIntronRegion 1 11.62 5.73 9.73 18.25 14.86 3.12 20.96 7.19 7.83 14.79 3.69 48.05 65.50 11.05 9.82 14.96 8.22 7.91 9.24 14.45 9.14 7.55 8.73 41 I2_AR1 ActiveIntronRegion 1 21.13 11.77 13.83 32.69 17.88 13.66 40.70 11.00 9.70 13.89 7.34 57.10 78.93 10.28 14.66 14.20 17.42 9.02 6.05 18.35 8.20 11.18 9.03 42 I2_SR2 SilentIntronRegion 0 15.90 9.56 5.27 15.74 10.23 6.98 22.62 3.80 5.25 8.14 5.96 31.74 34.13 8.17 10.46 11.89 14.27 10.11 6.32 17.77 13.60 6.47 8.81 43 I2_AR2 ActiveIntronRegion 0 14.50 5.85 7.24 19.46 5.55 8.53 27.46 12.52 4.90 9.54 8.83 15.69 28.70 16.45 24.60 27.42 18.50 25.71 4.61 29.87 40.54 6.48 12.34 44 I2_SR3 SilentIntronRegion 0 1.92 1.85 0.00 0.00 4.86 1.70 7.32 0.00 0.00 0.00 1.79 0.00 10.74 2.48 3.80 0.00 3.06 0.00 0.00 0.00 10.18 1.93 8.17 45 E3_Aa NovelBoundary 0 10.96 0.00 23.54 10.42 3.57 11.36 17.62 2.55 3.96 3.33 5.11 5.85 0.00 11.24 15.20 6.66 7.57 10.74 8.28 27.80 19.15 2.69 3.33 46 ER3a ExonRegion 0 7.04 0.11 0.00 0.00 0.00 0.00 0.11 0.00 0.00 1.33 0.00 0.00 4.06 0.00 3.29 0.00 0.00 0.00 0.09 0.00 0.18 0.28 0.00 47 E3_Da NovelBoundary 0 0.00 5.59 6.03 9.19 11.21 17.09 4.42 6.08 4.31 7.41 9.95 0.00 0.00 4.59 8.78 15.98 4.11 14.96 9.22 12.34 11.12 2.94 0.00 48 E3a_E4a KnownJunction 0 14.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.95 0.00 0.00 13.64 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 I3 Intron 0 10.37 7.51 6.98 14.04 8.62 12.80 17.95 6.05 5.56 8.14 4.41 8.09 14.51 11.98 14.82 15.76 11.08 13.99 7.70 19.71 19.51 5.87 7.69 50 I3_SR1 SilentIntronRegion 0 10.39 7.53 7.00 14.07 8.64 12.83 17.99 6.07 5.57 8.16 4.42 8.11 14.55 12.01 14.86 15.80 11.10 14.03 7.72 19.76 19.57 5.89 7.71 51 E4_Aa NovelBoundary 1 17.56 14.67 5.23 19.94 14.86 0.00 36.04 6.37 9.11 7.47 2.11 70.97 40.91 4.36 9.39 15.21 8.79 4.44 0.00 22.63 5.00 12.37 10.93 52 ER4a ExonRegion 1 16.56 5.95 0.36 0.02 15.82 0.00 15.52 0.05 0.09 3.03 0.00 21.27 29.64 4.05 14.55 2.20 0.00 0.56 2.26 4.72 6.42 6.04 0.04 53 E4_Da NovelBoundary 1 10.22 5.79 12.80 19.15 10.95 19.53 67.97 9.41 8.45 7.66 0.00 72.32 100.48 4.65 5.07 11.45 4.68 2.07 0.00 5.31 5.93 10.96 4.35 54 E4a_E5a KnownJunction 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 55 I4 Intron 1 24.84 16.66 12.29 26.29 23.09 9.81 31.98 9.11 11.28 9.14 4.67 62.82 56.77 9.65 14.11 15.39 13.39 3.66 6.60 18.18 7.80 10.07 9.38 56 I4_SR1 SilentIntronRegion 1 24.88 16.69 12.31 26.33 23.13 9.83 32.04 9.13 11.30 9.16 4.68 62.93 56.87 9.66 14.13 15.41 13.42 3.66 6.61 18.20 7.81 10.09 9.39 57 E5_Aa NovelBoundary 1 128.02 31.31 16.85 35.49 30.81 30.66 69.03 14.75 14.53 12.01 8.05 39.31 37.17 17.13 27.69 15.72 27.02 16.75 4.80 37.97 22.30 8.33 11.87 58 ER5a ExonRegion 1 52.39 30.39 5.27 9.01 25.99 20.04 31.60 7.27 5.17 6.95 13.94 45.36 43.40 18.75 30.58 31.28 28.06 23.62 12.92 27.59 27.65 12.65 23.75 59 E5_Da NovelBoundary 0 101.28 58.08 63.95 105.35 64.43 73.71 67.48 65.31 52.63 54.02 21.69 26.56 39.93 12.24 23.73 86.73 46.10 71.51 77.65 60.40 45.41 53.15 90.74 60 E5a_E6a KnownJunction 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 61 I5 Intron 0 35.42 7.83 4.85 12.95 11.37 5.36 12.31 7.86 4.15 7.04 3.85 23.64 28.87 8.92 10.77 16.97 5.70 4.39 3.38 11.58 8.20 8.57 7.02 62 I5_SR1 SilentIntronRegion 0 35.52 7.85 4.86 12.98 11.40 5.37 12.34 7.88 4.16 7.06 3.86 23.70 28.95 8.94 10.79 17.02 5.71 4.40 3.39 11.61 8.22 8.60 7.04 63 E6_Aa NovelBoundary 1 84.24 41.97 24.07 27.60 27.84 29.76 62.80 14.50 16.23 12.54 32.17 63.02 19.15 6.77 42.90 8.72 16.27 6.51 3.58 26.21 6.05 25.41 8.11 64 ER6a ExonRegion 0 2.25 0.00 0.64 1.02 0.64 0.00 0.06 0.00 0.00 0.00 1.75 2.44 0.00 2.64 8.19 0.00 0.00 2.41 1.79 1.11 3.99 0.82 2.29 65 E6_Da NovelBoundary 1 147.66 37.62 20.49 76.85 65.96 56.10 93.32 35.28 15.02 26.84 19.32 51.92 98.86 12.13 43.14 16.66 9.54 2.57 0.00 48.00 6.30 23.21 11.61 66 E6a_E7a KnownJunction 0 0.00 0.00 0.00 1.30 4.33 0.00 0.00 0.00 0.00 0.00 4.32 13.20 0.00 0.00 15.82 0.00 4.58 5.02 0.00 0.00 12.17 5.51 4.35 67 E7_Aa NovelBoundary 1 119.06 19.14 33.65 95.56 73.60 29.36 85.23 35.90 19.53 37.39 28.22 69.32 40.74 9.65 53.03 33.24 31.23 0.00 9.04 34.13 6.24 14.33 3.16 68 ER7a ExonRegion 0 51.86 27.73 27.00 25.52 12.96 17.83 26.75 8.62 10.49 13.39 18.00 18.40 16.16 22.98 52.39 17.59 15.78 7.28 6.21 9.67 16.39 18.40 12.94 69 E7_Da KnownBoundary 0 36.30 6.51 15.85 1.83 4.33 0.00 7.15 0.00 1.50 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER7b ExonRegion 0 10.65 3.30 0.00 0.00 1.05 2.16 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 71 IG13_AR4 ActiveIntergenicRegion 0 2.12 4.24 5.21 12.38 2.68 5.50 6.62 9.94 18.84 13.57 1.93 0.00 8.99 3.25 3.87 2.97 3.30 3.70 9.56 6.56 4.77 0.35 0.00 72 IG13_AR3 ActiveIntergenicRegion 0 0.00 4.61 7.03 16.17 4.64 5.50 4.50 8.41 21.74 10.93 1.93 3.75 4.69 3.79 8.70 2.97 9.02 1.97 3.19 6.81 6.32 0.14 8.22 73 IG13_AR2 ActiveIntergenicRegion 0 0.00 2.03 8.75 16.43 5.12 4.30 2.57 10.62 20.15 7.14 0.11 3.22 0.00 2.32 3.56 0.00 6.88 4.43 5.19 5.71 3.97 2.14 11.75 74 IG13_AR1 ActiveIntergenicRegion 0 1.39 3.33 7.09 11.98 14.20 10.97 10.00 14.30 18.52 10.71 1.27 2.92 1.31 1.15 4.20 1.95 4.87 4.64 5.44 10.04 5.88 0.74 3.41