Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PCGF1 Gene 0 40.65 33.49 102.27 149.13 42.10 100.25 37.81 51.71 56.31 63.53 54.00 24.51 13.62 38.89 63.23 41.80 37.97 67.35 50.42 34.26 38.55 40.66 48.08 2 233630 Transcript 0 22.18 27.28 108.13 175.76 24.37 57.82 29.96 47.98 52.85 71.53 23.88 10.47 7.71 7.40 14.74 22.61 10.85 98.53 35.89 38.95 13.39 13.36 16.18 3 480844 Transcript 0 9.56 2.10 0.20 2.39 2.89 3.75 1.47 0.00 1.20 0.54 12.37 0.00 0.00 0.00 0.00 5.53 3.12 0.69 0.00 0.00 7.04 2.31 13.83 4 475863 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 496911 Transcript 0 32.39 23.89 21.21 23.47 23.45 31.08 23.14 18.49 17.70 19.72 12.97 21.14 22.53 23.56 34.22 21.09 19.53 25.70 20.88 26.51 20.69 16.04 21.07 6 465993 Transcript 0 3.78 3.35 6.48 8.12 0.00 19.31 0.00 6.16 7.41 6.47 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.45 0.00 0.00 0.00 6.12 4.35 7 463744 Transcript 0 14.03 10.85 29.34 37.17 15.24 33.85 12.61 20.99 15.36 24.72 13.55 2.97 0.42 13.58 15.35 24.68 9.31 17.19 20.69 8.75 11.59 16.15 15.64 8 489914 Transcript 0 21.36 12.90 55.43 52.29 19.27 37.64 14.16 26.69 30.82 30.39 15.92 2.96 0.19 14.00 12.77 17.85 12.34 29.56 40.94 14.25 17.66 25.21 21.52 9 IG12 Intergenic 0 4.35 14.17 27.58 47.32 20.87 23.97 27.84 17.34 16.14 34.89 0.19 0.39 0.37 0.29 1.38 0.29 0.39 29.04 22.58 17.90 0.17 0.33 0.12 10 IG12_SR1 SilentIntergenicRegion 0 4.35 14.18 27.61 47.36 20.88 23.99 27.86 17.35 16.15 34.92 0.19 0.39 0.37 0.29 1.38 0.29 0.39 29.06 22.60 17.91 0.17 0.33 0.12 11 ER1a ExonRegion 0 12.79 13.65 39.75 56.56 22.67 46.93 23.88 19.73 19.78 27.07 11.81 2.48 2.26 6.85 10.94 13.01 9.18 44.31 28.01 17.69 8.93 7.85 11.10 12 E1_Da NovelBoundary 0 0.00 5.92 46.10 23.51 0.00 9.43 15.28 6.20 8.42 9.67 2.47 0.00 0.00 0.00 0.00 4.36 0.00 14.76 3.67 12.14 5.93 0.00 4.35 13 E1a_E2e KnownJunction 0 31.56 40.91 176.52 294.97 26.06 68.71 36.04 76.23 85.91 115.99 35.96 18.46 13.15 7.95 18.54 32.21 12.53 152.76 43.77 60.21 17.85 18.86 21.26 14 E2_Ac NovelBoundary 1 23.78 0.00 16.82 7.92 0.00 20.61 6.14 0.00 5.18 12.81 25.85 0.00 0.00 6.83 8.90 30.76 0.00 18.82 0.00 12.27 8.71 11.08 34.32 15 ER2a ExonRegion 0 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 16 ER2b ExonRegion 0 9.62 0.00 5.51 0.99 0.85 4.25 1.93 2.36 1.24 1.09 7.47 1.38 0.00 2.66 8.97 10.00 0.30 1.93 0.00 5.13 3.71 4.45 12.41 17 ER2c ExonRegion 0 50.43 4.17 19.02 11.79 12.24 59.23 13.70 8.30 9.60 6.34 32.38 3.79 0.00 23.75 37.86 34.77 16.01 11.18 2.87 11.17 20.11 23.49 84.58 18 E2_Da KnownBoundary 0 89.94 12.70 28.00 13.42 23.94 126.75 30.38 17.37 16.09 10.50 26.11 0.00 0.00 24.07 51.67 40.16 24.59 19.86 12.14 15.21 24.71 40.60 110.12 19 E2a_E2f KnownJunction 0 28.67 6.31 0.00 7.16 4.33 11.24 4.42 0.00 3.59 1.61 35.17 0.00 0.00 0.00 0.00 16.58 9.35 2.07 0.00 0.00 21.13 5.88 41.49 20 ER2d ExonRegion 0 24.45 10.07 36.60 47.99 14.49 134.37 20.53 22.31 25.90 22.83 21.51 1.56 2.47 15.40 27.24 19.98 18.76 32.49 16.37 10.86 21.15 29.76 51.63 21 E2_Ad KnownBoundary 0 17.34 12.30 12.89 45.32 16.13 18.40 10.38 17.66 13.40 14.88 12.53 0.00 0.00 10.12 6.30 19.05 4.21 14.30 11.86 6.46 11.06 44.21 58.64 22 E2_Ae KnownBoundary 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 4.97 1.77 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2_Af KnownBoundary 0 29.63 3.22 25.52 80.01 17.32 58.94 11.97 18.03 29.95 27.18 30.43 6.15 0.00 0.00 16.32 33.84 16.74 21.89 44.33 27.23 21.00 39.07 60.69 24 ER2e ExonRegion 1 36.51 16.78 97.72 202.39 36.79 103.61 25.49 71.73 71.64 76.27 65.24 11.91 9.38 28.02 62.38 63.16 25.58 92.85 64.50 44.68 30.85 85.95 126.28 25 ER2f ExonRegion 1 59.79 45.76 258.55 444.30 72.25 174.67 51.97 134.39 142.96 168.59 108.24 21.65 18.76 35.73 87.04 87.68 37.14 221.27 101.93 90.43 69.97 103.66 150.50 26 ER2g ExonRegion 0 44.05 52.89 300.26 420.62 100.88 191.39 64.32 140.31 146.16 162.00 183.97 60.83 37.10 84.02 123.89 79.95 140.89 167.40 100.67 90.86 124.52 80.97 104.29 27 E2_Db NovelBoundary 0 0.00 0.00 21.17 29.83 0.00 22.20 2.25 7.97 18.14 15.98 5.26 0.00 8.28 2.47 15.58 7.52 9.44 27.77 0.00 12.02 10.56 16.53 4.35 28 E2b_E3a KnownJunction 0 52.31 84.85 355.31 393.62 79.03 246.17 86.16 178.43 164.76 201.95 163.57 97.38 75.48 130.67 190.37 124.92 100.79 198.89 105.23 76.13 137.21 98.83 119.42 29 I2 Intron 1 2.06 1.98 12.46 18.47 7.82 37.53 3.44 10.88 12.56 9.99 13.19 1.16 2.78 7.20 11.64 10.62 7.51 11.63 7.24 5.53 10.74 11.51 14.31 30 I2_AR1 ActiveIntronRegion 1 2.09 2.01 12.60 18.71 7.92 38.01 3.49 11.02 12.71 10.11 13.36 1.17 2.81 7.29 11.79 10.74 7.60 11.77 7.34 5.60 10.88 11.65 14.47 31 E3_Aa NovelBoundary 0 10.74 6.25 13.93 30.73 15.20 42.19 29.50 7.02 19.07 11.07 2.26 19.51 6.82 10.83 4.45 12.22 9.07 22.18 11.67 0.00 6.30 15.06 14.77 32 ER3a ExonRegion 0 112.24 71.48 339.31 512.43 113.29 337.07 112.98 161.62 185.20 186.99 176.87 99.01 47.64 119.64 204.02 143.91 107.92 192.34 137.39 88.22 131.00 124.36 158.67 33 E3_Da KnownBoundary 0 9.11 2.96 17.24 20.54 7.22 14.42 3.53 16.76 25.23 14.88 20.11 19.21 0.00 2.47 0.00 3.25 14.03 19.61 8.09 2.75 17.67 8.02 12.46 34 E3a_E4a KnownJunction 0 139.51 131.49 284.26 410.14 137.27 431.91 198.56 114.64 162.73 148.25 151.14 91.68 39.12 126.08 180.36 100.74 55.82 144.67 72.00 68.20 102.86 97.42 98.34 35 E3a_E6a KnownJunction 0 3.78 3.35 6.48 8.12 0.00 19.31 0.00 6.16 7.41 6.47 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.45 0.00 0.00 0.00 6.12 4.35 36 ER3b ExonRegion 0 32.39 23.89 21.21 23.47 23.45 31.08 23.14 18.49 17.70 19.72 12.97 21.14 22.53 23.56 34.22 21.09 19.53 25.70 20.88 26.51 20.69 16.04 21.07 37 E3_Db NovelBoundary 0 147.66 218.18 147.75 181.20 314.35 189.61 284.41 205.99 153.18 144.41 64.02 37.51 91.71 68.16 127.70 171.49 136.98 171.45 180.52 192.90 68.76 72.56 160.74 38 E4_Aa NovelBoundary 0 36.23 3.35 29.48 23.14 15.96 51.90 33.61 14.38 15.51 13.81 29.27 0.00 0.00 19.01 13.35 20.25 4.39 17.29 4.80 5.82 16.80 8.33 7.09 39 ER4a ExonRegion 0 151.89 121.70 237.65 364.95 70.46 271.53 101.95 112.49 164.72 152.44 141.99 116.17 40.97 115.34 167.59 67.82 91.19 141.84 88.39 69.53 109.21 87.57 100.01 40 E4_Da NovelBoundary 0 18.82 10.66 27.11 33.80 11.97 18.51 10.82 11.17 14.21 21.17 7.74 19.21 6.49 14.13 10.01 20.85 12.53 19.90 3.95 2.75 5.19 7.65 16.90 41 E4a_E5a KnownJunction 0 171.44 125.04 254.19 455.39 36.67 112.21 58.21 106.67 185.44 175.65 111.61 73.37 20.29 102.42 153.53 57.59 76.11 160.80 77.84 71.91 103.48 114.20 114.13 42 I4 Intron 0 12.29 4.22 10.60 10.95 15.53 30.41 13.18 7.48 9.16 5.67 7.21 8.87 3.20 7.29 3.89 4.93 2.74 14.86 2.64 7.06 7.31 5.18 2.44 43 I4_SR1 SilentIntronRegion 0 12.58 4.32 10.86 11.19 15.92 31.17 13.50 7.66 9.35 5.81 7.39 9.09 3.28 7.47 3.99 5.05 2.81 15.20 2.71 7.22 7.49 5.31 2.50 44 E5_Aa NovelBoundary 0 23.49 3.35 37.70 29.60 16.38 23.68 6.32 23.62 11.00 28.82 7.58 12.60 6.82 19.84 33.99 21.62 4.77 14.01 18.17 3.26 3.03 8.76 8.71 45 ER5a ExonRegion 0 110.46 119.18 245.02 401.41 125.68 231.68 92.70 118.40 156.88 175.42 160.50 78.42 25.97 126.53 219.07 100.74 111.39 174.04 79.42 84.30 100.81 113.55 110.01 46 E5_Da NovelBoundary 0 38.01 11.97 37.58 59.13 0.00 35.60 12.59 16.35 20.54 31.08 16.48 6.30 0.00 4.94 6.30 15.30 4.77 38.01 9.32 5.18 6.12 10.90 4.01 47 E5a_E6a KnownJunction 0 86.24 115.83 198.66 358.40 173.51 259.57 90.80 128.85 124.83 147.15 121.35 67.97 6.82 130.50 228.07 63.40 72.56 93.77 38.97 68.97 101.38 85.18 61.63 48 E5a_E8a NovelJunction 0 0.00 0.00 0.00 3.60 0.00 0.00 0.00 6.74 4.92 0.00 7.90 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 49 I5 Intron 0 20.28 8.02 23.15 30.33 9.05 28.94 16.41 10.89 10.37 13.48 10.89 5.88 1.09 11.09 11.88 13.40 11.16 19.15 11.67 6.00 6.20 8.22 10.76 50 I5_SR1 SilentIntronRegion 0 20.49 8.11 23.41 30.67 9.15 29.26 16.60 11.00 10.49 13.63 11.01 5.95 1.10 11.21 12.01 13.55 11.29 19.37 11.80 6.05 6.27 8.31 10.83 51 E6_Aa NovelBoundary 0 53.94 24.07 48.31 51.84 37.35 37.19 17.97 11.91 14.53 23.40 32.90 0.00 0.00 2.24 26.45 31.02 18.14 8.71 16.09 17.07 18.72 27.13 8.62 52 ER6a ExonRegion 0 62.13 90.43 257.36 431.51 133.87 197.89 70.83 145.34 136.52 182.05 154.75 68.13 21.24 130.74 220.92 93.36 85.63 145.16 106.43 70.90 100.33 93.33 97.51 53 E6_Da NovelBoundary 0 17.48 12.37 13.87 19.71 23.68 69.79 21.73 2.55 8.68 14.56 7.74 0.00 0.00 9.48 18.54 4.36 4.77 2.57 26.92 6.26 6.30 12.49 8.71 54 E6a_E7b KnownJunction 0 59.64 80.38 248.81 409.44 116.30 177.74 68.81 103.92 98.15 150.40 187.68 75.92 39.93 147.86 261.82 133.21 97.15 148.61 160.66 61.62 93.16 87.50 127.62 55 E6a_E7c KnownJunction 0 0.00 0.00 0.00 10.49 0.00 0.00 0.00 0.00 1.79 4.46 5.21 0.00 0.00 2.47 0.00 0.00 4.21 0.00 12.33 5.75 0.00 0.00 0.00 56 E7_Aa NovelBoundary 0 22.15 15.79 32.11 33.66 15.03 13.69 21.02 17.46 9.78 18.32 2.21 0.00 0.00 4.83 8.90 8.63 8.88 28.93 17.41 8.12 5.87 12.25 3.76 57 ER7a ExonRegion 0 14.03 10.85 29.34 37.17 15.24 33.85 12.61 20.99 15.36 24.72 13.55 2.97 0.42 13.58 15.35 24.68 9.31 17.19 20.69 8.75 11.59 16.15 15.64 58 E7_Ab KnownBoundary 0 13.93 6.45 47.66 37.89 30.98 35.66 16.61 23.54 12.59 38.36 18.69 0.00 0.00 17.89 19.90 24.18 18.79 27.44 18.26 6.52 5.44 21.13 38.07 59 E7_Ac KnownBoundary 1 10.89 9.34 12.65 13.78 8.15 31.18 11.53 2.34 3.30 1.58 18.43 0.00 5.68 15.36 13.10 29.56 0.00 3.86 7.72 6.07 3.03 14.14 4.35 60 E7_Ad KnownBoundary 0 15.26 32.10 198.69 396.89 33.36 48.67 29.50 97.76 117.71 109.54 33.22 12.60 6.33 33.55 55.01 59.30 46.10 145.29 115.20 46.98 27.24 54.13 92.79 61 ER7b ExonRegion 0 57.47 72.82 324.30 549.14 99.41 197.27 77.10 162.87 154.20 209.31 213.51 104.41 46.90 148.04 226.07 184.39 114.90 222.58 188.79 82.73 90.01 164.04 180.04 62 ER7c ExonRegion 0 52.91 64.06 332.08 577.86 86.96 163.21 70.83 159.02 151.30 206.44 191.36 97.41 46.90 134.80 229.20 176.84 112.23 224.50 219.79 89.36 82.64 181.27 180.60 63 ER7d ExonRegion 1 57.07 66.06 335.73 525.51 64.63 150.40 60.65 155.92 148.96 200.37 196.46 34.79 33.80 127.10 217.94 127.80 130.33 189.11 207.43 115.55 102.89 145.16 152.55 64 E7_Da NovelBoundary 0 13.26 10.06 15.23 31.96 15.20 39.69 13.91 18.98 5.93 12.79 2.42 5.85 0.00 0.00 18.91 3.85 3.65 4.44 7.91 5.75 15.07 6.12 11.78 65 E7a_E8a KnownJunction 1 76.75 76.83 353.95 428.38 64.77 203.06 61.56 144.25 138.42 214.63 248.27 24.61 34.58 141.39 178.26 130.56 129.22 126.97 138.07 100.22 144.25 99.75 130.35 66 I7 Intron 0 2.45 3.14 9.17 7.85 13.44 20.55 8.70 7.96 8.53 4.62 8.96 2.76 0.00 4.02 6.92 8.04 5.10 7.81 8.61 4.93 5.09 9.66 4.54 67 I7_SR1 SilentIntronRegion 0 2.53 3.24 9.43 8.09 13.86 21.19 8.95 8.18 8.80 4.77 9.24 2.84 0.00 4.15 7.14 8.29 5.26 8.06 8.88 5.09 5.25 9.95 4.68 68 E8_Aa NovelBoundary 0 17.86 2.83 14.28 36.96 27.93 29.64 11.66 18.94 8.04 12.46 4.69 0.00 0.00 12.07 10.51 8.37 4.11 9.82 12.05 5.11 11.92 5.14 3.67 69 ER8a ExonRegion 1 31.91 64.18 276.32 335.24 54.49 128.89 50.82 142.86 140.83 166.04 191.51 27.14 30.30 103.73 168.50 107.51 111.34 103.51 89.62 67.72 91.11 108.38 104.02 70 E8_Da KnownBoundary 0 47.56 54.14 237.43 297.80 33.70 80.01 39.61 145.20 140.16 134.44 134.14 43.81 39.28 107.78 183.82 85.79 85.27 94.02 46.12 76.51 65.98 125.34 67.27 71 E8_Db KnownBoundary 0 25.12 19.54 72.20 68.56 40.58 34.53 14.26 34.09 33.54 27.78 18.43 5.40 0.00 7.59 5.07 24.44 8.51 53.56 67.67 20.84 24.77 40.23 29.19 72 E8b_E8b KnownJunction 0 22.60 28.68 161.94 229.04 60.87 64.91 26.81 85.72 99.33 111.77 73.60 31.51 7.14 71.52 154.52 35.29 21.32 40.42 43.01 34.13 55.78 76.66 26.55 73 E8b_E8c KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER8b ExonRegion 0 38.24 43.06 236.41 301.48 60.34 82.46 37.03 136.19 137.27 137.83 107.84 37.47 24.10 81.54 163.27 72.05 58.05 96.40 71.51 61.48 71.20 114.88 69.37 75 ER8c ExonRegion 0 21.36 12.90 55.43 52.29 19.27 37.64 14.16 26.69 30.82 30.39 15.92 2.96 0.19 14.00 12.77 17.85 12.34 29.56 40.94 14.25 17.66 25.21 21.52 76 E8_Ab KnownBoundary 0 0.00 2.50 7.24 10.39 3.23 13.51 2.08 9.98 8.97 5.45 6.48 0.00 0.00 0.00 4.82 3.16 11.31 2.28 11.39 0.00 5.00 2.88 8.54 77 E8_Ac KnownBoundary 0 0.00 0.00 4.76 5.26 0.00 13.97 1.99 4.23 3.21 3.95 0.00 6.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 2.35 0.00 3.84 78 ER8d ExonRegion 0 31.75 34.57 214.44 325.73 48.16 97.19 27.80 122.72 127.22 130.75 77.32 43.29 18.76 69.84 145.06 32.69 33.01 55.43 57.34 34.04 55.09 85.42 41.11 79 ER8e ExonRegion 0 197.62 82.05 202.21 319.11 69.07 194.81 47.48 104.19 103.49 118.42 66.62 60.61 18.21 67.61 118.88 92.55 58.26 48.26 113.64 44.09 59.60 125.20 115.76 80 E8_Dc KnownBoundary 0 552.32 202.33 225.07 414.97 131.58 382.45 107.85 106.63 111.72 113.52 107.71 48.17 13.64 74.17 151.93 193.80 141.28 94.56 244.62 62.89 95.38 184.13 236.97 81 ER8f ExonRegion 0 86.90 63.04 84.93 129.71 74.20 131.28 45.97 43.54 47.35 45.82 41.91 32.47 15.90 46.81 85.30 56.14 39.61 22.99 68.10 20.04 38.01 44.65 50.92 82 ER8g ExonRegion 0 1.41 9.49 6.94 11.81 5.35 7.95 9.71 2.88 1.65 5.35 0.64 1.44 0.00 1.08 4.84 4.95 0.00 2.46 0.00 0.00 2.20 0.00 3.92