Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GMCL1 Gene 0 45.90 64.42 54.21 67.91 73.60 68.71 93.87 51.74 42.06 66.52 67.62 94.66 92.08 74.83 61.45 44.80 68.11 29.23 38.38 40.78 16.71 63.22 31.91 2 282570 Transcript 0 50.35 77.13 55.91 69.26 85.32 84.92 115.05 49.17 49.69 74.72 119.52 155.96 156.04 136.88 74.75 76.53 125.83 65.35 56.51 63.57 41.39 66.91 49.93 3 468386 Transcript 0 1.48 3.38 5.07 1.17 1.50 5.38 3.84 2.49 0.52 3.46 1.53 7.55 0.54 3.04 2.49 3.90 7.75 1.98 0.91 1.79 1.24 0.84 0.41 4 471404 Transcript 0 5.45 10.52 7.35 8.19 6.86 8.43 27.15 5.44 5.45 9.13 7.29 18.83 24.15 15.97 6.34 6.17 11.84 2.55 7.02 6.48 1.85 8.38 3.24 5 495047 Transcript 0 7.87 3.90 12.65 9.65 11.13 2.21 12.47 7.83 4.07 5.57 3.49 0.69 5.96 1.05 7.23 8.48 5.97 5.19 7.84 4.78 1.53 3.26 3.21 6 ER1a ExonRegion 0 2.59 1.27 2.12 2.09 3.98 17.85 11.77 0.00 2.11 3.11 12.03 0.00 0.00 21.15 12.06 15.92 8.00 20.61 15.93 7.56 6.81 2.08 9.01 7 E1_Ab KnownBoundary 0 7.04 5.79 4.32 3.83 16.38 50.65 42.26 3.57 7.12 9.99 38.96 0.00 0.00 73.40 44.38 46.40 32.45 76.69 46.21 22.95 19.58 5.63 29.54 8 ER1b ExonRegion 0 3.97 6.53 13.75 8.26 7.87 27.67 22.10 6.43 10.11 20.06 40.96 8.20 9.63 58.91 26.82 35.60 54.97 36.53 22.32 24.34 24.47 16.50 28.16 9 E1a_E2a KnownJunction 0 24.60 33.68 20.31 15.78 32.17 15.33 51.80 22.47 19.88 47.71 48.91 37.06 20.13 81.76 29.17 37.43 67.98 45.60 23.53 12.02 18.41 66.44 47.63 10 I1 Intron 0 4.34 4.63 6.44 7.83 3.93 1.96 12.34 4.03 3.17 5.81 4.40 6.20 10.70 6.84 5.29 10.74 15.21 5.33 6.30 8.02 3.04 2.64 3.72 11 I1_SR1 SilentIntronRegion 0 4.45 4.75 6.56 8.03 4.03 2.01 12.64 4.13 3.23 5.96 4.49 6.30 10.97 6.91 5.38 10.90 15.30 5.42 6.46 8.21 3.12 2.69 3.81 12 E2_Aa NovelBoundary 0 9.33 25.32 14.93 23.67 19.44 0.00 22.39 6.49 4.46 14.61 2.68 26.41 35.87 7.42 9.64 7.18 13.65 2.49 4.52 15.02 0.00 2.76 7.51 13 ER2a ExonRegion 0 23.20 53.68 23.10 38.93 41.15 47.28 92.57 33.69 43.27 49.24 70.94 75.59 98.83 89.09 40.24 54.17 72.51 42.07 29.13 44.56 21.88 58.29 43.10 14 E2_Da NovelBoundary 1 39.64 27.17 11.27 34.00 12.31 2.50 20.84 6.45 5.76 32.85 4.74 18.91 54.05 9.54 13.35 7.69 4.39 6.59 0.00 11.63 2.66 9.12 3.24 15 E2a_E3a KnownJunction 0 6.37 37.36 19.22 26.20 60.44 56.73 106.65 36.06 45.60 54.26 91.13 128.74 87.33 86.70 32.63 69.90 81.53 54.51 39.72 39.63 24.83 52.54 50.02 16 I2 Intron 0 41.26 28.41 20.76 21.43 13.54 6.73 25.43 13.13 8.13 16.32 3.44 16.51 24.90 7.35 13.84 7.31 11.65 4.72 6.24 8.79 0.94 3.34 3.04 17 I2_SR1 SilentIntronRegion 0 60.60 31.18 19.53 19.06 8.69 2.82 22.60 14.04 14.39 21.04 5.13 22.92 32.24 5.92 17.35 14.27 13.25 2.02 3.55 10.44 1.70 5.14 3.99 18 I2_AR1 ActiveIntronRegion 1 117.42 73.21 39.69 39.71 31.53 10.95 43.99 25.36 15.48 28.08 4.11 23.64 38.04 8.12 22.23 14.02 21.05 9.20 12.43 16.36 1.34 5.71 3.25 19 I2_AR2 ActiveIntronRegion 1 129.02 81.43 23.95 37.48 28.32 3.67 36.35 21.32 14.77 12.23 7.49 43.11 30.88 10.56 31.19 16.84 21.18 23.25 21.50 15.07 2.20 1.48 0.00 20 I2_AR3 ActiveIntronRegion 0 8.82 10.39 4.97 15.37 10.70 2.04 3.68 6.05 4.73 2.48 2.26 11.55 14.85 9.56 3.55 5.28 0.37 20.84 9.20 4.49 1.35 0.00 0.00 21 I2_SR2 SilentIntronRegion 0 8.93 10.75 14.48 14.96 7.52 6.08 19.43 8.55 4.35 11.82 2.83 12.20 19.10 7.17 9.99 3.51 7.98 2.64 3.94 5.74 0.62 2.34 2.97 22 E3_Aa NovelBoundary 1 3.78 0.00 12.65 10.32 11.21 4.77 11.31 9.73 6.86 16.87 4.53 41.86 0.00 5.06 0.00 7.52 17.02 5.76 11.67 5.75 0.00 0.00 3.84 23 ER3a ExonRegion 0 9.67 28.81 27.60 35.41 40.11 41.61 47.24 43.85 44.35 59.15 115.46 128.99 112.71 124.09 53.69 58.68 100.49 56.67 60.75 53.15 39.44 74.64 51.16 24 E3a_E4a KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 2.03 2.34 0.00 4.08 2.16 0.00 0.00 2.47 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 25 E3a_E5a KnownJunction 1 40.38 46.97 33.03 51.41 69.10 41.23 71.50 46.70 44.10 69.89 156.09 166.85 220.12 215.32 74.42 57.68 118.37 55.51 34.45 93.51 58.38 61.17 46.52 26 E4_Aa NovelBoundary 0 3.26 11.38 9.61 10.32 3.74 0.00 6.40 4.56 3.10 7.55 2.68 27.76 6.01 4.94 13.23 3.93 12.34 14.18 12.52 5.88 0.00 0.00 8.28 27 ER4a ExonRegion 0 4.43 10.15 7.02 3.51 4.51 6.67 9.48 3.51 1.55 6.28 2.44 10.95 1.63 6.66 7.48 7.86 18.58 3.71 2.74 5.38 3.72 2.53 1.24 28 E4_Da NovelBoundary 0 134.62 165.50 147.48 137.48 171.65 84.44 177.27 115.34 177.17 97.59 50.07 77.28 65.58 56.33 89.38 144.58 81.07 177.54 82.07 171.68 78.70 71.09 119.94 29 E4a_E5a KnownJunction 0 0.00 0.00 6.89 0.00 0.00 9.48 0.00 1.60 0.00 0.00 0.00 11.70 0.00 0.00 0.00 3.85 4.68 0.00 0.00 0.00 0.00 0.00 0.00 30 E5_Aa NovelBoundary 1 6.96 15.52 11.89 11.62 15.37 7.72 79.14 1.52 1.30 13.62 2.05 0.00 14.12 5.47 31.89 0.00 37.40 1.58 0.00 6.33 3.15 2.45 0.00 31 ER5a ExonRegion 0 24.58 54.72 31.39 45.78 58.20 50.26 85.67 43.56 46.06 63.26 169.79 174.75 187.07 141.45 57.04 55.86 159.42 54.72 48.94 78.43 48.88 55.78 45.72 32 E5_Da KnownBoundary 0 31.04 55.58 36.93 46.15 55.69 53.89 103.69 43.50 54.51 62.94 162.67 223.57 191.06 131.50 55.63 57.34 161.85 54.51 59.67 76.57 47.51 56.15 54.63 33 ER5b ExonRegion 0 12.90 53.02 31.25 35.33 37.51 58.00 89.42 31.69 43.11 58.77 143.86 198.91 155.12 114.92 62.43 71.00 143.22 59.20 48.72 57.17 50.48 59.11 51.72 34 E5_Db NovelBoundary 0 3.78 20.26 6.27 12.42 11.80 8.69 20.09 10.06 13.83 17.00 6.95 24.76 33.60 21.90 15.95 3.59 21.79 18.12 8.28 9.08 5.93 5.82 4.18 35 E5b_E6b KnownJunction 0 6.37 55.52 39.41 32.60 47.62 59.91 109.92 32.12 37.41 47.79 98.18 139.55 144.80 67.63 43.39 68.02 135.30 49.62 60.61 46.34 55.85 59.58 37.82 36 I5 Intron 0 3.93 6.55 6.22 6.67 8.46 5.23 18.79 4.95 7.87 9.43 3.84 15.84 24.04 9.24 4.88 4.79 7.78 1.71 3.95 6.86 0.14 6.33 2.18 37 I5_SR1 SilentIntronRegion 0 3.25 5.15 4.94 5.80 8.09 3.73 17.30 4.56 6.36 7.86 3.94 15.82 24.28 8.65 3.95 5.35 9.43 2.19 4.83 8.26 0.22 6.45 1.92 38 I5_AR1 ActiveIntronRegion 0 12.30 3.43 8.42 6.13 2.01 8.37 31.36 6.05 7.02 20.21 3.74 14.34 21.98 10.35 9.97 8.92 3.30 3.23 5.77 9.84 0.00 4.69 5.87 39 I5_AR2 ActiveIntronRegion 0 4.72 9.33 8.47 8.33 9.58 7.77 20.88 5.63 10.72 11.71 3.69 16.10 23.85 10.30 6.29 3.56 5.08 0.77 2.26 4.20 0.00 6.25 2.46 40 E6_Aa NovelBoundary 0 3.33 0.00 9.91 10.26 3.65 10.79 19.08 8.38 14.41 9.46 7.95 37.66 36.20 11.65 15.20 16.24 4.77 1.78 4.80 14.70 0.00 8.21 13.06 41 ER6a ExonRegion 0 5.45 10.52 7.35 8.19 6.86 8.43 27.15 5.44 5.45 9.13 7.29 18.83 24.15 15.97 6.34 6.17 11.84 2.55 7.02 6.48 1.85 8.38 3.24 42 E6_Ab KnownBoundary 0 16.74 18.88 12.12 25.80 0.00 15.05 30.07 9.94 13.17 13.75 20.48 6.30 6.82 24.37 10.51 3.93 9.35 7.63 9.51 23.52 2.53 5.69 4.35 43 ER6b ExonRegion 0 27.99 79.11 47.91 56.74 69.26 93.07 155.73 46.58 55.62 74.78 146.97 175.61 151.13 155.63 69.14 82.03 162.39 57.33 67.89 71.56 34.51 78.76 48.51 44 E6a_E7a KnownJunction 0 51.86 56.83 33.09 66.59 55.69 61.73 120.65 42.80 56.45 76.29 110.40 108.19 94.64 101.07 56.25 53.75 111.64 62.35 56.57 45.57 13.96 81.13 55.74 45 E7_Aa NovelBoundary 0 22.15 2.89 4.52 7.56 3.65 2.56 21.20 4.35 1.79 5.18 0.00 6.30 8.28 2.47 5.56 12.05 7.85 1.95 4.80 5.88 0.00 9.12 0.00 46 ER7a ExonRegion 0 27.42 58.94 33.31 57.86 46.87 73.19 102.41 26.82 52.55 64.68 115.36 181.77 171.33 111.94 48.53 63.14 147.04 49.11 45.99 49.48 10.15 80.37 56.06 47 E7a_E8a KnownJunction 0 35.41 54.79 37.28 43.98 74.87 74.50 129.35 28.55 49.74 56.14 125.72 229.42 158.92 122.37 63.91 78.18 91.63 30.14 45.08 45.70 8.09 72.19 34.49 48 E7a_E9a NovelJunction 0 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 3.59 0.00 0.00 6.30 20.45 2.35 0.00 11.88 4.49 0.00 0.00 3.26 0.00 0.00 0.00 49 I7_SR1 SilentIntronRegion 0 3.40 6.32 3.33 7.83 11.75 5.30 14.47 9.11 5.32 6.59 1.45 7.97 18.62 4.21 3.99 5.10 7.77 0.89 1.37 2.96 0.24 2.90 0.63 50 I7_SR2 SilentIntronRegion 0 3.61 10.32 4.13 7.40 4.04 6.31 9.35 7.77 6.27 8.74 5.75 6.86 14.32 5.90 6.96 9.91 15.87 9.23 7.24 7.13 2.21 2.62 2.96 51 I7_SR3 SilentIntronRegion 0 5.92 8.37 6.56 10.53 7.02 12.42 13.78 5.51 5.45 6.16 4.13 1.76 7.32 5.23 7.99 7.77 13.99 4.51 7.34 6.29 0.73 3.39 2.42 52 E8_Aa NovelBoundary 1 0.00 15.66 1.51 15.68 20.46 8.52 8.66 0.00 11.40 11.85 7.42 0.00 42.85 13.71 5.19 4.36 30.95 2.57 0.00 5.94 0.00 5.39 0.00 53 ER8a ExonRegion 0 35.91 71.15 44.32 52.66 51.69 84.27 130.57 41.56 49.56 55.63 115.79 165.13 182.41 94.35 57.04 64.79 158.25 35.19 34.78 60.12 14.54 92.29 40.46 54 E8a_E9a KnownJunction 0 46.60 43.87 61.26 65.49 47.54 95.74 150.95 44.24 44.56 62.53 134.88 184.71 142.04 67.16 29.54 66.56 156.71 30.72 30.87 51.90 14.39 87.75 41.23 55 ER9a ExonRegion 0 35.96 72.76 33.79 52.06 42.14 85.85 114.60 37.48 43.26 59.87 118.84 169.18 160.59 88.10 36.66 53.89 115.93 35.68 29.75 59.22 14.34 64.61 35.50 56 E9_Da NovelBoundary 1 3.41 12.70 8.19 10.19 0.00 2.50 19.34 3.33 4.37 12.57 4.63 21.01 52.92 0.00 15.20 3.67 35.53 6.30 4.80 31.51 0.00 9.06 0.00 57 E9a_E10a KnownJunction 0 76.75 85.45 45.21 52.54 84.89 89.21 123.26 44.52 46.56 68.12 134.56 320.95 234.72 158.10 62.43 58.45 114.63 48.87 29.08 80.02 19.71 52.60 45.50 58 I9_AR1 ActiveIntronRegion 0 17.08 21.42 10.41 13.06 13.52 7.59 19.17 13.72 9.77 11.88 4.28 13.17 16.61 8.51 11.18 13.30 17.23 13.56 12.27 13.26 4.03 3.23 4.52 59 ER10a ExonRegion 0 54.53 82.68 37.57 63.12 111.33 109.50 126.44 57.81 46.02 70.84 137.69 253.27 211.30 139.46 63.98 73.13 155.32 51.69 35.71 74.24 21.40 68.98 33.62 60 E10_Da KnownBoundary 0 58.23 102.94 43.23 86.80 168.68 145.94 177.40 71.63 52.23 79.78 143.93 193.26 173.37 139.56 83.19 64.60 185.32 50.45 38.40 72.80 22.98 93.32 36.62 61 ER10b ExonRegion 0 54.56 77.80 56.72 77.13 99.56 106.75 136.02 59.80 49.81 80.46 133.43 206.30 197.68 142.09 66.67 85.60 138.57 58.63 37.78 70.00 27.30 71.99 61.79 62 E10b_E11a KnownJunction 0 99.13 79.92 67.59 94.39 90.92 136.85 163.49 60.38 65.83 95.06 134.98 181.86 144.80 157.46 90.36 110.65 129.59 90.04 83.01 76.19 21.81 116.71 68.89 63 I10 Intron 0 14.81 18.21 10.54 9.36 11.25 2.75 12.27 8.38 3.97 9.58 1.16 6.43 9.30 0.65 5.96 4.23 8.28 2.52 3.03 5.08 0.72 0.94 0.87 64 I10_SR1 SilentIntronRegion 0 14.83 18.24 10.55 9.38 11.27 2.75 12.28 8.39 3.98 9.60 1.17 6.43 9.31 0.65 5.96 4.24 8.29 2.52 3.04 5.09 0.72 0.94 0.87 65 ER11a ExonRegion 0 82.24 128.00 77.16 80.08 114.03 108.98 172.59 59.06 67.38 88.05 141.93 192.97 208.64 170.23 98.44 90.44 174.90 96.03 78.86 96.84 46.12 74.32 64.19 66 E11a_E12a KnownJunction 0 86.02 116.69 69.69 82.57 98.13 76.94 106.26 58.82 56.83 98.05 140.98 182.76 183.75 204.55 82.45 97.41 139.04 88.67 56.94 78.75 67.52 76.36 43.19 67 ER12a ExonRegion 0 54.97 98.90 73.54 90.69 111.43 99.41 127.87 60.13 60.13 100.43 144.08 199.04 164.03 180.53 97.92 122.40 159.44 85.22 83.15 69.82 54.22 76.10 72.72 68 E12_Da NovelBoundary 0 10.37 5.99 21.52 9.06 8.32 0.00 19.08 19.59 10.01 10.34 2.37 12.60 13.64 4.89 4.45 3.25 22.35 0.00 4.80 15.60 0.00 3.12 0.00 69 E12a_E13b KnownJunction 0 47.12 102.15 87.61 117.47 161.97 143.84 158.46 58.16 65.16 90.74 146.46 143.45 202.10 163.52 114.10 83.74 186.82 96.71 81.51 63.21 55.54 56.03 64.71 70 ER13a ExonRegion 0 7.87 3.90 12.65 9.65 11.13 2.21 12.47 7.83 4.07 5.57 3.49 0.69 5.96 1.05 7.23 8.48 5.97 5.19 7.84 4.78 1.53 3.26 3.21 71 E13_Ab KnownBoundary 0 13.56 3.16 22.89 18.05 10.78 7.44 11.17 2.09 9.98 8.27 2.21 0.00 0.00 0.00 15.58 11.54 3.65 0.00 8.94 3.26 2.78 14.27 0.00 72 ER13b ExonRegion 0 69.33 94.32 94.04 114.09 116.33 125.65 126.41 77.70 60.63 109.11 139.92 139.02 176.77 165.04 116.71 121.32 175.93 106.16 99.43 98.11 58.44 106.69 84.29 73 E13_Da NovelBoundary 0 137.95 18.15 33.85 10.55 0.00 5.56 7.95 2.01 4.66 8.78 0.00 0.00 6.66 0.00 14.96 8.12 8.51 8.75 18.54 9.33 0.00 2.63 12.55 74 E13a_E14a KnownJunction 0 54.82 68.15 88.32 97.82 116.04 103.29 116.41 86.01 61.14 93.72 152.09 189.51 180.99 143.15 110.27 125.69 191.77 67.73 100.33 109.75 59.92 124.00 67.01 75 I13_AR1 ActiveIntronRegion 0 19.61 1.95 4.42 3.80 5.70 1.91 8.00 2.27 0.96 0.62 0.00 3.82 2.47 0.00 4.12 0.00 4.34 0.36 0.00 3.08 0.00 1.40 1.31 76 ER14a ExonRegion 0 65.92 72.12 81.79 95.37 126.55 122.82 129.87 86.78 57.88 90.24 106.90 142.53 172.89 127.86 93.17 103.25 134.77 62.49 70.87 78.41 28.90 95.63 66.37 77 E14a_E15a KnownJunction 0 162.18 100.18 86.45 108.14 169.52 172.29 153.42 96.40 68.29 94.47 85.81 123.49 200.80 131.73 105.94 87.07 184.29 80.42 110.31 89.10 31.44 109.73 46.69 78 E15_Aa NovelBoundary 0 17.04 2.89 14.75 25.57 12.99 11.36 29.15 5.09 11.02 4.41 2.16 0.00 0.00 0.00 0.00 0.00 12.62 2.11 0.00 2.36 0.00 3.12 0.00 79 ER15a ExonRegion 0 83.52 93.22 89.59 117.81 133.72 147.33 133.69 93.15 66.55 94.75 112.46 113.36 162.84 132.88 100.87 100.80 139.32 54.33 85.89 82.04 17.25 92.82 71.73 80 E15_Da KnownBoundary 0 142.10 106.43 100.20 131.32 190.32 167.01 182.70 98.78 72.13 91.73 112.98 143.00 95.45 164.46 87.77 128.43 158.02 29.64 59.48 84.37 8.15 111.02 54.89 81 ER15b ExonRegion 0 67.61 88.21 76.84 98.06 104.22 84.38 118.28 74.05 54.75 89.57 62.67 103.91 95.41 68.25 80.01 38.96 50.91 18.66 40.64 39.88 11.30 82.54 28.73