Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MTHFD2 Gene 0 84.94 389.63 361.44 700.52 117.63 190.18 179.23 82.92 54.31 125.34 407.90 459.37 515.07 284.31 215.66 239.35 232.69 170.45 260.07 224.93 54.63 132.90 58.27 2 394053 Transcript 0 10.06 25.37 22.69 32.32 13.89 13.55 17.69 8.57 7.12 7.54 19.87 22.38 31.60 17.94 17.79 21.95 14.57 19.03 16.96 22.95 4.85 7.51 7.88 3 394050 Transcript 0 0.13 2.83 4.01 5.02 0.08 1.50 1.48 0.37 0.74 1.42 7.01 1.44 2.84 3.05 1.85 3.57 6.90 2.07 3.19 6.88 2.29 0.25 1.04 4 409804 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 470592 Transcript 0 0.00 0.00 15.52 33.63 0.00 7.21 1.77 5.22 2.46 7.36 7.26 0.00 27.76 9.54 4.45 0.00 0.00 1.62 8.19 0.00 2.35 0.00 0.00 6 477455 Transcript 0 1.26 5.01 4.18 15.93 0.00 14.11 0.90 0.65 1.04 1.52 5.13 1.64 14.73 2.69 4.93 0.07 2.51 2.01 3.54 1.51 0.78 0.00 0.33 7 489041 Transcript 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 264090 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 409601 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 488086 Transcript 0 1.55 2.32 17.38 7.68 11.62 5.30 24.61 4.81 9.81 8.11 9.75 0.00 10.24 5.03 5.08 15.95 18.92 15.70 9.83 13.96 1.16 1.57 4.89 11 462026 Transcript 0 1.03 2.99 4.43 4.90 2.14 1.48 2.68 0.82 3.20 1.23 4.23 7.33 10.35 4.01 2.29 5.28 7.16 6.38 4.07 6.14 3.37 2.02 2.34 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 3.47 12.98 4.69 0.67 1.59 1.05 5.04 0.00 0.66 1.34 7.16 0.00 0.00 7.22 6.54 7.21 6.88 1.61 13.76 4.16 2.44 0.00 1.94 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.90 0.00 0.00 0.00 0.00 0.00 3.93 4.48 4.80 0.00 0.00 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ae KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1_Af KnownBoundary 0 0.00 6.71 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.11 0.00 0.00 0.00 0.00 0.00 18 E1_Ag KnownBoundary 0 9.33 66.37 14.49 16.98 13.92 56.39 57.15 0.00 2.89 9.86 60.80 23.26 24.51 13.89 30.41 45.97 41.23 31.79 26.35 45.32 10.26 2.33 7.51 19 ER1c ExonRegion 0 8.47 36.60 9.80 2.73 3.57 1.83 11.92 0.00 1.24 2.29 17.40 0.00 0.00 21.11 17.41 14.86 13.20 5.54 22.30 14.89 6.61 0.00 5.87 20 ER1d ExonRegion 0 8.47 37.62 9.80 2.73 5.35 1.83 11.92 0.00 1.24 2.29 18.36 0.00 0.00 21.11 18.86 14.86 13.20 5.54 19.11 14.89 7.71 0.00 5.87 21 ER1e ExonRegion 0 8.47 38.64 9.80 2.73 5.35 1.83 13.24 0.00 1.24 2.29 19.33 0.00 0.00 21.11 20.31 14.86 13.20 5.54 19.11 14.89 8.81 0.00 5.87 22 ER1f ExonRegion 1 59.10 217.75 54.76 46.34 38.49 151.64 103.98 5.32 9.03 26.29 188.83 11.66 5.05 53.10 110.25 136.26 139.65 37.95 182.06 106.55 41.87 43.27 36.37 23 ER1g ExonRegion 1 99.63 389.84 139.92 168.07 60.00 287.81 175.59 22.03 28.19 68.98 342.53 27.62 58.94 101.87 168.40 241.72 243.97 113.76 327.05 196.08 87.95 84.93 69.62 24 E1_Da KnownBoundary 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 25 E1a_E2b KnownJunction 0 3.41 65.45 72.00 87.57 0.00 27.31 26.67 4.03 2.86 31.89 122.93 74.57 126.78 73.58 32.26 47.77 99.39 23.67 30.87 76.64 42.94 3.12 4.35 26 E1a_E4a KnownJunction 0 0.00 0.00 15.52 33.63 0.00 7.21 1.77 5.22 2.46 7.36 7.26 0.00 27.76 9.54 4.45 0.00 0.00 1.62 8.19 0.00 2.35 0.00 0.00 27 E1a_E5a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER1h ExonRegion 0 0.00 0.00 0.99 1.05 0.00 0.00 0.00 0.00 1.42 0.00 5.21 0.00 0.00 0.00 0.00 1.53 5.10 0.00 4.92 7.67 1.85 0.00 1.51 29 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER2a ExonRegion 0 0.38 8.50 11.03 14.00 0.24 4.50 4.45 1.10 0.79 4.27 15.81 4.33 8.53 9.15 5.54 9.19 15.60 6.22 4.63 12.96 5.01 0.76 1.60 31 ER2b ExonRegion 1 26.65 317.23 363.38 691.18 72.23 177.09 108.06 84.23 56.65 149.81 648.35 199.70 459.50 396.88 266.44 378.48 454.61 329.61 408.45 441.24 137.00 134.81 77.17 32 E2_Da KnownBoundary 0 0.00 3.35 12.77 7.03 4.16 2.38 13.16 6.45 6.86 12.28 10.06 0.00 0.00 0.00 0.00 12.90 16.27 16.83 4.80 23.59 2.41 0.00 11.95 33 E2a_E2c KnownJunction 0 3.78 5.99 0.00 14.28 0.00 16.18 1.99 1.85 0.00 1.48 9.32 0.00 6.66 4.94 0.00 0.00 0.00 0.00 7.44 2.56 0.00 0.00 0.00 34 E2a_E4a KnownJunction 1 49.56 591.93 610.30 1278.19 260.19 568.65 277.25 119.48 65.42 209.23 888.17 457.35 1371.66 735.07 448.48 511.32 566.62 430.04 580.91 575.70 162.60 232.69 70.17 35 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E2a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER2c ExonRegion 0 1.55 2.32 17.38 7.68 11.62 5.30 24.61 4.81 9.81 8.11 9.75 0.00 10.24 5.03 5.08 15.95 18.92 15.70 9.83 13.96 1.16 1.57 4.89 38 E2_Ac KnownBoundary 0 10.22 3.35 21.35 8.26 11.71 8.35 35.99 0.00 7.52 8.81 5.37 0.00 14.12 12.36 0.00 13.07 4.21 9.74 15.25 8.37 2.59 5.57 0.00 39 ER2d ExonRegion 0 6.12 10.75 13.26 21.84 3.68 12.25 11.01 4.03 10.57 8.53 10.15 15.56 25.10 8.05 14.19 4.57 10.16 12.79 11.45 12.23 2.32 5.47 8.07 40 E2c_E4a KnownJunction 0 0.00 3.22 4.61 18.15 0.00 13.06 0.00 0.00 0.00 1.10 2.21 0.00 13.47 0.00 9.77 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 41 ER2e ExonRegion 0 0.00 5.83 7.92 15.36 0.00 13.08 0.71 0.12 3.13 1.99 3.87 4.91 24.08 3.14 5.03 0.20 3.52 6.04 3.19 1.99 2.35 0.00 0.98 42 ER3a ExonRegion 0 2.03 3.90 6.54 9.24 6.41 3.51 5.39 2.46 9.60 3.68 7.87 6.83 7.60 5.54 6.86 11.39 18.18 14.51 12.20 16.29 7.91 3.99 7.03 43 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E4_Aa NovelBoundary 0 22.00 9.01 14.49 26.17 22.67 9.71 17.97 15.20 18.63 9.03 5.37 40.06 34.41 2.24 4.45 46.65 4.77 11.57 19.20 14.19 2.97 16.17 11.27 45 ER4a ExonRegion 0 87.78 707.95 744.03 1781.48 153.34 405.09 321.96 173.00 123.28 303.85 1471.03 1162.90 2456.13 901.20 447.48 678.03 831.91 545.18 779.90 691.88 171.57 314.88 123.27 46 E4a_E5a KnownJunction 0 178.77 717.64 784.04 1810.73 156.62 346.90 257.25 149.30 113.16 314.55 1290.54 1776.28 2505.84 1026.55 445.39 753.99 799.44 622.46 728.77 773.91 172.11 269.43 107.05 47 E5_Aa NovelBoundary 0 16.89 8.68 10.64 29.73 43.97 92.22 26.01 34.46 35.76 14.99 7.84 0.00 6.82 2.47 4.45 11.62 13.18 11.15 27.86 20.13 0.00 0.00 0.00 48 ER5a ExonRegion 0 173.00 785.59 763.42 1690.65 204.04 444.64 329.19 165.78 127.06 313.45 1416.26 1661.10 2618.82 977.26 511.19 740.10 855.71 710.60 831.59 659.52 188.08 328.32 151.82 49 E5_Da NovelBoundary 0 13.48 35.72 14.43 48.51 53.23 54.17 39.22 37.46 30.82 14.53 24.64 29.86 36.36 7.12 4.45 11.45 18.14 10.45 0.00 33.94 2.41 5.76 8.71 50 E5a_E6a KnownJunction 0 169.88 1012.78 768.54 1577.52 201.10 388.98 267.76 126.55 111.75 307.17 1314.54 1650.84 2713.78 1176.83 475.56 664.95 847.78 608.87 924.83 650.87 230.49 343.40 137.43 51 I5 Intron 0 12.24 11.04 13.58 16.31 20.85 19.70 19.54 17.64 11.30 7.67 13.23 12.90 16.23 8.68 17.51 16.85 14.42 10.42 9.40 14.82 4.94 7.63 7.63 52 I5_SR1 SilentIntronRegion 0 12.50 11.24 13.89 16.64 21.16 20.17 19.91 17.98 11.54 7.82 13.47 13.13 16.62 8.88 17.93 17.18 14.67 10.67 9.62 15.12 5.06 7.78 7.81 53 E6_Aa NovelBoundary 0 10.59 11.51 16.82 38.56 24.28 17.09 23.05 26.25 20.11 10.85 27.64 19.36 29.71 14.30 29.17 24.35 20.94 29.72 14.49 16.62 2.78 12.06 0.00 54 ER6a ExonRegion 0 109.82 827.99 690.69 1533.54 193.40 355.55 324.51 135.49 116.87 276.29 1125.32 1829.36 1970.29 919.93 463.80 702.55 715.47 622.55 734.99 572.77 244.53 294.72 154.53 55 E6a_E7a KnownJunction 0 181.51 963.38 806.39 2049.16 251.53 541.96 415.88 163.97 111.89 291.53 1196.41 1748.82 1428.48 854.91 584.09 878.91 676.95 888.84 934.43 678.35 210.91 307.51 213.92 56 ER6b ExonRegion 0 1.06 5.08 6.74 5.45 0.00 0.92 2.65 0.00 0.00 0.00 4.83 15.15 23.45 6.50 0.00 4.46 3.30 4.62 0.00 2.13 2.20 2.08 0.00 57 I6 Intron 0 6.49 6.60 6.37 13.68 19.64 15.55 12.18 15.34 15.39 7.50 0.46 3.74 6.37 0.76 3.81 5.00 3.37 3.60 3.83 9.72 0.53 1.25 3.71 58 I6_SR1 SilentIntronRegion 0 6.52 6.64 6.40 13.74 19.73 15.62 12.24 15.41 15.46 7.54 0.47 3.75 6.40 0.76 3.83 5.03 3.39 3.61 3.85 9.77 0.53 1.26 3.73 59 E7_Aa NovelBoundary 0 7.19 3.09 1.66 22.41 15.03 13.23 22.17 15.81 18.81 7.36 2.68 13.65 0.00 0.00 10.75 3.33 0.00 8.46 16.00 14.83 0.00 2.88 3.67 60 ER7a ExonRegion 0 146.06 1049.61 783.18 1773.95 248.61 477.00 419.15 149.32 106.18 317.14 1219.41 1281.52 1515.08 960.17 427.48 823.73 801.34 698.37 799.90 619.49 190.32 307.78 168.53 61 E7_Da NovelBoundary 0 0.00 5.59 4.35 11.42 55.52 8.69 12.59 15.65 17.91 11.71 2.21 0.00 6.82 2.77 4.45 0.00 0.00 1.78 21.37 11.82 5.56 0.00 0.00 62 E7a_E8a KnownJunction 0 189.52 1417.97 816.62 1877.62 223.01 429.24 532.34 143.59 100.92 352.05 1095.75 941.71 1428.48 474.60 334.76 659.74 705.38 517.84 631.92 434.25 165.07 245.49 132.57 63 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 I7_AR1 ActiveIntronRegion 0 9.72 5.89 4.94 14.02 24.71 19.39 18.94 16.63 11.34 9.08 0.00 0.95 11.05 0.96 0.79 0.00 0.00 2.84 0.00 7.33 0.00 1.61 3.05 65 E8_Aa NovelBoundary 0 14.74 0.00 4.49 36.96 12.39 27.71 4.06 21.11 24.28 11.47 0.00 6.30 13.47 0.00 4.45 8.46 0.00 0.00 4.14 6.26 0.00 0.00 0.00 66 ER8a ExonRegion 0 166.94 1080.10 826.80 1844.26 219.64 520.23 461.13 158.55 118.35 294.98 1092.72 1244.48 1501.37 847.79 470.92 670.19 735.89 540.95 667.33 560.23 163.93 285.91 142.85 67 E8_Da NovelBoundary 0 9.48 23.09 30.48 49.14 19.35 4.83 40.89 27.15 18.06 10.26 4.58 18.16 13.64 4.71 14.71 7.18 4.68 8.29 0.00 7.99 0.00 0.00 0.00 68 E8a_E9a KnownJunction 0 322.43 1170.45 952.78 2169.35 273.09 465.41 443.44 147.05 105.15 250.35 970.72 1289.07 1703.14 816.06 520.92 702.21 636.65 581.88 732.54 471.71 115.96 255.89 118.14 69 I8 Intron 0 9.04 36.40 22.12 34.49 23.44 25.19 20.98 20.34 13.43 15.90 12.33 23.11 48.64 15.55 25.86 15.92 8.03 9.75 12.40 20.59 0.95 6.20 3.49 70 I8_AR1 ActiveIntronRegion 0 9.99 65.94 26.73 41.24 24.42 26.56 22.51 28.79 18.24 23.67 23.43 35.28 67.27 23.11 26.46 29.01 16.11 18.96 17.04 25.12 1.73 10.49 6.47 71 I8_SR2 SilentIntronRegion 0 9.60 23.18 22.93 35.50 24.04 26.54 21.74 18.16 12.26 13.54 7.27 19.29 42.82 12.79 27.89 9.76 3.19 5.24 11.08 20.12 0.43 4.23 1.70 72 E9_Aa NovelBoundary 0 7.48 18.81 15.85 39.09 51.87 32.94 66.73 30.89 14.41 9.48 5.21 12.60 13.80 0.00 9.27 0.00 4.77 12.27 4.80 21.16 0.00 6.00 0.00 73 ER9a ExonRegion 0 249.77 1314.22 890.15 1774.54 309.06 527.35 507.28 165.25 118.89 295.92 1097.15 937.24 848.79 817.66 573.21 685.16 612.38 435.38 749.70 539.19 140.95 315.42 173.11 74 E9_Da KnownBoundary 0 291.76 1142.10 983.85 1751.23 534.13 674.10 629.05 241.89 121.79 337.92 895.75 955.21 576.10 564.07 661.72 436.38 419.73 243.62 403.02 539.01 44.42 322.27 139.57 75 ER9b ExonRegion 0 305.35 1012.90 977.41 1944.69 456.94 694.90 665.49 262.50 139.76 354.06 796.41 1175.96 992.08 554.42 645.17 443.37 353.34 159.76 504.11 421.02 39.70 448.20 117.10 76 E9_Db KnownBoundary 0 224.78 1227.94 1303.50 2957.73 347.03 634.92 539.45 370.73 155.50 471.24 709.02 1383.90 1041.33 563.01 751.35 457.49 306.03 108.57 492.53 379.48 14.89 631.99 97.91 77 ER9c ExonRegion 0 189.35 660.98 1013.51 1763.04 280.36 326.97 343.62 252.87 122.52 307.92 590.62 1143.44 919.04 340.35 460.21 245.71 228.81 101.51 327.94 344.90 32.59 332.00 60.77 78 E9_Dc KnownBoundary 1 80.16 168.59 194.08 192.58 138.03 128.96 125.11 52.78 34.61 49.53 136.03 291.24 247.55 96.06 69.84 125.35 24.50 28.73 54.59 118.95 3.09 53.89 19.63 79 E9_Dd KnownBoundary 0 0.00 6.51 21.91 21.91 12.65 11.07 21.90 7.60 5.35 0.00 20.85 0.00 7.79 0.00 0.00 25.29 4.77 2.57 4.52 15.85 0.00 6.12 0.00 80 E9_De KnownBoundary 0 14.15 28.28 36.69 61.00 32.17 28.17 58.78 16.18 24.83 9.03 39.64 32.56 19.80 14.77 0.00 32.64 9.16 7.46 13.55 26.14 0.00 0.00 11.87 81 ER9d ExonRegion 1 32.69 80.78 165.36 196.33 109.71 93.22 106.73 53.29 44.05 36.51 116.08 259.53 201.67 72.54 49.48 90.65 28.06 33.88 37.87 81.56 5.14 30.91 18.93 82 ER9e ExonRegion 0 10.58 52.20 118.45 151.28 82.06 67.85 78.56 48.97 41.99 25.61 88.27 181.84 178.22 48.72 17.41 60.43 25.31 29.56 15.93 65.25 4.41 20.84 14.68 83 ER9f ExonRegion 0 20.12 50.75 45.37 64.63 27.78 27.10 35.38 17.15 14.24 15.07 39.75 44.76 63.20 35.88 35.57 43.90 29.15 38.06 32.34 45.91 9.69 15.01 15.76