Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC010883.2 Gene 0 11.39 7.30 34.40 11.19 26.06 7.28 6.11 18.81 5.42 12.26 4.71 3.39 4.56 7.92 12.75 6.47 8.04 8.95 6.93 7.63 3.11 1.33 0.75 2 423354 Transcript 0 5.87 3.43 17.94 5.89 16.72 3.26 3.26 10.04 2.97 6.38 2.95 1.43 1.68 4.22 7.68 2.62 3.96 6.02 2.56 3.66 1.92 0.49 0.28 3 IG45 Intergenic 0 14.77 20.63 33.82 17.01 55.78 14.17 24.40 20.86 7.53 20.68 9.35 20.41 17.41 10.69 7.77 8.57 8.91 17.19 6.53 13.46 2.05 2.52 1.37 4 IG45_AR1 ActiveIntergenicRegion 0 16.09 22.38 39.61 19.68 59.78 16.36 26.07 24.48 8.23 24.64 9.87 20.02 15.84 11.73 9.02 10.30 10.29 20.65 7.84 14.99 2.44 2.33 1.64 5 IG45_AR2 ActiveIntergenicRegion 0 8.93 4.95 5.54 4.15 18.50 0.00 6.97 3.46 4.56 0.85 3.11 21.65 22.84 1.55 1.01 0.00 0.00 0.00 0.00 1.85 0.00 2.72 0.00 6 IG45_SR2 SilentIntergenicRegion 0 9.49 15.92 5.81 3.71 49.13 3.22 21.69 3.16 4.64 1.15 8.96 25.90 29.03 7.87 1.40 0.00 2.90 0.00 0.00 8.58 0.00 4.38 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1_Da NovelBoundary 0 14.30 24.80 27.65 17.88 43.72 0.00 28.44 23.41 5.21 26.54 4.00 32.26 8.28 5.00 6.30 10.42 4.77 6.34 11.58 14.76 2.78 2.88 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 17.97 26.66 38.18 20.88 61.81 12.18 25.69 26.78 10.00 28.82 8.60 15.47 13.75 14.73 6.86 8.24 11.06 12.16 13.06 17.33 3.44 2.05 4.24 11 I1_SR1 SilentIntronRegion 0 9.15 24.02 17.36 12.29 36.21 4.23 11.83 17.81 7.96 17.24 6.68 29.87 22.97 12.25 7.77 2.57 8.56 4.50 7.34 13.49 3.17 2.40 3.38 12 I1_AR2 ActiveIntronRegion 0 17.11 23.20 36.99 23.27 65.43 14.00 29.79 29.09 11.40 31.13 14.00 14.49 13.16 15.50 7.10 9.02 10.73 15.33 13.57 19.54 3.20 1.00 3.60 13 I1_SR2 SilentIntronRegion 0 23.53 31.82 50.40 22.92 71.58 14.44 28.68 29.13 9.62 32.53 3.95 9.18 9.69 15.28 6.17 10.40 12.76 12.83 15.56 17.08 3.83 2.98 5.39 14 Ix Intron 0 41.60 19.34 76.47 38.44 86.60 25.09 25.70 33.37 14.56 41.80 16.23 9.75 5.11 16.44 16.75 19.32 19.22 26.40 17.00 14.56 9.30 8.39 6.84 15 Ix_AR1 ActiveIntronRegion 0 45.33 24.43 47.83 28.25 73.03 15.77 20.27 25.18 16.11 30.74 12.03 7.36 4.48 16.79 14.49 11.96 24.15 25.87 16.47 12.66 6.09 7.15 5.24 16 Ix_SR1 SilentIntronRegion 0 55.97 19.23 77.56 43.28 109.69 23.70 26.80 37.90 13.73 37.50 15.08 10.21 5.16 18.26 14.84 16.71 21.05 21.86 12.35 17.83 8.09 8.85 5.58 17 Ix_AR2 ActiveIntronRegion 0 63.13 23.21 74.20 36.37 108.60 42.62 37.30 33.79 11.41 49.12 30.26 0.90 0.81 23.75 23.71 20.80 22.08 21.22 8.57 13.28 5.85 11.35 6.18 18 Ix_AR3 ActiveIntronRegion 0 49.22 25.10 106.43 51.00 110.66 36.83 32.42 44.22 21.46 64.56 19.56 16.75 7.29 20.71 20.27 27.89 22.80 31.14 25.56 16.10 14.58 10.49 7.83 19 Ix_SR2 SilentIntronRegion 0 33.66 12.29 65.67 32.96 100.73 35.36 32.77 20.52 14.20 31.11 10.96 10.94 6.35 12.88 15.88 21.24 7.91 25.79 15.19 8.75 7.69 5.73 4.35 20 Ix_AR4 ActiveIntronRegion 0 20.67 10.15 64.59 29.97 41.81 10.35 15.52 29.07 4.79 26.71 16.77 2.32 2.51 10.06 14.56 14.19 14.33 24.12 10.37 15.24 6.69 7.23 8.92 21 E2_Aa NovelBoundary 0 176.70 99.06 240.47 167.08 385.74 60.53 44.12 319.43 50.43 374.72 75.81 12.15 46.26 117.25 213.36 70.41 108.27 78.55 60.24 56.44 98.10 50.95 38.41 22 ER2a ExonRegion 0 2.64 2.43 15.71 5.73 7.97 1.90 2.24 7.14 2.34 5.14 2.94 2.48 0.00 4.43 11.12 3.30 0.65 4.81 0.02 2.76 1.96 0.00 0.00 23 E2_Da NovelBoundary 0 29.04 18.94 33.23 20.51 23.77 10.68 7.99 19.55 4.80 16.55 2.00 0.00 6.82 9.83 4.45 7.78 14.31 15.42 12.99 26.72 7.85 2.57 0.00 24 E2a_E3a KnownJunction 0 7.41 2.83 20.67 6.76 32.68 2.21 4.24 12.82 3.99 7.44 5.00 0.00 0.00 2.47 10.88 0.00 4.77 11.90 0.00 3.26 3.15 0.00 0.00 25 Ix Intron 0 21.04 8.61 53.79 19.07 31.04 9.79 7.07 19.46 7.46 21.08 3.56 0.80 1.73 5.61 9.40 7.11 6.69 13.53 5.28 18.41 4.06 4.99 3.77 26 Ix_AR1 ActiveIntronRegion 0 21.20 8.67 54.17 19.21 31.26 9.86 7.12 19.60 7.51 21.23 3.58 0.80 1.74 5.65 9.46 7.17 6.73 13.63 5.32 18.55 4.09 5.02 3.80 27 E3_Aa NovelBoundary 0 17.19 19.54 70.90 42.09 35.74 8.69 4.20 34.21 2.63 36.08 2.68 6.30 0.00 5.36 23.73 0.00 9.44 8.33 0.00 18.15 3.03 6.00 0.00 28 ER3a ExonRegion 0 19.30 11.89 53.34 16.96 42.92 12.21 9.82 30.06 8.50 19.31 6.79 4.67 8.40 11.14 16.39 9.82 14.40 13.41 12.76 12.30 4.47 2.46 1.39