Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC012354.4 Gene 0 6.84 10.41 4.27 10.82 6.57 1.22 0.10 4.07 0.53 27.77 0.00 0.42 0.37 0.13 2.06 1.47 0.19 23.88 21.94 16.68 0.08 0.00 0.00 2 425325 Transcript 0 1.94 2.16 1.54 2.41 1.94 0.48 0.15 1.13 0.09 7.62 0.00 0.07 0.06 0.02 0.98 0.35 0.03 9.00 5.80 5.47 0.17 0.00 0.00 3 IG11 Intergenic 0 8.07 13.89 13.32 15.52 5.41 2.35 0.74 7.37 0.84 32.01 0.03 2.58 0.75 0.22 1.55 2.11 0.00 63.41 33.59 35.55 0.09 0.03 0.00 4 IG11_SR1 SilentIntergenicRegion 0 16.94 39.48 30.58 36.67 12.36 7.61 2.53 13.56 1.74 48.48 0.00 3.71 1.23 0.00 1.49 3.01 0.00 95.90 30.38 41.97 0.00 0.00 0.00 5 IG11_AR1 ActiveIntergenicRegion 0 20.23 46.11 38.56 49.89 13.66 7.11 1.63 18.44 2.19 60.06 0.00 4.23 0.74 0.52 2.45 3.46 0.00 135.59 54.15 68.91 0.49 0.00 0.00 6 IG11_SR2 SilentIntergenicRegion 0 4.66 4.52 6.44 6.55 2.95 0.71 0.29 4.58 0.47 24.83 0.03 2.13 0.67 0.21 1.41 1.75 0.00 46.55 30.87 29.19 0.04 0.04 0.00 7 ER1a ExonRegion 0 1.00 0.00 0.86 0.96 0.00 0.00 0.63 0.00 0.00 11.25 0.00 0.00 0.00 0.00 2.34 0.00 0.00 15.62 7.52 8.04 0.00 0.00 0.00 8 E1_Da NovelBoundary 0 0.00 0.00 4.32 3.60 0.00 0.00 0.00 1.68 0.00 23.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.01 26.73 17.13 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 1.05 1.07 1.33 1.83 1.17 0.43 0.04 2.03 0.59 9.76 0.00 0.21 0.34 0.08 0.56 0.26 0.00 24.68 12.72 12.47 0.00 0.00 0.00 11 I1_SR1 SilentIntronRegion 0 1.05 1.07 1.33 1.84 1.17 0.43 0.04 2.03 0.59 9.77 0.00 0.21 0.34 0.08 0.56 0.26 0.00 24.69 12.72 12.48 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 2.74 6.58 11.65 1.73 3.65 0.00 0.00 2.55 0.00 12.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 3.58 18.15 0.00 0.00 0.00 13 ER2a ExonRegion 0 0.75 0.86 0.00 0.06 0.00 0.16 0.00 0.08 0.00 0.71 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.86 0.35 0.43 0.00 0.00 0.00 14 E2_Da NovelBoundary 0 0.00 5.99 6.39 7.79 0.00 0.00 0.00 1.97 0.00 19.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 9.32 22.31 0.00 0.00 0.00 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I2 Intron 0 2.47 2.47 3.62 3.50 2.81 0.51 0.03 1.98 0.17 11.52 0.00 0.17 0.26 0.06 0.42 0.90 0.00 18.85 16.79 12.75 0.00 0.05 0.00 17 I2_SR1 SilentIntronRegion 0 2.47 2.47 3.62 3.51 2.81 0.51 0.03 1.98 0.17 11.53 0.00 0.17 0.26 0.06 0.42 0.90 0.00 18.88 16.81 12.77 0.00 0.05 0.00 18 E3_Aa NovelBoundary 0 9.85 2.96 6.48 8.06 0.00 0.00 0.00 4.11 0.00 24.15 0.00 0.00 0.00 0.00 0.00 4.10 0.00 45.23 7.72 24.29 0.00 0.00 0.00 19 ER3a ExonRegion 0 4.44 2.58 5.48 3.81 6.57 1.96 0.36 3.47 0.00 11.03 0.00 0.00 0.00 0.00 0.00 0.81 0.00 21.65 8.62 12.08 1.20 0.00 0.00 20 E3_Da NovelBoundary 0 6.00 0.00 5.35 10.65 3.90 0.00 0.00 3.66 0.00 23.29 0.00 0.00 0.00 4.59 0.00 0.00 0.00 45.97 25.60 11.51 0.00 0.00 0.00 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I3 Intron 0 3.71 4.04 4.09 4.68 2.82 0.84 0.10 1.70 0.10 13.27 0.00 0.09 0.06 0.10 0.82 0.94 0.04 18.76 14.76 12.30 0.00 0.00 0.00 23 I3_SR1 SilentIntronRegion 0 3.71 4.04 4.09 4.68 2.82 0.85 0.10 1.70 0.10 13.28 0.00 0.09 0.06 0.10 0.82 0.94 0.04 18.77 14.77 12.30 0.00 0.00 0.00 24 E4_Aa NovelBoundary 0 0.00 3.35 2.90 5.09 0.00 0.00 0.00 0.00 0.00 16.65 0.00 0.00 0.00 0.00 4.45 0.00 0.00 13.22 25.04 17.51 0.00 0.00 0.00 25 ER4a ExonRegion 0 7.42 11.70 4.42 12.04 7.00 1.24 0.06 4.38 0.60 30.39 0.00 0.48 0.42 0.15 2.20 1.62 0.22 24.88 24.08 17.75 0.00 0.00 0.00