Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP1CB Gene 0 186.18 315.32 221.36 281.85 487.33 420.10 430.47 272.57 216.87 254.20 232.20 427.87 314.05 212.52 174.76 148.69 171.01 107.66 114.59 210.62 95.29 349.73 163.20 2 455580 Transcript 0 3.15 0.00 1.09 0.00 1.16 0.00 0.00 0.00 0.00 0.84 1.78 0.00 0.00 0.00 2.43 0.00 0.00 0.65 0.00 0.00 0.60 0.00 0.00 3 420282 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 4.42 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 441461 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 427786 Transcript 0 0.89 3.56 2.72 4.74 7.94 2.75 8.46 2.38 2.67 3.62 8.02 8.24 2.37 3.53 0.75 4.91 6.49 6.86 3.58 5.15 4.70 3.20 2.51 6 358506 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 395367 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 296122 Transcript 0 0.00 0.00 0.00 0.00 3.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 9 395366 Transcript 0 11.85 30.50 9.44 20.72 48.16 18.15 15.62 19.19 7.04 8.14 5.22 9.52 3.28 0.00 3.19 2.08 1.98 1.85 0.00 3.62 1.76 5.21 1.17 10 464273 Transcript 0 8.19 6.09 17.92 18.75 17.66 9.62 27.52 10.00 6.89 8.88 4.46 5.88 12.54 3.23 2.25 3.26 5.28 1.18 3.36 4.77 6.05 8.67 5.48 11 418910 Transcript 0 1.12 2.29 7.12 8.31 10.28 1.95 8.81 3.51 2.47 5.48 1.75 2.30 2.64 4.47 0.00 3.16 2.68 2.43 8.96 1.99 2.20 14.26 0.00 12 ER1a ExonRegion 0 3.15 0.00 1.09 0.00 1.16 0.00 0.00 0.00 0.00 0.84 1.78 0.00 0.00 0.00 2.43 0.00 0.00 0.65 0.00 0.00 0.60 0.00 0.00 13 E1_Ab KnownBoundary 0 7.56 0.00 1.83 1.23 3.90 5.11 5.34 0.00 1.59 1.53 6.37 0.00 0.00 0.00 6.30 0.00 0.00 7.79 0.00 0.00 5.62 0.00 3.76 14 ER1b ExonRegion 0 1.58 0.00 0.84 0.00 1.49 0.61 2.23 0.08 0.00 1.77 5.22 0.00 0.00 5.03 2.26 2.41 0.00 1.44 1.26 0.00 2.48 1.06 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 6.32 0.00 0.00 1.67 0.00 0.00 0.00 2.18 4.45 0.00 0.00 0.00 0.00 0.00 3.15 3.12 0.00 16 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.68 1.81 2.14 0.00 1.61 2.42 0.00 0.00 4.41 8.90 3.93 0.00 2.57 4.80 0.00 0.00 0.00 0.00 19 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 4.98 4.92 1.73 0.00 2.29 1.10 0.00 0.00 2.78 4.97 0.85 0.00 3.17 6.37 0.00 2.20 2.08 0.00 20 ER1d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 5.50 5.30 1.73 0.00 2.29 1.93 0.00 0.00 1.62 2.90 2.97 0.00 3.70 6.37 0.00 4.41 2.08 0.00 21 ER1e ExonRegion 0 0.35 0.00 0.00 0.00 0.00 6.72 4.41 1.73 0.00 2.29 4.99 0.00 0.00 8.26 5.08 2.97 1.10 6.31 6.37 1.60 9.18 1.74 0.98 22 E1_Da KnownBoundary 0 3.70 0.00 0.00 2.53 0.00 16.35 12.28 0.00 0.00 0.00 18.06 0.00 0.00 33.90 4.45 0.00 9.07 21.10 0.00 14.00 18.10 0.00 8.62 23 E1a_E1j KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 4.42 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER1f ExonRegion 0 2.12 0.53 0.00 0.00 0.00 11.56 5.24 1.73 0.21 1.94 13.45 0.00 0.00 25.99 9.59 4.26 3.30 9.24 4.02 2.78 13.13 0.00 2.94 25 E1_Ag KnownBoundary 0 0.00 2.83 0.00 0.00 0.00 6.47 1.81 1.56 1.16 0.00 6.11 0.00 0.00 2.53 4.45 7.18 3.65 0.00 3.67 2.56 4.94 0.00 0.00 26 ER1g ExonRegion 0 2.66 6.30 0.00 0.22 1.04 17.75 6.71 2.12 1.83 3.37 21.14 1.54 2.27 20.07 13.66 7.29 16.82 8.76 3.60 11.12 11.87 0.47 5.68 27 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 6.30 0.00 0.00 4.45 3.42 8.42 0.00 0.00 0.00 0.00 0.00 4.35 28 E1b_E1j KnownJunction 0 6.45 18.02 2.66 1.27 4.07 41.40 16.47 2.55 7.70 9.37 23.85 0.00 12.66 21.54 5.93 15.47 51.61 7.25 12.33 23.91 14.21 2.69 12.12 29 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 0.00 4.47 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER1h ExonRegion 1 4.23 20.34 0.00 1.82 8.47 26.59 9.49 3.74 3.71 8.03 34.47 10.82 4.69 14.08 7.74 9.91 39.61 9.24 11.15 17.38 9.18 2.78 13.21 31 ER1i ExonRegion 0 0.00 6.10 0.00 0.00 3.41 14.73 0.16 0.47 0.34 2.29 22.61 3.54 0.00 12.11 2.29 13.87 19.21 4.26 5.98 1.42 2.54 0.06 15.93 32 E1_Ah KnownBoundary 0 3.04 20.65 0.00 1.63 6.88 36.06 0.00 1.60 1.50 5.56 39.75 0.00 0.00 20.25 4.82 45.37 29.83 14.26 16.28 10.93 5.13 0.00 34.83 33 ER1j ExonRegion 0 5.96 6.93 0.00 0.98 10.25 35.10 15.98 4.94 5.38 9.27 40.94 7.74 9.64 39.57 7.52 59.36 55.65 18.37 36.34 11.39 41.19 12.94 43.14 34 E1_Dc KnownBoundary 0 0.00 11.97 0.00 3.76 4.33 46.79 13.91 7.31 6.48 7.95 11.74 12.60 12.82 14.19 8.90 15.89 9.54 21.43 8.85 3.20 30.89 14.14 22.37 35 E1c_E1j KnownJunction 0 0.00 0.00 0.00 0.00 3.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 36 ER1k ExonRegion 1 11.39 23.07 2.39 7.44 48.93 214.70 77.47 6.97 14.03 13.64 84.11 16.97 21.08 37.21 24.44 56.88 94.93 50.82 29.95 54.46 121.20 31.11 105.82 37 E1_Ai KnownBoundary 1 23.49 38.09 3.52 8.26 67.66 137.25 68.58 7.52 17.13 14.00 131.14 30.16 74.18 77.64 63.42 60.24 145.68 58.53 35.11 137.49 155.93 50.15 95.52 38 E1_Aj KnownBoundary 1 34.82 81.89 14.69 44.42 78.44 191.42 94.42 52.94 52.98 55.60 128.72 6.15 21.59 203.19 22.37 161.50 124.17 162.58 89.23 140.75 174.15 43.41 139.40 39 ER1l ExonRegion 1 23.36 55.51 10.21 29.83 78.69 176.38 81.10 36.87 40.62 40.40 173.67 21.01 50.20 156.16 39.22 119.99 152.57 150.35 74.68 158.39 196.13 49.31 129.21 40 ER1m ExonRegion 1 33.39 110.67 53.53 50.84 95.53 211.27 257.18 93.49 118.34 131.95 253.52 53.30 55.43 196.81 68.64 224.03 262.78 261.60 135.15 255.80 347.95 142.09 220.06 41 E1d_E2a KnownJunction 1 9.41 73.34 45.12 85.77 92.44 133.05 81.75 161.34 206.68 216.56 326.24 167.15 190.25 314.09 106.68 260.27 281.53 314.80 89.88 265.26 323.90 186.88 342.56 42 ER2a ExonRegion 1 53.15 124.36 94.99 142.81 235.99 391.85 232.70 190.73 218.91 249.92 466.27 259.96 244.13 370.16 100.66 324.34 407.36 352.07 193.78 356.74 410.51 336.35 353.31 43 E2_Da KnownBoundary 0 12.74 2.96 23.51 24.64 15.20 16.98 35.95 2.01 10.21 15.47 4.95 0.00 7.14 5.47 0.00 0.00 4.39 0.00 4.05 6.33 14.39 2.39 11.44 44 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 8.40 0.00 0.00 0.00 1.62 4.57 5.11 0.00 0.00 0.00 0.00 3.50 4.77 5.06 0.00 0.00 0.00 0.00 0.00 45 E2a_E4a KnownJunction 1 48.97 121.29 107.33 184.39 334.89 585.80 304.94 282.34 302.37 318.80 492.18 248.63 233.43 311.09 104.33 327.95 457.60 325.91 223.07 388.36 304.50 404.08 351.53 46 ER2b ExonRegion 0 8.19 6.09 17.92 18.75 17.66 9.62 27.52 10.00 6.89 8.88 4.46 5.88 12.54 3.23 2.25 3.26 5.28 1.18 3.36 4.77 6.05 8.67 5.48 47 ER3a ExonRegion 0 2.67 7.52 8.16 14.23 15.41 8.26 25.37 7.14 5.05 6.29 14.22 12.12 7.12 7.60 2.26 11.22 9.93 15.52 10.74 12.39 14.09 7.10 7.52 48 E3a_E4a KnownJunction 0 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 4.74 12.60 0.00 3.00 0.00 0.00 4.77 0.00 0.00 3.07 0.00 2.51 0.00 49 ER4a ExonRegion 1 73.72 193.27 125.14 219.19 359.07 500.00 410.08 299.42 318.35 366.09 596.86 446.74 399.11 462.37 126.92 377.05 454.69 281.46 174.63 371.35 241.80 591.40 386.25 50 E4_Da KnownBoundary 1 115.06 347.31 150.14 231.44 341.26 464.90 636.78 341.04 345.60 404.81 677.59 576.19 727.23 447.41 134.87 399.38 443.10 189.28 232.38 371.36 135.17 680.24 398.05 51 ER4b ExonRegion 1 92.50 324.57 111.51 213.17 421.15 506.18 556.53 337.56 369.90 412.38 619.95 833.55 748.40 469.78 137.17 321.38 402.71 195.89 163.06 324.87 162.07 569.57 318.80 52 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E4_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E4b_E4b NovelJunction 1 180.18 386.71 107.71 218.39 601.27 665.81 608.43 305.84 354.89 385.71 737.87 923.40 731.12 540.00 152.91 316.50 570.83 161.88 195.21 413.10 255.26 713.62 364.59 55 ER4c ExonRegion 1 133.34 343.67 110.28 230.33 537.83 621.66 549.44 362.98 386.59 464.50 753.83 922.18 787.93 508.35 136.36 332.88 528.14 181.08 203.86 389.36 238.00 687.56 364.14 56 ER4d ExonRegion 1 111.96 319.32 128.54 243.36 587.64 591.56 547.27 358.37 379.66 458.14 793.83 823.38 645.90 526.42 160.31 346.44 571.05 190.37 211.46 403.11 270.77 720.36 384.47 57 E4c_E5a KnownJunction 1 97.35 373.62 124.77 212.76 745.25 615.27 669.11 343.46 310.91 405.64 781.72 947.41 637.95 590.80 190.99 375.29 530.06 158.89 195.39 409.96 267.74 645.28 384.30 58 ER5a ExonRegion 1 126.51 327.54 176.98 269.40 545.80 532.81 528.58 392.06 402.18 431.17 713.42 1068.31 733.92 607.06 171.95 424.05 512.99 313.36 223.55 475.64 354.67 661.94 417.95 59 E5_Da KnownBoundary 0 6.89 3.35 32.94 17.25 20.88 24.25 60.86 17.25 18.08 12.52 7.58 30.91 20.29 0.00 13.35 4.36 4.02 3.77 0.00 9.14 3.15 22.53 6.57 60 E5a_E6a KnownJunction 1 235.89 454.06 169.80 322.74 663.50 453.38 522.22 381.37 471.61 477.04 764.77 1115.16 777.55 733.48 192.35 480.98 603.46 380.38 265.51 596.41 505.22 565.55 422.63 61 ER5b ExonRegion 0 5.19 2.91 15.72 17.55 21.95 10.83 28.99 10.90 9.05 9.50 2.36 16.69 10.06 4.73 1.23 10.06 3.68 3.34 9.74 8.04 0.91 21.60 2.94 62 E5_Db KnownBoundary 0 5.85 3.35 18.24 25.67 28.10 9.31 29.01 18.73 15.31 13.97 2.68 22.96 6.66 12.24 0.00 7.69 4.77 4.31 25.04 5.88 3.09 39.86 0.00 63 ER5c ExonRegion 0 1.12 2.29 7.12 8.31 10.28 1.95 8.81 3.51 2.47 5.48 1.75 2.30 2.64 4.47 0.00 3.16 2.68 2.43 8.96 1.99 2.20 14.26 0.00 64 ER6a ExonRegion 1 119.79 196.83 113.30 239.00 270.70 338.59 334.83 279.05 321.82 331.68 571.87 724.82 528.21 422.47 117.10 337.75 403.26 289.61 175.42 342.58 350.79 430.45 269.84 65 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER7a ExonRegion 1 183.00 435.35 62.86 108.93 222.74 445.89 469.78 129.38 129.37 126.47 166.38 523.50 343.85 262.13 72.02 225.45 146.93 198.61 113.50 205.50 144.69 244.35 217.64 67 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER8a ExonRegion 1 156.17 435.13 74.40 129.09 337.82 576.61 672.87 112.13 128.26 97.23 75.11 365.82 521.11 255.35 114.37 249.92 86.21 143.07 117.10 130.97 46.73 239.39 206.41 69 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER9a ExonRegion 0 279.35 383.41 327.60 415.88 760.10 628.35 669.25 408.03 333.73 393.64 340.50 698.93 522.07 318.65 308.40 200.41 241.28 118.60 155.11 309.04 92.82 559.21 218.51 71 E9_Da KnownBoundary 1 241.38 394.47 187.75 289.37 661.72 394.26 402.59 257.41 138.63 164.31 26.53 285.54 162.49 78.23 93.58 16.15 12.44 27.36 49.70 130.01 16.37 332.38 59.33 72 ER9b ExonRegion 1 218.16 471.44 287.48 339.73 490.46 327.82 307.09 276.11 153.98 192.70 66.79 205.34 90.49 57.17 107.60 42.57 45.82 56.92 88.08 117.49 40.40 201.43 76.94 73 ER9c ExonRegion 0 11.85 30.50 9.44 20.72 48.16 18.15 15.62 19.19 7.04 8.14 5.22 9.52 3.28 0.00 3.19 2.08 1.98 1.85 0.00 3.62 1.76 5.21 1.17