Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LCLAT1 Gene 0 28.53 61.03 34.20 49.66 52.07 34.05 58.06 67.64 55.89 41.20 30.33 40.39 55.47 27.12 32.31 28.45 28.16 25.09 36.13 49.22 9.21 17.52 12.58 2 466477 Transcript 0 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.16 0.00 0.00 0.00 3 465200 Transcript 0 0.00 6.31 0.00 0.00 0.00 0.00 10.64 2.22 0.00 1.16 0.00 12.60 6.82 0.00 0.00 0.00 0.00 5.14 0.00 11.25 0.00 3.12 0.00 4 379509 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 319406 Transcript 0 18.66 24.47 12.86 19.39 18.46 9.84 36.74 18.89 16.90 12.61 5.88 23.99 26.19 9.18 11.59 13.69 19.86 10.48 13.33 26.08 5.40 5.75 12.03 6 491680 Transcript 0 2.85 6.31 2.47 5.72 6.81 1.87 9.94 7.04 5.73 4.58 3.90 2.16 7.82 3.40 1.29 7.34 3.86 6.44 5.51 7.88 2.12 4.30 1.94 7 488144 Transcript 0 0.00 0.85 0.00 0.00 0.00 0.38 0.83 0.00 0.00 0.70 0.41 0.00 0.00 0.98 0.00 0.00 1.39 0.00 0.67 0.89 0.00 0.00 0.00 8 465538 Transcript 0 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.86 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 359433 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 309052 Transcript 0 2.12 4.07 1.23 1.36 0.00 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 478015 Transcript 0 2.87 1.18 1.06 1.20 1.51 1.33 9.79 1.47 0.00 1.12 0.53 4.18 7.59 2.58 3.31 7.32 3.74 1.72 3.69 2.77 0.64 0.57 0.85 12 476038 Transcript 0 0.00 2.63 0.00 5.09 0.00 0.00 6.23 2.55 1.79 1.67 0.00 0.00 11.85 0.00 0.00 3.59 0.00 1.58 4.80 0.00 0.00 0.00 0.00 13 497423 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 476535 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 444270 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 ER1a ExonRegion 0 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.16 0.00 0.00 0.00 17 ER1b ExonRegion 0 2.12 0.00 0.00 0.00 6.88 0.79 8.70 0.00 0.00 0.00 0.00 0.00 0.00 2.09 2.90 0.00 1.89 0.00 9.56 5.47 0.00 0.00 0.42 18 E1_Ah KnownBoundary 0 3.33 0.00 0.00 0.00 16.47 5.79 21.33 9.12 0.00 1.64 0.00 0.00 0.00 6.95 0.00 0.00 4.58 9.00 12.71 12.02 0.00 0.00 4.35 19 ER1c ExonRegion 0 2.12 0.00 0.00 0.00 10.70 3.67 13.68 0.00 0.00 0.00 0.00 0.00 0.00 4.87 2.90 0.00 3.30 0.00 9.56 8.51 0.00 1.39 2.94 20 E1_Ai KnownBoundary 0 3.78 18.22 0.00 1.53 11.63 8.29 16.25 4.27 1.27 4.14 0.00 0.00 0.00 0.00 5.81 0.00 9.35 2.03 4.61 0.00 0.00 6.06 0.00 21 ER1d ExonRegion 0 4.23 0.00 0.00 0.00 10.70 5.50 15.89 0.00 0.00 0.00 0.00 0.00 0.00 6.50 2.90 0.00 3.30 0.00 9.56 12.77 0.00 2.08 2.94 22 ER1e ExonRegion 0 4.54 0.29 0.00 0.00 13.00 6.81 18.72 0.00 0.00 0.00 0.00 0.00 0.00 7.66 2.90 1.70 3.30 0.26 9.56 14.89 0.00 2.08 2.94 23 ER1f ExonRegion 0 6.35 2.03 0.00 0.00 13.38 9.17 23.83 0.00 0.00 0.00 0.00 0.00 0.00 9.74 2.90 2.97 9.90 1.85 9.56 14.89 0.00 4.17 2.94 24 ER1g ExonRegion 0 6.35 5.47 0.00 0.00 16.05 11.00 28.05 0.00 0.00 0.00 0.00 0.00 0.00 12.38 2.72 2.97 13.20 1.85 12.74 14.89 0.00 6.25 2.94 25 ER1h ExonRegion 0 6.35 6.10 0.00 0.00 16.05 11.00 30.45 0.00 0.00 0.00 0.00 0.00 0.00 12.99 0.00 2.97 13.20 1.85 12.74 14.89 0.00 6.25 2.94 26 ER1i ExonRegion 0 4.23 14.63 0.94 1.86 7.85 7.68 22.04 6.83 9.98 7.40 8.65 0.00 2.10 6.57 9.08 14.28 23.04 16.42 8.04 15.11 3.17 4.58 6.07 27 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.12 8.26 1.79 2.55 0.00 0.00 0.00 0.00 4.70 4.27 0.00 1.74 0.00 3.26 0.00 0.00 0.00 28 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E1a_E5a KnownJunction 0 0.00 3.22 0.00 5.13 0.00 0.00 12.06 20.41 12.07 6.47 11.58 0.00 0.00 0.00 0.00 7.52 23.94 10.90 0.00 14.57 0.00 0.00 0.00 31 E1b_E2a KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 2.71 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E1b_E5a KnownJunction 0 0.00 6.31 0.00 0.00 0.00 0.00 10.64 2.22 0.00 1.16 0.00 12.60 6.82 0.00 0.00 0.00 0.00 5.14 0.00 11.25 0.00 3.12 0.00 33 E1b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER1j ExonRegion 0 0.00 4.07 0.00 0.00 0.00 0.00 5.30 1.73 0.00 1.15 1.93 0.00 4.69 0.00 0.00 5.94 3.30 7.39 0.00 7.66 0.00 0.00 0.00 35 ER1k ExonRegion 0 0.28 5.42 0.98 0.09 0.71 0.00 6.71 1.73 0.66 1.99 1.93 8.66 4.69 0.00 0.00 3.17 0.22 6.90 0.00 8.09 0.59 0.00 0.00 36 ER1l ExonRegion 1 2.12 4.07 1.23 1.36 2.68 0.00 6.62 3.46 2.47 2.29 1.93 17.32 4.69 0.00 0.00 2.97 0.00 5.54 0.00 10.64 2.20 2.08 0.00 37 ER1m ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.79 0.73 0.83 0.00 0.00 0.00 0.00 2.55 1.41 1.18 2.73 1.82 0.00 0.00 0.00 38 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E1c_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER2a ExonRegion 0 1.67 1.34 5.71 5.39 4.88 1.04 7.69 12.46 6.49 9.05 10.41 3.49 3.78 3.14 3.98 3.02 9.10 3.49 4.32 13.04 3.02 0.94 2.23 41 E2_Ab KnownBoundary 0 0.00 2.89 12.12 9.66 10.02 7.78 13.34 20.58 14.26 14.83 6.58 0.00 25.81 9.12 0.00 11.71 9.16 7.30 17.22 20.45 8.71 3.12 7.60 42 ER2b ExonRegion 0 0.97 3.99 8.86 7.91 4.39 3.48 9.64 20.20 23.42 13.91 5.46 9.22 14.11 7.38 6.73 15.11 8.69 15.04 6.66 19.11 3.32 0.44 4.23 43 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E2a_E5a KnownJunction 0 0.00 0.00 1.69 11.39 7.89 7.04 4.50 16.80 13.74 8.81 2.63 12.30 21.59 8.30 10.75 11.88 12.90 8.00 0.00 2.88 2.29 0.00 0.00 45 ER3a ExonRegion 0 5.74 2.36 2.12 2.40 3.01 2.67 19.57 2.95 0.00 2.24 1.05 8.36 8.37 5.16 6.61 14.64 7.48 3.44 7.38 5.55 1.28 1.14 1.70 46 E3_Ab KnownBoundary 0 3.78 0.00 0.00 7.49 3.23 0.00 23.41 8.30 2.84 9.56 0.00 18.91 6.01 2.47 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 47 ER3b ExonRegion 0 2.63 0.00 0.00 1.64 4.11 0.44 5.50 2.38 0.83 3.03 5.17 2.84 3.80 3.19 0.05 1.43 4.04 0.86 0.00 3.74 0.00 1.54 0.00 48 E3a_E5a KnownJunction 0 3.11 0.00 0.00 0.00 6.88 2.56 1.90 0.00 1.79 2.50 17.69 0.00 0.00 0.00 0.00 4.36 4.58 0.00 0.00 0.00 0.00 2.76 0.00 49 ER4a ExonRegion 0 0.00 2.56 0.00 0.00 0.00 1.15 2.50 0.00 0.00 2.10 1.22 0.00 0.00 0.48 0.00 0.00 4.16 0.00 2.01 2.68 0.00 0.00 0.00 50 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 Ix_SR1 SilentIntronRegion 0 11.21 7.31 5.29 7.20 7.28 1.56 13.39 5.53 2.85 2.65 0.48 3.29 2.98 0.07 1.65 2.00 1.98 0.78 2.15 3.56 0.28 0.00 0.51 52 ER5a ExonRegion 0 8.49 18.06 14.11 21.42 15.63 13.53 26.96 46.18 54.73 31.21 39.55 32.77 35.52 38.25 20.41 42.10 56.86 35.99 46.44 73.21 17.02 9.47 11.26 53 E5a_E6a KnownJunction 0 9.48 46.83 18.86 30.13 27.93 15.79 36.52 54.67 48.32 36.96 34.22 41.41 40.91 34.14 8.90 46.48 48.34 47.22 30.02 87.31 16.62 11.39 3.93 54 ER6a ExonRegion 1 8.37 58.08 23.12 36.93 32.27 24.74 77.06 47.65 62.87 46.57 45.85 51.44 47.37 46.56 18.14 44.56 61.62 51.77 51.92 97.89 24.50 10.94 14.37 55 E6_Da KnownBoundary 0 10.82 48.22 17.95 32.33 20.29 20.10 51.45 57.26 51.01 51.55 47.01 30.76 72.24 54.09 26.70 48.53 55.73 48.50 41.60 79.58 16.06 10.23 23.13 56 E6_Db NovelBoundary 0 6.67 38.02 13.75 17.91 23.68 22.77 41.03 23.70 28.24 21.81 41.12 74.27 45.78 30.43 8.78 40.84 36.84 29.97 16.09 82.39 18.35 19.84 3.84 57 ER6b ExonRegion 0 9.35 54.12 21.86 32.62 23.65 33.19 50.61 62.06 59.01 59.12 60.73 66.06 70.20 50.19 20.87 63.57 55.58 66.70 35.76 105.56 25.24 17.54 12.79 58 E6c_E7a KnownJunction 0 7.48 0.00 2.31 4.23 4.33 5.56 4.28 4.68 3.44 5.00 2.63 11.70 0.00 4.59 0.00 12.82 4.58 0.00 0.00 4.92 0.00 6.25 0.00 59 E6c_E8a KnownJunction 0 2.74 26.97 19.54 32.76 8.23 41.62 27.78 60.83 78.15 51.04 56.44 42.76 86.52 44.09 15.45 48.53 44.69 62.26 40.10 126.43 26.44 15.49 7.85 60 E6c_E9a KnownJunction 0 0.00 2.63 0.00 5.09 0.00 0.00 6.23 2.55 1.79 1.67 0.00 0.00 11.85 0.00 0.00 3.59 0.00 1.58 4.80 0.00 0.00 0.00 0.00 61 ER6c ExonRegion 1 7.84 39.00 21.26 38.88 20.78 43.80 41.98 66.09 76.65 59.57 62.08 74.62 76.97 45.76 15.70 61.19 49.71 70.00 34.10 118.77 26.70 23.65 8.81 62 ER6d ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER7a ExonRegion 0 8.02 2.35 3.91 6.31 12.35 3.64 5.55 9.01 4.03 5.41 2.17 3.95 0.00 5.27 0.00 13.82 7.24 0.58 6.20 5.67 0.00 3.44 0.31 64 E7_Da KnownBoundary 0 10.22 3.22 5.85 6.93 7.64 0.00 2.21 11.30 5.32 9.19 2.63 6.90 0.00 2.47 0.00 20.68 8.32 2.03 9.60 5.11 0.00 3.00 0.00 65 ER7b ExonRegion 0 3.20 4.62 4.90 2.73 11.67 0.00 13.69 5.57 5.26 4.48 2.03 4.29 0.00 1.09 0.00 9.57 1.52 3.22 2.96 5.06 0.00 3.94 2.82 66 E7b_E8a KnownJunction 0 0.00 8.81 3.78 5.69 7.47 0.00 16.08 5.96 0.00 2.58 2.47 0.00 0.00 0.00 0.00 8.72 4.02 1.74 0.00 5.82 0.00 5.88 0.00 67 ER8a ExonRegion 0 2.77 24.13 22.96 37.04 26.34 28.53 46.96 62.34 81.11 60.76 48.37 35.02 73.27 40.03 14.57 37.05 50.10 63.15 36.88 97.59 25.27 16.39 11.68 68 E8_Da KnownBoundary 0 3.11 6.31 10.47 19.54 24.79 2.90 28.88 36.68 36.81 30.19 20.06 0.00 13.47 12.13 0.00 15.12 16.27 16.83 15.91 34.52 13.04 6.06 3.41 69 E8_Db KnownBoundary 0 3.48 12.37 17.92 23.34 22.33 13.91 39.66 34.71 39.41 37.74 19.06 6.15 6.82 2.30 8.90 4.27 25.25 45.52 8.19 19.43 15.26 5.51 11.78 70 ER8b ExonRegion 1 6.35 29.83 26.96 41.34 45.49 16.50 61.78 65.68 91.81 71.87 57.34 41.85 78.17 55.22 22.24 39.63 53.91 64.67 36.10 83.69 28.65 15.28 17.62 71 ER8c ExonRegion 0 15.73 46.09 23.62 39.19 35.19 26.73 56.86 82.09 84.47 57.09 65.76 53.00 99.15 56.75 25.03 54.49 58.68 64.67 67.63 96.63 18.43 28.43 25.04 72 E8c_E9a KnownJunction 1 22.82 64.00 19.40 40.85 54.41 20.90 59.09 79.56 79.63 66.00 59.23 81.78 104.70 88.35 13.35 52.21 78.54 48.83 55.81 115.82 22.55 25.78 36.88 73 E9_Aa NovelBoundary 0 3.78 5.92 1.83 16.78 0.00 0.00 17.00 4.97 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 3.93 0.00 0.00 3.26 0.00 0.00 0.00 74 ER9a ExonRegion 1 14.50 56.88 14.27 50.28 52.67 43.33 83.40 77.40 81.32 60.34 69.26 74.36 87.89 63.97 19.42 58.29 53.49 68.14 50.05 85.93 19.89 22.84 31.13 75 E9_Da NovelBoundary 0 24.52 46.57 7.45 44.38 46.01 24.30 68.14 52.29 50.55 43.33 23.43 36.16 58.60 32.49 20.64 41.10 34.60 51.94 24.66 66.86 18.47 16.04 11.52 76 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.18 0.00 0.00 8.42 2.40 4.05 2.43 0.00 2.63 0.00 77 E9b_E11b KnownJunction 1 14.15 26.05 3.08 33.80 22.75 18.34 45.05 70.61 85.10 66.89 36.22 18.76 121.10 55.39 30.29 54.77 52.64 97.58 48.94 75.17 19.40 41.39 26.55 78 E9_Dc NovelBoundary 0 17.19 3.35 7.98 14.75 12.99 2.78 8.35 6.41 0.00 8.22 0.00 0.00 7.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 E9c_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80 ER9b ExonRegion 1 16.93 40.90 7.22 46.64 38.35 35.05 62.67 78.55 82.62 63.97 45.96 38.48 130.80 62.44 25.79 59.11 61.25 93.41 53.44 87.47 25.22 37.04 25.12 81 ER9c ExonRegion 0 8.23 8.13 3.68 12.72 12.78 4.48 13.98 3.65 0.69 0.51 0.21 0.00 4.69 1.44 0.00 0.99 0.00 1.64 5.66 4.49 0.98 1.39 0.00 82 Ix_AR1 ActiveIntronRegion 0 32.10 17.86 11.49 12.23 22.10 1.89 21.31 14.23 7.29 7.76 1.67 4.51 5.74 0.47 5.75 4.64 6.50 3.70 2.16 7.30 0.00 0.77 1.04 83 ER10a ExonRegion 0 4.67 17.92 4.06 2.79 8.19 1.01 12.49 5.99 2.60 3.84 1.08 10.72 12.37 3.72 5.33 3.65 6.92 3.39 2.43 9.61 2.43 1.59 1.62 84 E10_Da KnownBoundary 0 3.70 18.15 155.08 234.34 8.06 5.56 48.36 132.79 211.14 134.04 2.68 0.00 5.84 4.83 10.26 12.39 16.36 33.49 18.64 24.42 0.00 5.82 12.55 85 ER10b ExonRegion 1 18.66 24.47 12.86 19.39 18.46 9.84 36.74 18.89 16.90 12.61 5.88 23.99 26.19 9.18 11.59 13.69 19.86 10.48 13.33 26.08 5.40 5.75 12.03 86 E10_Db NovelBoundary 0 0.00 0.00 1.57 2.86 0.00 0.00 2.21 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.48 8.42 0.00 0.00 3.26 0.00 3.12 0.00 87 ER11a ExonRegion 0 5.64 16.27 2.45 13.17 8.92 6.72 15.89 27.08 28.41 19.88 18.68 8.66 42.21 17.87 7.74 24.77 17.60 32.03 24.42 31.91 11.75 14.58 8.81 88 ER11b ExonRegion 0 6.31 35.53 7.57 23.04 21.59 29.74 39.11 42.07 53.19 38.98 33.73 44.47 68.92 41.92 20.33 37.12 34.93 42.04 50.35 53.47 13.84 16.80 12.73 89 E11_Da KnownBoundary 0 7.48 3.22 0.00 1.96 3.74 2.27 0.00 1.73 1.45 0.00 0.00 0.00 12.34 2.83 0.00 0.00 0.00 0.00 3.95 2.68 0.00 0.00 3.50 90 ER11c ExonRegion 0 7.85 15.33 0.00 0.00 3.02 5.39 10.97 0.00 0.00 0.00 0.00 1.55 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 91 E11_Db KnownBoundary 0 3.78 36.31 2.84 3.73 19.10 20.61 36.88 2.55 5.01 0.00 2.47 0.00 6.01 4.59 0.00 0.00 0.00 4.52 4.14 2.81 0.00 0.00 0.00 92 ER11d ExonRegion 0 51.37 109.46 65.80 91.51 97.63 60.71 91.06 123.03 93.33 68.81 48.16 59.54 84.96 37.82 58.85 38.25 33.60 30.89 54.04 68.11 10.90 29.87 15.95 93 ER11e ExonRegion 0 2.12 4.07 1.23 1.36 0.00 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00