Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRMT61B Gene 0 52.82 90.60 100.70 104.59 98.64 96.30 83.94 49.20 41.64 51.04 58.49 54.27 33.56 51.99 60.74 50.13 60.59 35.33 32.71 55.78 21.80 34.78 26.37 2 306108 Transcript 1 68.57 113.41 107.61 89.51 130.80 93.96 70.98 47.08 38.97 46.82 57.56 36.13 10.83 24.43 62.61 37.11 55.07 14.79 33.44 46.60 12.24 34.08 22.59 3 439947 Transcript 0 7.48 5.39 1.42 2.00 0.00 2.90 2.25 2.05 0.00 0.00 2.32 5.70 6.66 4.89 0.00 0.00 4.30 2.45 0.00 2.49 0.00 0.00 0.00 4 484060 Transcript 0 0.00 0.03 0.06 3.10 2.52 2.30 0.16 3.30 1.06 4.03 1.69 0.00 1.05 1.44 4.26 1.74 3.55 0.02 0.04 0.00 0.00 2.38 0.04 5 490390 Transcript 1 6.06 8.40 25.67 59.75 34.92 15.24 39.86 25.45 17.04 14.15 10.20 32.08 29.52 5.74 8.75 6.68 12.50 6.22 8.06 21.67 2.76 6.34 6.00 6 419999 Transcript 0 22.82 21.11 10.44 6.03 25.47 2.67 20.89 7.72 7.78 10.91 14.16 23.56 8.12 0.00 18.17 10.00 34.97 1.78 4.61 2.43 2.53 5.27 0.00 7 IG35_AR2 ActiveIntergenicRegion 0 2.89 0.24 6.38 1.39 0.69 0.00 1.45 1.56 0.22 0.00 5.24 15.84 0.00 1.49 6.32 7.39 3.15 0.33 2.66 1.01 3.41 0.56 0.49 8 ER1a ExonRegion 0 0.60 9.01 3.15 3.12 3.82 23.05 10.59 0.99 2.82 4.26 3.04 0.00 0.00 4.18 6.22 5.94 4.24 1.58 4.55 7.29 1.89 5.36 4.20 9 ER1b ExonRegion 0 26.43 42.28 89.12 59.36 59.81 91.79 67.86 39.64 36.99 50.97 63.11 18.94 15.12 80.89 64.79 62.18 74.62 66.14 44.36 65.69 41.33 34.72 34.77 10 E1_Da NovelBoundary 0 10.22 14.27 65.73 45.08 34.89 30.83 50.61 25.71 14.87 34.52 34.11 13.95 6.49 19.01 27.81 23.41 25.90 39.59 15.53 32.41 17.17 11.14 7.68 11 E1a_E2a KnownJunction 0 52.31 48.61 97.90 82.94 141.77 134.07 51.01 46.29 42.97 71.10 62.28 51.77 32.95 51.80 52.41 33.84 69.57 22.01 36.61 77.47 14.95 22.23 40.21 12 E1a_E5a NovelJunction 0 7.33 12.56 3.28 10.19 4.16 2.33 2.08 4.48 6.66 8.38 12.32 27.61 0.00 21.43 10.75 12.05 0.00 10.40 4.80 15.47 5.13 2.45 7.68 13 I1 Intron 0 14.75 27.63 38.08 44.57 24.50 12.78 32.78 18.73 13.63 16.77 7.19 19.06 24.04 7.60 12.27 16.25 11.91 18.37 11.93 24.83 4.04 6.66 6.50 14 I1_AR1 ActiveIntronRegion 0 5.71 17.75 31.52 32.76 25.82 8.12 38.15 16.83 14.82 12.83 13.10 23.81 11.47 8.75 10.94 12.07 11.91 21.71 14.83 26.55 3.28 5.74 5.87 15 I1_SR1 SilentIntronRegion 0 15.55 28.51 38.69 45.64 24.41 13.20 32.36 18.91 13.55 17.13 6.68 18.68 25.15 7.51 12.40 16.63 11.92 18.10 11.69 24.71 4.11 6.75 6.56 16 E2_Aa NovelBoundary 0 13.78 28.61 37.37 44.68 40.32 2.56 69.42 37.83 22.74 14.69 10.32 11.70 28.89 4.47 16.32 3.85 22.53 11.69 17.98 55.10 11.74 2.45 16.39 17 ER2a ExonRegion 0 54.04 93.29 120.69 109.89 118.30 86.99 89.99 55.61 57.56 55.60 84.41 82.55 57.74 72.55 66.31 73.44 90.57 29.71 41.41 75.25 41.98 30.16 46.53 18 E2_Da NovelBoundary 1 21.04 46.11 55.11 38.12 20.80 5.45 41.34 33.85 25.43 26.67 5.37 35.41 21.26 6.95 34.49 23.33 23.66 22.01 4.80 34.32 0.00 20.15 7.26 19 E2a_E4b KnownJunction 0 66.60 98.47 104.76 117.43 153.82 99.26 80.69 40.05 47.02 45.10 99.13 59.57 33.76 55.74 87.03 54.86 109.02 28.56 23.53 65.71 20.14 33.43 30.22 20 I2 Intron 0 7.95 16.73 25.55 39.12 19.18 10.43 28.16 18.75 18.01 20.67 5.79 18.08 23.74 5.13 10.08 15.33 9.26 13.71 10.03 27.84 3.26 7.59 7.79 21 I2_SR1 SilentIntronRegion 0 7.95 16.75 25.57 39.15 19.19 10.44 28.18 18.77 18.02 20.69 5.79 18.09 23.76 5.13 10.08 15.34 9.27 13.72 10.03 27.85 3.26 7.59 7.80 22 E3_Aa NovelBoundary 1 494.31 275.48 213.15 250.82 365.87 211.81 275.53 228.21 246.24 201.63 161.73 116.59 239.43 82.76 79.73 340.59 237.03 240.31 310.60 331.86 142.52 110.89 260.53 23 ER3a ExonRegion 0 0.00 0.05 0.13 1.54 1.13 1.88 0.31 1.55 0.65 2.51 0.97 0.00 2.10 0.77 2.21 0.31 2.52 0.05 0.08 0.00 0.00 1.64 0.08 24 E3_Da NovelBoundary 0 29.04 11.18 19.01 29.23 28.86 18.80 39.79 8.58 13.05 12.38 6.53 5.85 13.31 0.00 0.00 3.50 13.00 23.42 7.44 34.58 11.00 7.90 4.35 25 E3a_E4b KnownJunction 0 0.00 0.00 0.00 4.66 3.90 2.73 0.00 5.05 1.48 5.56 2.42 0.00 0.00 2.12 6.30 3.16 4.58 0.00 0.00 0.00 0.00 3.12 0.00 26 E4_Aa NovelBoundary 1 34.82 32.49 51.83 62.83 29.46 11.07 25.70 31.18 29.05 25.09 4.74 31.36 32.95 4.77 17.06 8.72 17.02 3.81 7.81 23.65 6.05 5.02 8.71 27 ER4a ExonRegion 1 6.06 8.40 25.67 59.75 34.92 15.24 39.86 25.45 17.04 14.15 10.20 32.08 29.52 5.74 8.75 6.68 12.50 6.22 8.06 21.67 2.76 6.34 6.00 28 E4_Ab KnownBoundary 1 13.48 18.09 29.66 75.28 52.97 12.66 44.60 45.63 19.27 22.19 5.05 36.61 52.59 5.36 25.09 4.36 16.36 6.22 3.67 44.74 2.78 9.12 9.73 29 ER4b ExonRegion 0 82.50 146.90 165.11 214.89 193.58 171.35 150.38 88.73 68.41 81.65 106.41 115.94 77.16 70.06 96.14 83.78 104.20 36.15 45.97 84.02 22.48 61.83 39.94 30 E4_Da NovelBoundary 1 17.56 57.42 34.06 89.10 43.80 8.18 82.41 29.66 21.47 22.62 9.74 18.91 80.84 7.30 27.57 17.17 30.67 17.95 14.40 39.05 5.50 14.21 8.71 31 E4a_E5a KnownJunction 0 72.46 207.73 148.28 205.30 191.17 158.49 149.62 87.08 59.37 75.86 90.81 91.68 80.03 48.03 90.36 77.67 73.49 25.12 44.05 89.16 7.72 73.17 15.88 32 I4 Intron 0 14.54 20.13 24.96 44.46 31.65 15.32 36.36 14.94 14.61 13.65 3.69 11.37 16.64 4.99 9.28 11.65 10.88 15.10 9.65 18.09 3.99 4.05 8.66 33 I4_SR1 SilentIntronRegion 0 13.28 19.38 24.90 43.39 30.26 14.91 35.85 14.46 14.33 13.44 3.56 11.12 16.32 5.03 9.20 10.95 10.88 14.64 9.46 17.65 3.89 3.88 8.26 34 I4_SR2 SilentIntronRegion 0 60.21 46.97 27.83 82.68 83.34 31.26 56.64 32.51 24.58 21.57 8.43 20.40 29.33 3.99 12.06 37.17 11.22 31.97 17.35 34.27 7.86 10.27 23.21 35 E5_Aa NovelBoundary 1 10.08 66.17 47.34 88.77 45.76 2.44 19.43 41.98 33.68 25.65 0.00 5.70 35.55 11.36 19.28 20.59 12.62 13.06 3.86 15.21 0.00 8.14 7.09 36 ER5a ExonRegion 0 96.62 175.86 143.53 179.72 203.33 127.53 143.16 56.98 57.47 70.37 95.85 114.45 64.74 62.41 84.96 77.82 76.17 25.65 29.33 78.03 13.73 71.16 30.87 37 E5_Da NovelBoundary 1 3.04 43.35 37.82 64.76 26.66 9.71 22.04 35.73 25.75 25.06 2.68 75.17 12.82 16.66 27.94 35.97 4.39 11.32 48.94 11.70 5.25 0.00 15.19 38 E5a_E6a KnownJunction 1 134.25 185.56 133.53 173.90 224.19 164.05 122.33 41.94 53.04 53.29 75.70 107.59 60.71 37.91 106.43 42.13 47.12 5.84 12.14 62.45 8.96 65.76 20.49 39 E5a_E7a KnownJunction 0 7.48 5.39 1.42 2.00 0.00 2.90 2.25 2.05 0.00 0.00 2.32 5.70 6.66 4.89 0.00 0.00 4.30 2.45 0.00 2.49 0.00 0.00 0.00 40 I5 Intron 0 14.71 64.15 21.08 35.39 30.90 22.74 29.73 13.49 11.81 13.17 5.99 18.79 13.86 11.58 10.73 15.25 7.41 8.46 5.79 15.92 2.12 4.46 4.40 41 I5_SR1 SilentIntronRegion 0 14.77 64.41 21.17 35.54 31.01 22.84 29.85 13.55 11.86 13.22 6.02 18.87 13.91 11.63 10.77 15.32 7.44 8.49 5.81 15.99 2.13 4.48 4.41 42 E6_Aa NovelBoundary 1 61.86 124.32 31.13 77.91 67.74 19.76 41.29 9.98 12.01 24.28 11.95 26.11 46.26 2.47 4.45 8.72 16.83 2.11 33.13 18.60 2.53 7.78 0.00 43 E6_Ab NovelBoundary 0 114.32 226.67 122.73 207.47 180.73 87.56 138.58 51.63 52.98 82.17 45.12 77.28 19.32 29.84 47.72 27.00 31.98 15.71 47.15 68.14 5.37 27.56 10.93 44 ER6a ExonRegion 1 119.32 215.81 138.85 175.98 198.34 143.15 128.67 61.36 58.90 65.73 83.72 107.97 48.37 41.52 97.37 48.30 48.28 14.20 23.29 76.20 11.43 59.38 16.89 45 ER6b ExonRegion 1 146.49 232.41 148.97 205.02 221.51 162.03 176.94 73.58 60.79 70.94 78.56 112.88 54.27 43.85 120.19 56.05 47.63 18.61 33.22 88.15 10.23 55.96 15.31 46 ER6c ExonRegion 0 142.19 254.88 191.85 268.24 234.02 243.45 198.61 93.51 87.34 91.59 92.28 154.42 83.52 56.03 122.63 94.00 81.51 39.11 50.52 103.08 9.86 67.98 29.97 47 E6_Db KnownBoundary 0 163.07 312.12 266.22 355.30 291.51 246.05 223.46 77.71 106.97 102.02 113.98 169.26 54.38 69.52 133.51 58.70 94.25 36.69 57.88 90.76 13.71 57.68 48.49 48 ER6d ExonRegion 0 134.17 286.69 216.02 255.99 267.69 175.09 197.86 96.55 85.72 102.56 101.71 142.03 84.47 62.33 112.93 74.92 97.91 32.88 50.69 104.25 14.25 64.23 35.88 49 E6_Dc NovelBoundary 1 176.62 299.49 198.22 180.70 340.58 151.50 181.20 91.43 75.52 85.07 88.44 86.28 41.23 36.20 117.68 66.82 60.87 31.50 32.85 86.99 26.75 48.93 39.52 50 E6c_E7a KnownJunction 0 22.82 21.11 10.44 6.03 25.47 2.67 20.89 7.72 7.78 10.91 14.16 23.56 8.12 0.00 18.17 10.00 34.97 1.78 4.61 2.43 2.53 5.27 0.00 51 E6_Dd NovelBoundary 1 51.56 128.07 49.64 88.30 61.55 42.76 73.31 34.46 7.03 29.15 9.16 33.61 21.10 19.48 23.98 31.87 17.48 8.50 3.58 37.07 5.81 5.82 4.18 52 E6d_E7a KnownJunction 0 100.68 142.01 154.25 124.89 171.73 128.56 91.73 66.70 53.96 64.47 81.86 42.31 12.34 36.08 84.06 49.13 84.06 18.90 56.47 65.77 15.57 49.66 31.16 53 ER6e ExonRegion 1 104.41 189.20 165.43 140.53 216.83 130.27 110.62 73.56 60.11 71.75 87.77 66.06 20.15 33.02 97.57 56.25 76.90 23.88 39.29 66.75 19.26 47.23 32.41 54 I6 Intron 0 40.83 71.70 62.96 95.70 66.47 33.14 61.36 35.41 25.51 27.86 8.57 30.19 35.51 13.21 19.81 11.20 10.61 6.43 7.06 21.94 1.47 9.47 6.19 55 I6_SR1 SilentIntronRegion 0 16.68 67.14 24.80 44.28 29.93 13.09 41.85 17.17 13.00 11.33 6.09 40.80 17.25 9.80 21.44 15.47 10.91 6.14 7.88 16.23 0.00 0.88 9.01 56 I6_AR1 ActiveIntronRegion 0 44.61 72.70 68.92 103.78 72.18 36.27 64.55 38.29 27.48 30.44 8.98 28.78 38.39 13.78 19.66 10.63 10.62 6.51 6.98 22.89 1.69 10.79 5.80 57 E7_Aa NovelBoundary 1 32.30 106.10 53.64 105.48 57.56 50.60 65.80 42.80 31.89 41.66 7.63 26.26 53.89 2.12 47.35 20.59 18.23 13.47 0.00 12.66 0.00 5.45 4.10 58 ER7a ExonRegion 0 83.90 174.13 144.08 161.17 96.40 121.01 69.47 85.20 56.37 74.65 75.93 57.06 44.56 35.71 78.85 41.99 80.03 24.66 34.88 43.48 9.38 45.81 25.90 59 E7_Da NovelBoundary 0 26.97 34.47 47.49 38.12 20.29 19.93 36.57 20.04 1.50 15.15 0.00 0.00 6.82 5.12 10.63 7.52 0.00 4.93 0.00 5.50 0.00 11.82 19.29 60 E7a_E8a KnownJunction 0 122.98 242.19 166.79 188.52 151.10 100.45 75.39 124.25 73.70 81.02 77.76 113.74 59.09 61.98 135.86 48.28 79.10 22.68 50.35 63.85 14.89 39.37 35.25 61 E8_Aa NovelBoundary 0 35.93 71.96 112.56 179.40 29.46 26.86 96.50 47.48 21.76 51.82 7.32 31.36 20.45 2.30 14.59 20.17 4.77 10.03 0.00 5.75 0.00 13.59 3.59 62 ER8a ExonRegion 1 52.90 71.04 64.82 63.77 55.02 56.94 45.74 32.75 22.51 28.60 19.75 38.77 15.22 15.35 28.98 15.02 18.52 6.53 12.36 18.31 2.93 15.04 9.65 63 ER8b ExonRegion 1 18.49 22.05 27.47 32.14 59.85 22.87 28.15 10.19 8.78 5.98 9.36 41.93 8.39 5.39 10.54 0.00 0.69 4.57 4.19 4.59 1.04 7.24 3.40