Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDC42EP3 Gene 0 64.59 309.26 88.10 77.40 81.99 72.20 107.89 76.38 34.48 88.53 58.87 88.35 117.48 93.27 20.71 58.89 68.24 165.95 55.80 179.11 96.50 66.07 21.83 2 453555 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.03 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 494083 Transcript 0 0.05 0.06 0.01 0.14 0.02 0.04 0.09 0.03 0.03 0.01 0.01 0.50 0.25 0.14 0.14 0.11 0.08 0.02 0.08 0.33 0.06 0.02 0.06 4 457889 Transcript 0 0.00 0.00 0.20 0.00 0.00 0.82 0.88 0.00 0.00 0.00 1.08 0.00 0.00 0.81 0.00 2.42 1.96 2.16 0.00 1.82 0.49 1.47 0.00 5 295324 Transcript 0 59.39 267.52 76.78 61.33 66.27 60.20 87.48 68.18 32.57 82.03 51.17 70.79 116.63 132.62 24.33 61.74 58.74 189.11 64.06 163.09 105.21 69.59 28.85 6 422687 Transcript 0 3.67 7.04 12.37 5.28 6.44 0.53 6.37 4.20 8.17 5.94 2.04 11.66 3.77 6.60 1.36 5.71 5.11 7.62 3.39 11.68 2.12 0.40 1.14 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.17 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E4_Aa NovelBoundary 0 6.37 11.51 35.89 30.00 4.33 5.34 41.91 33.64 30.73 24.82 0.00 11.70 0.00 2.30 10.63 3.67 7.76 11.77 11.95 32.98 0.00 5.02 10.59 14 ER4a ExonRegion 0 7.29 15.68 0.00 2.95 6.51 11.02 20.98 6.97 4.21 2.72 1.04 14.37 4.59 2.46 1.17 14.00 3.44 9.33 14.28 22.97 10.20 3.26 7.72 15 E4_Da KnownBoundary 0 64.23 71.57 177.20 270.06 93.55 46.85 121.58 401.66 247.10 221.77 11.85 12.90 0.00 0.00 5.32 36.74 39.55 184.34 44.80 132.76 34.97 23.70 31.67 16 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4b ExonRegion 0 0.16 0.18 0.03 0.41 0.06 0.12 0.28 0.10 0.10 0.02 0.03 1.49 0.76 0.43 0.42 0.34 0.23 0.07 0.25 0.98 0.19 0.06 0.17 18 ER5a ExonRegion 0 0.00 0.00 0.41 0.00 0.00 1.63 1.77 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.66 0.00 0.00 0.00 0.95 0.98 0.00 0.00 19 ER5b ExonRegion 0 1.02 3.74 0.92 0.14 2.57 15.74 9.97 0.02 0.00 2.65 1.90 0.00 0.00 1.46 0.00 3.70 5.11 7.39 0.03 10.42 2.04 2.36 0.00 20 E5_Da KnownBoundary 0 0.00 5.59 6.45 3.40 0.00 0.00 1.63 0.00 2.81 8.25 0.00 0.00 0.00 2.65 0.00 3.42 0.00 14.38 8.19 11.25 2.78 0.00 4.01 21 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 4.19 3.93 4.31 0.00 2.68 0.00 2.94 0.00 22 ER5c ExonRegion 0 15.45 28.93 10.37 3.38 6.06 26.46 11.81 6.15 4.10 14.74 19.69 3.99 10.47 32.22 5.45 14.55 15.21 65.34 12.09 34.91 45.94 9.49 5.41 23 E5b_E7a KnownJunction 0 20.15 73.28 45.47 21.04 10.87 13.46 16.78 39.64 29.34 62.56 51.07 49.97 145.12 227.85 29.42 81.43 56.66 275.71 77.56 129.43 140.17 78.20 44.30 24 I5_AR2 ActiveIntronRegion 0 8.46 12.03 21.09 5.85 10.84 2.21 11.40 4.25 2.17 3.25 1.37 8.94 8.46 3.26 1.91 2.10 2.74 13.62 11.24 15.25 2.36 0.00 1.38 25 I5_AR3 ActiveIntronRegion 1 2.54 6.95 5.25 3.03 2.86 1.96 9.32 1.70 2.11 2.29 1.81 15.23 36.64 4.73 2.73 4.08 4.24 3.36 2.44 16.34 0.72 0.83 3.85 26 I5_SR3 SilentIntronRegion 0 5.44 8.91 6.15 4.05 5.37 1.80 11.63 4.89 4.90 6.24 1.51 21.28 19.86 15.03 3.54 9.92 8.73 9.55 4.39 23.59 2.65 0.35 1.66 27 I5_AR5 ActiveIntronRegion 0 14.02 24.14 8.04 9.66 13.28 1.87 10.60 9.41 4.80 10.72 2.01 23.22 14.51 9.82 6.32 7.61 3.07 5.25 3.76 12.34 0.92 0.43 3.74 28 I5_SR4 SilentIntronRegion 1 5.10 24.37 14.02 13.48 7.48 2.24 21.70 10.59 8.17 10.90 0.00 51.31 25.01 10.29 4.35 12.44 4.22 5.75 5.66 19.11 0.00 0.00 4.68 29 I5_AR6 ActiveIntronRegion 1 9.85 29.56 21.09 16.69 14.76 5.19 13.21 10.56 3.25 14.42 0.00 26.91 26.12 9.97 6.89 19.14 5.68 11.64 1.95 21.25 3.63 0.00 1.71 30 I5_SR5 SilentIntronRegion 0 10.99 17.91 14.38 10.58 11.32 1.99 10.29 9.28 6.26 9.24 0.77 16.01 17.11 12.29 7.94 12.91 8.05 18.60 7.55 21.05 3.86 0.69 2.93 31 I5_AR7 ActiveIntronRegion 1 14.89 51.22 27.06 22.97 14.61 0.78 19.56 20.47 18.38 16.57 0.90 21.91 21.23 9.01 6.29 18.17 9.35 15.66 9.95 31.01 4.55 2.70 5.25 32 E6_Aa NovelBoundary 0 0.00 0.00 13.16 8.46 0.00 2.90 14.00 12.73 11.86 12.03 5.16 29.71 14.45 7.77 0.00 15.21 17.86 19.19 3.95 28.38 5.19 0.00 19.63 33 ER6a ExonRegion 1 7.34 14.09 17.76 10.55 12.88 1.07 12.74 8.41 11.95 10.57 4.08 23.31 7.54 13.20 2.72 11.42 10.23 15.24 6.78 23.36 4.24 0.81 2.27 34 E6_Da NovelBoundary 1 0.00 3.03 23.12 11.75 12.99 7.33 9.63 7.72 15.97 10.02 0.00 43.66 12.66 14.54 0.00 3.50 12.90 3.69 4.80 20.39 3.15 0.00 0.00 35 E6a_E7a KnownJunction 0 0.00 0.00 6.98 0.00 0.00 0.00 0.00 0.00 4.40 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 I6 Intron 0 5.45 11.48 15.01 5.63 9.27 4.36 9.57 10.20 8.75 8.80 2.30 22.65 22.06 14.15 3.13 6.48 4.58 4.73 4.42 18.97 1.96 1.24 0.58 37 I6_AR1 ActiveIntronRegion 0 5.68 12.55 15.61 6.07 9.17 4.83 10.33 11.03 9.10 9.15 2.33 24.11 23.54 14.07 3.48 6.36 4.59 4.73 4.60 19.70 1.73 1.27 0.44 38 ER7a ExonRegion 0 69.64 268.26 188.92 124.52 103.55 171.90 136.52 150.87 103.25 256.67 292.31 270.47 557.06 425.78 54.85 257.02 318.29 785.02 188.28 599.82 419.84 229.64 81.43 39 E7_Da KnownBoundary 1 78.98 265.08 201.06 193.38 121.99 141.91 161.99 208.20 125.78 252.39 249.91 371.07 587.95 346.34 37.21 241.65 275.36 699.48 179.21 586.70 396.24 238.99 69.49 40 ER7b ExonRegion 0 101.22 266.79 244.52 225.32 122.48 156.46 132.23 239.70 145.76 313.25 362.39 416.96 720.22 480.50 59.24 333.65 408.78 994.60 253.24 658.37 524.77 295.15 106.62 41 E7_Db KnownBoundary 1 129.80 326.59 273.23 251.32 146.26 161.95 159.69 268.83 130.58 336.20 357.72 525.02 679.01 521.28 57.48 364.43 478.82 1110.37 330.36 773.53 591.64 257.55 107.56 42 ER7c ExonRegion 0 79.47 378.16 209.47 163.60 102.81 164.51 171.94 134.47 87.58 215.00 272.93 264.82 371.74 405.35 59.42 242.95 269.46 829.37 137.53 497.53 513.69 175.29 71.95 43 E7_Dc KnownBoundary 0 90.98 573.78 249.28 188.62 95.84 161.55 241.70 144.38 85.88 217.53 238.06 130.99 156.48 411.68 61.19 267.37 252.27 885.65 140.71 557.87 463.76 187.31 52.67 44 ER7d ExonRegion 0 142.55 700.36 174.50 159.57 181.88 140.69 233.85 158.76 64.28 168.80 82.75 158.42 194.29 137.77 38.12 89.25 104.37 226.27 102.53 324.93 129.51 121.08 36.83