Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PUS10 Gene 0 17.03 14.17 9.93 13.49 14.32 19.98 15.47 6.82 7.38 8.27 24.79 36.80 35.71 38.31 36.39 26.04 24.85 6.33 10.58 10.96 8.39 9.25 6.55 2 316752 Transcript 0 29.03 17.39 14.87 18.00 21.72 23.55 21.41 12.62 10.24 9.37 20.67 32.82 45.60 28.59 39.81 23.40 18.85 3.71 6.82 14.37 3.51 15.89 4.26 3 444324 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 421319 Transcript 0 4.44 1.60 5.85 0.26 0.01 3.15 1.21 1.61 0.00 1.07 1.75 0.00 0.51 12.28 0.80 5.47 3.14 2.90 4.33 0.56 1.98 5.88 0.38 5 398658 Transcript 0 11.36 13.91 8.18 13.56 12.67 14.99 14.67 6.65 4.21 8.10 6.03 18.79 15.20 14.67 22.64 15.63 11.64 2.15 14.11 11.45 5.09 8.23 9.38 6 430495 Transcript 0 0.00 0.00 0.00 1.66 0.22 2.14 0.88 0.00 0.00 0.19 1.40 2.10 0.00 2.60 0.97 2.98 2.69 0.75 0.00 0.71 0.00 1.65 2.43 7 407787 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 3.49 2.00 5.17 2.89 0.67 2.48 4.26 3.90 2.88 2.20 7.42 0.89 0.00 5.20 5.53 8.52 8.35 0.69 1.59 8.99 2.20 2.40 1.50 9 E1_Ab KnownBoundary 0 6.30 6.58 6.86 3.83 0.00 2.90 4.42 7.19 6.80 2.95 11.63 0.00 0.00 10.36 9.77 23.33 7.85 2.36 0.00 8.88 0.00 3.12 3.50 10 ER1b ExonRegion 0 1.03 2.51 3.53 2.79 0.00 1.24 1.76 4.38 3.79 2.51 11.19 2.52 3.71 8.72 6.48 13.55 4.30 0.00 0.00 2.77 1.18 2.86 7.44 11 E1a_E4a KnownJunction 0 0.00 0.00 0.00 1.30 0.00 0.00 0.00 2.55 0.00 2.55 5.16 7.65 19.97 0.00 4.45 14.87 3.83 0.00 0.00 0.00 3.15 2.63 3.84 12 ER2a ExonRegion 0 2.51 3.19 3.61 0.51 0.03 6.29 2.42 0.89 0.00 0.60 3.50 0.00 1.01 5.01 1.61 2.23 1.98 1.71 3.86 1.11 0.81 2.64 0.77 13 E2_Da NovelBoundary 0 0.00 0.00 1.57 4.10 0.00 0.00 0.00 0.00 3.59 1.67 2.68 5.25 0.00 0.00 0.00 4.36 18.05 0.00 8.85 2.68 3.03 0.00 0.00 14 E2a_E4a KnownJunction 0 6.37 0.00 8.10 0.00 0.00 0.00 0.00 2.34 0.00 1.53 0.00 0.00 0.00 19.54 0.00 8.72 4.30 4.10 4.80 0.00 3.15 9.12 0.00 15 E3_Aa NovelBoundary 0 0.00 11.38 6.39 4.13 11.71 17.72 14.44 0.00 1.33 3.06 10.00 0.00 5.84 17.19 14.09 19.31 15.99 15.46 3.86 3.20 8.03 5.14 19.21 16 ER3a ExonRegion 0 0.00 0.27 0.00 1.18 0.00 1.83 0.06 0.00 0.47 0.05 3.69 0.00 4.38 5.85 3.42 0.20 1.98 0.00 0.28 2.13 0.00 0.14 1.31 17 E3a_E4a KnownJunction 0 0.00 0.00 1.71 7.13 0.00 0.00 0.00 2.30 1.39 1.32 4.63 0.00 0.00 0.00 4.45 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 18 E3b_E4a KnownJunction 0 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.24 0.00 0.00 0.00 0.00 4.35 19 ER3b ExonRegion 0 0.00 0.00 0.00 1.70 0.67 6.42 2.65 0.00 0.00 0.57 1.93 0.00 0.00 2.84 2.90 0.74 3.30 0.00 0.00 2.13 0.00 2.08 2.94 20 ER4a ExonRegion 0 6.42 7.47 4.49 11.54 13.44 28.59 14.06 7.89 8.59 5.65 51.06 13.85 14.44 28.02 21.83 21.69 31.74 9.79 19.43 9.25 12.10 6.61 7.31 21 E4a_E5a KnownJunction 1 17.63 9.34 4.64 21.71 12.14 27.71 7.02 4.11 5.38 1.64 47.64 12.00 6.82 11.77 50.19 30.59 20.94 11.98 40.94 6.52 15.32 8.63 3.84 22 E4a_E6a KnownJunction 1 0.00 0.00 0.00 5.13 0.00 0.00 0.00 3.74 8.39 1.34 45.22 12.60 6.82 35.91 14.83 0.00 38.34 6.18 0.00 11.51 2.90 7.90 7.85 23 ER5a ExonRegion 0 5.38 4.45 14.90 23.00 7.86 11.44 7.71 5.90 7.55 1.69 29.73 16.56 7.07 14.31 28.18 30.19 20.64 9.50 30.34 7.67 6.26 3.54 7.64 24 E5_Da KnownBoundary 0 0.00 6.38 20.11 24.84 9.76 4.77 4.28 5.91 7.47 1.02 14.48 29.11 20.62 16.89 14.46 12.13 8.98 4.89 8.28 14.76 4.63 2.82 4.35 25 ER5b ExonRegion 0 12.69 17.50 16.31 19.54 22.74 30.48 17.76 3.75 6.14 2.60 17.12 19.71 12.06 16.40 23.79 18.15 8.47 3.73 10.10 6.61 3.64 5.29 4.25 26 E5_Db KnownBoundary 0 17.78 25.39 8.99 20.64 3.48 2.21 10.11 5.46 3.36 3.33 9.42 24.91 20.45 11.89 33.62 15.64 3.65 0.00 0.00 3.07 5.68 9.12 7.85 27 E5b_E6a KnownJunction 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 2.26 6.30 0.00 4.94 0.00 8.20 0.00 0.00 0.00 0.00 0.00 2.88 0.00 28 ER5c ExonRegion 0 11.36 13.91 8.18 13.56 12.67 14.99 14.67 6.65 4.21 8.10 6.03 18.79 15.20 14.67 22.64 15.63 11.64 2.15 14.11 11.45 5.09 8.23 9.38 29 ER6a ExonRegion 0 10.88 10.10 6.59 8.30 9.87 14.99 7.57 1.77 7.61 3.63 32.60 36.66 34.77 40.65 22.00 35.65 28.70 7.10 4.84 9.50 5.29 6.52 8.80 30 E6_Da NovelBoundary 1 13.26 17.96 5.80 4.86 0.00 6.30 8.88 0.00 12.62 0.00 31.80 71.87 32.30 45.97 0.00 24.18 32.07 3.65 0.00 3.00 5.13 5.94 0.00 31 E6b_E7a KnownJunction 0 19.71 13.75 7.98 8.19 3.40 0.00 5.87 0.00 10.94 5.67 38.90 112.09 32.63 51.21 14.09 19.31 45.91 4.68 0.00 5.69 13.90 5.33 4.35 32 ER6b ExonRegion 1 11.96 14.24 7.72 7.02 1.20 1.65 8.14 0.00 12.66 4.82 40.78 96.55 33.06 49.45 12.91 22.59 36.31 5.08 0.00 5.00 10.03 5.94 2.94 33 ER7a ExonRegion 1 3.97 7.13 3.93 8.79 10.00 9.38 8.86 1.27 9.06 5.48 27.57 58.47 36.23 48.26 17.21 18.79 34.83 7.79 7.87 9.17 14.41 6.99 2.73 34 E7a_E8a KnownJunction 1 7.19 8.02 0.00 5.93 11.97 24.42 16.96 1.77 10.79 4.78 19.43 64.07 32.14 65.10 0.00 17.00 39.64 9.29 8.85 2.36 16.74 2.76 0.00 35 E8_Aa NovelBoundary 0 27.93 0.00 7.01 11.55 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 6.82 27.19 69.10 28.28 4.49 0.00 0.00 0.00 0.00 0.00 0.00 36 ER8a ExonRegion 1 5.44 1.45 2.94 3.47 8.41 24.89 8.44 0.69 9.03 7.01 28.17 66.67 32.43 46.91 13.68 28.70 44.42 12.09 9.74 2.49 19.08 6.31 0.00 37 E8a_E9a KnownJunction 0 9.56 2.63 6.95 1.86 3.74 25.78 2.25 0.00 5.06 5.99 37.33 51.92 47.24 47.91 27.07 41.78 38.90 10.49 13.08 2.56 14.70 8.39 0.00 38 ER9a ExonRegion 0 3.95 5.50 4.11 5.69 2.70 16.67 11.57 3.15 5.80 9.47 36.33 55.05 34.13 52.67 30.93 36.36 41.97 5.10 6.23 7.88 14.74 6.83 2.18 39 E9_Da NovelBoundary 0 3.70 0.00 0.00 2.86 7.47 7.27 8.08 2.51 3.39 0.00 9.69 0.00 13.64 19.37 10.38 11.88 12.34 0.00 3.86 3.26 2.41 2.27 4.27 40 E9a_E10a KnownJunction 0 0.00 11.38 1.24 3.93 0.00 8.18 1.94 2.14 0.00 4.06 36.32 48.62 39.12 58.45 39.93 6.58 29.27 4.10 8.66 9.33 13.90 12.92 4.27 41 E10_Aa NovelBoundary 0 3.56 5.39 0.00 6.29 7.64 14.48 12.81 0.00 6.74 6.07 6.79 6.30 19.80 12.13 0.00 7.69 3.65 2.40 0.00 2.56 0.00 0.00 7.09 42 ER10a ExonRegion 0 3.45 12.76 2.77 5.30 1.68 8.40 14.48 3.88 1.91 5.05 30.46 35.40 43.87 62.58 51.75 37.39 38.33 12.61 5.96 3.57 10.27 10.75 5.49 43 E10_Da NovelBoundary 0 0.00 0.00 0.00 7.69 3.82 2.78 8.21 2.14 0.00 2.69 4.74 20.26 39.12 14.24 0.00 3.50 16.92 7.92 3.58 0.00 5.25 0.00 8.71 44 E10a_E11a KnownJunction 0 0.00 16.18 3.67 3.80 4.33 18.63 16.91 6.57 3.18 4.38 23.85 13.95 40.58 52.33 49.94 53.75 34.41 14.76 9.22 6.46 5.75 11.33 0.00 45 I10 Intron 0 4.74 3.25 2.04 4.87 1.28 9.09 6.35 1.65 3.24 1.91 5.87 13.48 17.07 8.13 7.20 9.03 7.38 1.77 4.58 2.72 1.76 2.66 4.23 46 I10_SR1 SilentIntronRegion 0 4.79 3.06 2.83 6.31 1.58 9.28 6.21 0.92 3.30 0.85 9.93 10.93 22.22 9.22 8.73 9.49 9.74 3.62 7.17 3.76 2.18 3.24 5.42 47 I10_AR2 ActiveIntronRegion 0 2.12 7.46 3.68 4.32 2.68 13.75 3.97 1.73 2.88 1.91 4.83 36.08 22.67 6.77 0.48 2.97 9.90 5.54 3.19 4.26 0.00 0.00 0.00 48 I10_SR2 SilentIntronRegion 0 6.26 3.98 1.25 4.86 1.47 10.64 7.72 2.20 3.82 3.11 5.23 18.67 16.43 8.58 7.26 10.07 8.22 1.00 3.92 2.90 2.04 2.71 4.77 49 E11_Aa NovelBoundary 0 0.00 2.76 1.48 5.03 0.00 10.90 5.65 4.81 7.55 2.74 10.06 32.11 35.71 7.42 4.82 4.19 8.70 0.00 4.80 0.00 0.00 0.00 15.71 50 ER11a ExonRegion 0 3.91 9.90 3.36 4.18 10.88 30.30 15.25 5.45 3.62 5.56 31.14 30.21 35.69 49.32 37.53 32.11 29.06 9.00 10.39 5.50 9.25 9.74 0.32 51 E11_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 1.50 0.00 0.00 6.82 0.00 0.00 3.59 12.44 0.00 0.00 0.00 0.00 0.00 0.00 52 E11a_E12a KnownJunction 0 10.89 6.45 3.16 3.16 7.13 48.61 16.61 4.27 5.76 9.86 42.12 55.37 34.09 41.03 32.88 22.05 24.87 3.94 3.58 5.18 14.09 11.94 0.00 53 ER12a ExonRegion 0 2.44 6.41 5.30 5.68 3.21 21.70 16.09 4.81 4.90 9.88 31.43 45.96 30.81 44.93 43.16 28.81 36.51 7.42 2.21 8.67 9.49 6.35 4.88 54 E12a_E13a KnownJunction 0 0.00 15.72 7.13 7.19 11.29 23.68 27.07 6.28 3.99 13.43 33.75 56.42 47.24 55.45 66.75 46.65 29.64 9.20 9.22 18.92 11.00 8.39 8.71 55 ER13a ExonRegion 0 12.53 15.02 9.42 9.49 10.24 17.70 11.52 5.00 5.24 9.51 40.66 59.76 49.90 82.89 50.20 38.84 30.13 7.67 4.33 13.01 12.91 9.06 8.13 56 E13a_E14a KnownJunction 0 6.37 10.06 9.79 11.39 4.07 10.73 8.21 4.11 1.65 7.55 33.11 18.01 49.19 42.79 33.87 21.28 23.09 2.57 9.41 2.49 5.50 9.25 7.85 57 ER14a ExonRegion 0 25.10 12.70 10.30 10.73 9.79 22.51 17.22 7.33 6.77 9.84 46.65 69.99 58.77 58.74 48.49 29.84 31.20 5.03 6.14 14.83 7.89 8.43 2.73 58 E14a_E15a KnownJunction 0 17.26 5.46 9.28 4.13 17.40 30.32 18.42 6.98 8.83 5.05 44.75 104.88 104.54 76.76 22.87 26.40 8.32 4.97 4.80 9.20 8.83 5.88 0.00 59 ER15a ExonRegion 0 19.64 10.42 11.74 14.73 14.13 23.74 15.12 6.46 4.70 6.30 41.24 81.35 55.95 66.39 47.34 26.44 29.13 7.78 6.43 6.87 13.22 4.06 9.27 60 E15a_E16a KnownJunction 0 24.52 22.96 13.63 22.61 3.82 18.00 13.34 4.64 1.62 4.19 41.91 80.28 34.41 66.34 57.36 40.33 60.68 9.95 0.00 5.37 8.65 0.00 15.19 61 ER16a ExonRegion 0 10.12 13.84 10.82 19.93 3.48 15.93 10.45 1.91 7.14 10.47 38.43 89.12 67.37 37.25 52.64 31.07 30.44 5.21 14.52 10.28 4.52 4.98 8.24 62 E16a_E17a KnownJunction 0 7.48 20.39 20.52 12.62 11.63 32.54 11.53 0.00 7.32 17.84 45.75 93.03 57.30 40.08 47.47 34.26 15.61 6.59 17.13 5.88 8.59 5.39 3.33 63 ER17a ExonRegion 0 11.91 18.52 16.85 15.41 15.43 31.50 17.59 4.91 8.71 19.87 40.76 80.48 82.83 68.36 51.86 28.45 34.25 13.79 20.42 12.12 9.01 10.23 4.35 64 E17a_E18a KnownJunction 1 16.67 20.13 17.86 20.41 11.29 27.31 17.58 6.45 8.01 13.48 14.95 101.43 75.16 90.82 62.67 19.74 33.85 16.00 12.24 21.92 5.44 0.00 11.95 65 ER18a ExonRegion 0 23.59 23.20 14.36 21.82 11.04 29.19 18.96 2.31 10.08 20.78 33.19 81.56 78.74 76.43 71.77 33.78 35.00 9.40 16.33 21.24 12.79 8.07 8.09 66 E18a_E19a KnownJunction 0 41.27 18.62 6.74 14.92 11.88 43.90 29.32 1.89 12.27 16.52 24.16 58.82 74.83 84.29 33.87 52.81 42.45 12.52 14.02 27.61 18.41 10.72 7.34 67 E19_Aa NovelBoundary 0 11.11 10.06 2.93 7.23 8.57 5.68 4.24 5.09 1.77 5.37 0.00 0.00 0.00 7.30 21.88 8.29 0.00 2.45 0.00 2.75 0.00 0.00 0.00 68 ER19a ExonRegion 0 27.46 18.05 9.13 11.25 7.82 18.09 13.23 7.23 8.97 10.80 27.91 59.16 44.54 87.41 67.07 35.19 45.89 18.01 17.17 18.32 25.27 9.67 9.24 69 E19a_E20a KnownJunction 0 30.38 12.23 4.73 12.49 7.98 24.42 10.33 3.98 7.96 5.78 37.22 49.67 32.63 71.46 61.69 37.08 42.08 21.02 9.41 9.52 30.15 8.82 7.77 70 ER20a ExonRegion 0 26.10 25.60 7.61 8.79 14.23 30.28 17.69 5.03 5.62 8.10 32.82 42.95 44.56 74.25 50.05 48.27 44.33 13.78 8.47 11.28 25.54 7.83 9.37 71 E20_Da NovelBoundary 0 3.11 3.29 5.50 5.46 3.40 2.78 0.00 2.01 4.22 3.09 17.48 5.55 13.64 7.30 4.45 4.19 9.54 2.03 0.00 13.74 0.00 2.45 7.60 72 E20a_E21a KnownJunction 0 23.78 41.90 5.35 4.66 23.01 44.63 48.84 8.34 7.90 12.54 54.59 41.86 75.32 44.85 55.01 36.49 50.12 8.91 13.27 9.27 9.39 8.82 4.01 73 I20 Intron 0 27.09 10.45 8.18 10.20 19.89 9.47 9.35 6.58 6.29 5.25 6.77 10.90 7.19 7.39 13.39 8.19 8.81 1.72 2.01 4.89 0.70 7.36 2.28 74 I20_AR1 ActiveIntronRegion 1 54.30 24.08 17.10 23.21 37.86 16.79 19.77 17.08 13.16 11.59 11.14 19.96 9.93 10.47 26.60 12.31 20.05 2.44 2.47 6.33 0.29 15.15 2.66 75 I20_SR2 SilentIntronRegion 0 62.79 22.24 15.41 18.28 40.15 19.01 14.88 7.61 8.59 8.13 12.11 22.64 15.12 11.74 22.47 11.27 11.40 2.70 3.84 5.50 1.90 10.41 5.57 76 E21_Aa NovelBoundary 0 69.94 17.43 16.29 28.57 48.56 54.06 24.91 16.72 16.06 3.98 25.11 19.06 41.56 13.36 27.44 20.42 20.48 9.20 3.95 9.01 0.00 12.06 3.33 77 ER21a ExonRegion 0 59.44 30.31 22.23 30.57 52.23 36.42 37.34 21.68 23.11 17.15 50.18 46.24 87.94 75.10 95.01 56.83 55.64 13.92 13.88 15.91 14.73 22.30 9.34 78 E21_Da KnownBoundary 1 61.49 28.35 40.95 63.99 50.51 32.65 31.71 26.21 26.65 20.47 31.48 37.06 140.74 74.40 110.39 48.28 40.30 6.18 0.00 26.21 11.00 39.80 0.00 79 ER21b ExonRegion 1 54.58 32.77 24.58 33.11 42.78 44.62 38.56 21.34 17.60 16.53 33.92 64.74 91.20 51.97 74.10 38.28 29.36 6.74 12.06 19.76 4.82 29.38 7.02 80 IG49 Intergenic 0 27.01 26.12 12.82 20.72 33.93 28.70 25.70 13.07 11.75 10.77 21.00 57.60 49.42 31.88 47.44 16.90 18.95 3.32 5.78 10.91 2.71 15.47 3.53 81 IG49_AR3 ActiveIntergenicRegion 0 26.53 15.21 12.04 21.14 33.08 38.05 30.52 13.55 18.61 12.95 27.83 71.43 84.31 41.57 50.66 18.45 15.54 2.93 6.06 11.27 2.61 18.75 5.28 82 IG49_SR2 SilentIntergenicRegion 0 23.23 14.08 9.13 9.97 42.88 32.34 22.97 11.47 7.09 7.87 17.62 67.61 54.64 42.05 36.85 9.76 18.62 4.67 5.97 4.80 3.76 12.97 3.67 83 IG49_AR2 ActiveIntergenicRegion 0 28.66 30.40 13.87 22.64 35.00 28.00 26.41 13.86 11.59 11.24 20.73 57.24 44.68 30.52 50.18 17.35 19.27 3.37 5.71 11.83 2.48 15.76 3.31 84 IG49_AR1 ActiveIntergenicRegion 0 5.33 2.56 2.30 1.28 5.05 6.91 2.50 0.00 0.00 0.00 9.74 6.73 17.02 11.17 5.16 14.97 24.94 1.73 6.02 2.68 5.55 3.94 1.85