Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 REL Gene 0 43.06 19.73 19.31 23.74 38.23 28.84 55.87 21.50 22.05 15.89 164.33 148.80 110.63 112.17 54.32 118.62 154.12 25.02 15.33 34.52 18.49 62.16 43.24 2 295025 Transcript 0 25.09 11.01 4.27 4.67 14.70 13.20 21.68 7.77 7.77 5.80 41.00 34.67 29.50 32.62 30.47 36.46 44.15 6.66 6.47 11.14 4.24 20.58 12.19 3 394479 Transcript 0 9.93 13.29 4.44 20.28 17.32 11.58 16.47 6.94 28.56 14.53 202.05 249.23 209.56 100.07 37.58 194.56 146.33 37.23 11.95 9.65 15.69 58.48 62.32 4 423882 Transcript 0 2.96 2.85 0.74 3.54 3.21 5.50 6.36 1.73 5.43 2.75 40.59 51.09 43.15 25.01 8.12 36.85 34.99 7.39 2.55 5.11 3.09 12.92 12.92 5 ER1a ExonRegion 0 16.56 5.07 3.03 1.25 11.77 15.96 24.46 1.35 0.76 2.61 22.63 2.13 0.00 10.14 12.84 37.50 35.75 6.33 1.90 3.82 4.73 2.59 13.75 6 E1_Ab KnownBoundary 0 42.01 8.55 10.59 1.83 39.56 36.51 32.99 7.06 3.53 9.37 44.43 6.30 0.00 29.90 17.80 98.78 71.25 28.89 15.15 11.19 7.60 10.29 58.30 7 ER1b ExonRegion 1 9.99 4.47 10.69 5.93 6.32 8.74 9.88 9.82 9.62 6.45 73.25 6.63 20.38 46.76 24.59 74.06 87.58 26.33 12.28 14.58 20.22 15.70 32.79 8 E1a_E2a KnownJunction 1 6.74 0.00 15.85 18.01 10.36 18.57 15.15 15.12 23.70 12.81 121.50 6.30 19.48 68.69 45.99 175.77 109.58 55.26 34.45 5.75 28.11 42.99 115.67 9 I1 Intron 0 11.67 2.56 11.24 4.18 9.04 1.79 10.17 4.62 4.79 1.01 11.32 14.62 14.96 2.45 8.42 12.00 13.48 0.70 1.39 2.44 3.07 5.60 12.60 10 I1_AR1 ActiveIntronRegion 0 6.08 0.00 4.44 1.36 0.00 0.00 3.97 0.65 0.00 0.00 6.52 0.00 5.86 2.44 2.90 4.09 0.00 0.00 0.00 4.26 1.38 2.08 10.65 11 I1_AR2 ActiveIntronRegion 0 10.48 3.55 18.11 4.18 6.73 2.22 10.35 5.56 6.60 1.46 18.38 4.77 7.57 3.69 10.17 24.63 19.55 1.89 0.58 2.56 14.27 4.49 30.85 12 I1_SR2 SilentIntronRegion 0 23.48 3.63 15.37 4.41 12.18 2.45 10.32 4.17 4.23 1.14 13.51 6.89 11.10 2.94 9.68 13.42 17.01 1.53 2.70 2.03 5.04 4.31 15.98 13 I1_AR3 ActiveIntronRegion 0 20.44 2.19 12.85 7.42 16.13 1.38 8.55 3.30 4.55 0.35 7.19 12.45 11.73 1.56 6.17 6.46 6.46 1.21 0.94 1.04 0.15 5.63 7.95 14 I1_SR3 SilentIntronRegion 0 5.89 6.55 22.97 10.39 11.06 1.48 8.70 5.35 7.64 0.78 5.14 21.51 22.78 2.38 7.70 6.37 3.84 0.12 1.71 2.84 0.92 7.18 5.55 15 I1_SR4 SilentIntronRegion 0 8.41 2.14 9.20 3.55 7.70 1.69 10.41 4.79 4.72 1.04 11.04 17.15 16.49 2.35 8.32 11.63 13.47 0.39 1.21 2.67 2.20 5.95 11.30 16 E2_Aa NovelBoundary 0 22.97 15.52 8.10 3.30 15.28 0.00 12.37 18.28 10.65 0.00 11.53 12.30 21.75 4.94 14.46 34.44 17.39 1.70 0.00 6.52 10.75 5.51 10.84 17 ER2a ExonRegion 1 22.57 13.10 34.10 28.04 42.87 38.77 64.40 22.82 31.05 13.03 171.22 48.32 84.32 124.42 50.19 144.30 173.24 42.08 16.75 31.89 27.72 39.76 80.03 18 E2a_E3a KnownJunction 1 27.86 23.22 24.01 29.07 11.71 31.12 29.81 22.59 36.23 14.75 176.26 42.61 97.07 93.18 53.28 61.27 123.52 17.95 0.00 29.47 10.87 40.23 25.44 19 E3_Aa NovelBoundary 0 13.85 3.35 14.49 9.26 8.15 0.00 11.13 10.60 8.54 0.00 2.58 5.85 6.17 0.00 6.06 0.00 9.54 0.00 0.00 2.88 2.84 0.00 7.77 20 ER3a ExonRegion 0 53.04 20.23 35.50 38.60 53.44 15.24 50.99 29.24 34.64 16.66 225.47 133.63 119.36 117.53 51.95 99.56 169.30 20.31 8.12 30.14 13.77 59.69 57.55 21 E3_Da NovelBoundary 0 3.63 12.43 33.53 15.12 12.48 0.00 5.61 24.60 12.21 0.00 4.84 13.35 6.33 2.47 4.70 8.03 7.76 1.66 11.67 5.94 2.47 2.69 4.10 22 E3a_E4a KnownJunction 1 46.75 6.05 26.94 37.16 8.66 14.99 53.57 3.61 23.73 10.96 231.69 188.16 190.90 117.84 39.19 82.37 221.41 16.71 4.80 46.53 9.08 46.60 38.93 23 I3 Intron 0 11.22 2.56 11.07 3.48 6.74 0.92 9.32 9.43 5.91 0.98 4.37 6.05 7.90 1.41 5.67 7.77 6.20 0.85 1.29 2.43 1.31 3.12 12.57 24 I3_SR1 SilentIntronRegion 0 11.23 2.56 11.08 3.48 6.75 0.92 9.33 9.44 5.91 0.98 4.37 6.05 7.90 1.41 5.68 7.78 6.21 0.85 1.29 2.43 1.31 3.12 12.58 25 E4_Aa NovelBoundary 0 3.48 3.35 4.38 2.06 12.82 0.00 8.08 4.60 13.25 1.32 5.37 0.00 20.29 0.00 15.33 12.39 13.46 0.00 0.00 3.20 0.00 0.00 19.38 26 ER4a ExonRegion 0 30.25 8.33 26.19 34.43 31.32 25.95 84.37 16.68 22.26 13.11 277.81 203.53 191.93 109.49 38.54 106.58 203.33 18.50 10.08 37.63 8.67 79.56 44.91 27 E4_Da NovelBoundary 0 0.00 0.00 8.57 10.12 4.16 0.00 8.74 11.30 14.21 0.00 7.21 18.91 0.00 9.36 19.66 24.95 8.70 2.16 0.00 0.00 0.00 8.88 28.43 28 E4a_E5a KnownJunction 0 37.78 5.53 27.85 27.04 25.04 21.64 97.78 16.27 23.67 5.48 285.28 238.28 242.35 130.73 40.18 113.05 219.92 18.03 23.62 36.62 9.27 83.22 26.80 29 I4 Intron 0 9.76 2.61 8.09 5.34 6.27 1.55 6.28 5.72 6.01 0.93 5.26 4.76 9.12 0.95 4.97 7.10 7.93 0.72 0.34 1.35 1.00 3.12 11.14 30 I4_SR1 SilentIntronRegion 0 9.76 2.61 8.09 5.34 6.27 1.55 6.28 5.72 6.01 0.93 5.26 4.76 9.12 0.95 4.98 7.10 7.93 0.72 0.34 1.35 1.00 3.12 11.14 31 I4_AR1 ActiveIntronRegion 0 7.59 0.94 3.98 3.25 4.66 1.02 5.33 5.51 4.62 0.79 2.68 4.28 4.08 1.39 4.04 3.67 4.76 1.02 0.29 1.97 0.00 2.97 10.53 32 ER5a ExonRegion 0 25.76 21.50 29.92 37.00 28.09 25.45 53.22 18.63 25.81 13.85 247.70 250.68 174.03 139.94 43.44 125.93 232.09 22.12 17.53 39.05 15.04 72.32 41.88 33 E5a_E6a KnownJunction 0 10.96 25.98 18.12 37.36 24.02 31.12 67.26 18.77 23.96 17.16 221.90 273.99 220.44 146.57 62.92 130.99 233.57 33.00 7.72 37.78 23.48 95.10 47.46 34 ER6a ExonRegion 0 32.88 16.66 21.22 31.20 23.67 21.13 65.77 20.96 21.31 23.04 219.03 301.00 195.91 129.90 44.76 122.51 217.07 29.44 5.86 36.33 18.74 59.73 36.08 35 E6a_E7a KnownJunction 0 31.64 17.30 10.64 18.75 21.39 27.20 69.82 26.12 20.57 21.44 256.22 292.75 170.77 144.21 47.35 108.35 221.79 15.88 16.57 44.61 27.49 35.21 45.84 36 E7_Aa NovelBoundary 0 28.82 0.00 0.00 1.56 6.79 4.83 11.97 6.24 4.92 0.00 12.95 32.86 12.01 14.07 0.00 7.78 11.59 0.00 0.00 10.99 5.75 5.57 7.77 37 ER7a ExonRegion 0 40.02 17.58 20.94 31.73 29.84 35.38 66.96 25.43 25.94 18.86 245.50 263.22 182.27 144.19 60.95 125.54 219.13 25.21 9.42 36.34 21.69 71.72 44.71 38 E7_Da NovelBoundary 1 0.00 9.01 4.94 13.02 3.31 2.78 0.00 5.54 1.74 1.26 0.00 6.30 8.28 4.94 33.87 6.58 13.46 2.07 0.00 5.56 2.35 11.02 3.59 39 E7a_E8a KnownJunction 0 15.34 19.34 25.31 17.71 35.14 37.25 68.94 19.96 25.75 13.05 208.26 294.25 155.35 160.93 58.47 167.31 231.14 12.27 8.38 45.83 10.87 51.19 66.16 40 E8_Aa NovelBoundary 0 0.00 6.58 7.30 8.36 23.77 5.34 31.84 6.65 7.35 1.67 4.63 24.91 6.49 4.94 9.39 0.00 11.69 1.74 0.00 3.26 0.00 7.84 3.59 41 ER8a ExonRegion 0 9.94 14.80 11.35 16.69 33.89 37.74 46.99 17.01 25.44 12.57 207.41 256.13 193.45 134.94 49.15 201.33 252.26 27.21 15.14 31.05 18.17 80.44 47.71 42 E8_Da NovelBoundary 0 18.00 3.35 7.81 14.78 11.29 4.94 20.76 2.55 5.93 7.79 15.58 31.21 32.95 5.12 0.00 14.95 21.41 2.57 0.00 0.00 0.00 31.11 18.78 43 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 8.69 0.00 2.22 3.47 0.00 4.53 0.00 13.15 0.00 13.97 0.00 4.77 0.00 0.00 3.26 0.00 0.00 0.00 44 E8a_E10b KnownJunction 0 9.93 13.29 4.44 20.28 17.32 11.58 16.47 6.94 28.56 14.53 202.05 249.23 209.56 100.07 37.58 194.56 146.33 37.23 11.95 9.65 15.69 58.48 62.32 45 E8a_E11a NovelJunction 0 0.00 2.76 0.00 1.37 0.00 0.00 0.00 0.00 1.39 1.37 16.74 0.00 6.82 2.47 0.00 16.83 25.99 4.15 0.00 11.06 0.00 6.25 3.50 46 E9_Aa NovelBoundary 0 753.24 507.34 629.07 731.68 632.85 560.02 783.18 722.62 691.86 711.47 298.29 266.04 264.27 179.41 293.59 613.86 589.25 767.88 561.33 770.39 449.99 326.50 552.30 47 ER9a ExonRegion 0 19.86 21.67 0.97 2.12 15.69 12.55 17.32 2.30 4.85 2.07 13.89 26.43 19.98 26.27 46.48 28.92 27.61 8.12 8.89 17.53 3.54 8.88 6.76 48 E9_Da NovelBoundary 1 468.08 280.54 309.13 281.42 327.08 191.03 389.56 210.83 255.93 207.59 171.41 134.59 140.41 82.47 184.19 291.97 216.83 299.33 235.87 336.72 147.34 101.83 360.74 49 E9a_E10b KnownJunction 0 3.41 0.00 1.30 0.00 0.00 0.00 4.06 2.30 6.19 1.53 7.16 12.60 12.99 23.72 10.75 19.40 18.14 3.98 4.05 0.00 0.00 0.00 4.01 50 ER10a ExonRegion 0 2.96 2.85 0.74 3.54 3.21 5.50 6.36 1.73 5.43 2.75 40.59 51.09 43.15 25.01 8.12 36.85 34.99 7.39 2.55 5.11 3.09 12.92 12.92 51 ER10b ExonRegion 0 28.60 15.10 5.48 14.55 26.17 30.18 39.25 11.46 21.60 12.63 203.21 229.08 136.56 150.14 59.73 214.17 185.72 31.85 13.30 33.70 24.18 74.00 60.59 52 E10_Da NovelBoundary 0 0.00 2.57 6.15 6.49 6.54 0.00 24.33 4.03 1.59 2.85 15.32 18.61 33.44 4.59 0.00 0.00 22.35 4.64 4.33 5.62 0.00 10.84 0.00 53 E10a_E11a KnownJunction 1 45.42 18.62 12.92 15.65 38.54 25.04 44.65 17.25 21.18 13.97 330.24 236.78 95.61 171.52 71.70 155.09 250.30 25.16 13.84 33.56 25.39 48.19 31.67 54 I10 Intron 0 5.90 4.69 2.21 9.36 11.36 7.67 11.89 5.32 2.46 1.66 7.39 17.27 15.84 5.95 5.68 9.74 7.60 1.17 1.16 3.23 0.67 16.56 7.12 55 I10_SR1 SilentIntronRegion 0 5.92 4.70 2.22 9.39 11.39 7.69 11.92 5.33 2.46 1.66 7.40 17.31 15.88 5.96 5.70 9.77 7.62 1.18 1.16 3.23 0.67 16.60 7.14 56 E11_Aa NovelBoundary 0 13.48 3.35 0.00 3.10 8.15 2.56 3.93 11.38 2.92 9.05 11.27 5.55 39.93 14.48 0.00 4.36 16.08 4.15 0.00 5.18 16.62 17.02 11.78 57 ER11a ExonRegion 0 43.06 19.21 18.72 23.94 46.46 34.04 61.57 21.13 21.85 15.32 162.08 160.17 112.54 128.99 59.76 137.84 157.12 27.53 16.81 39.35 21.43 66.52 45.35 58 E11_Da KnownBoundary 0 482.68 433.08 314.15 371.41 336.16 326.18 541.92 331.47 254.89 241.33 219.37 171.51 191.55 192.48 178.87 451.76 354.65 396.46 350.13 448.25 146.78 193.80 320.28 59 ER11b ExonRegion 0 87.39 97.72 57.47 77.20 72.38 46.72 101.00 69.67 54.49 56.90 119.22 108.75 75.44 111.13 100.22 130.22 109.38 89.57 78.23 125.21 48.11 65.19 75.51 60 E11_Db KnownBoundary 0 255.90 439.86 129.33 167.64 230.90 275.01 346.85 130.78 98.78 103.34 121.40 86.73 65.42 43.79 51.67 282.66 249.65 132.19 181.84 299.64 186.94 138.51 283.75 61 ER11c ExonRegion 0 85.60 28.32 16.07 19.97 46.03 28.79 62.56 30.66 23.55 22.80 156.79 132.20 101.37 102.98 68.31 96.51 134.48 14.87 17.52 31.08 12.96 91.43 36.43 62 IG47 Intergenic 0 61.85 39.40 23.77 40.01 66.03 51.83 62.57 28.57 23.70 21.71 106.14 129.06 101.37 73.49 54.71 69.57 84.72 10.91 11.91 24.07 8.00 75.67 23.98 63 IG47_SR1 SilentIntergenicRegion 0 1.57 7.67 0.98 3.89 20.03 8.54 31.78 3.11 9.14 8.09 29.66 71.62 36.18 43.90 9.37 22.33 13.58 6.44 1.91 16.66 0.00 35.12 6.46 64 IG47_AR1 ActiveIntergenicRegion 0 12.01 14.67 7.64 18.28 38.35 36.73 65.08 17.71 18.97 14.19 92.12 174.80 95.22 74.67 24.64 52.73 71.57 5.95 6.48 27.29 3.81 72.54 19.68 65 IG47_SR2 SilentIntergenicRegion 0 15.42 10.46 2.35 6.09 26.38 25.94 35.76 6.64 5.52 4.39 42.25 93.76 82.80 48.89 12.19 30.57 33.95 1.97 5.46 12.77 0.94 35.72 5.03 66 IG47_AR2 ActiveIntergenicRegion 0 78.89 35.37 17.04 35.15 57.57 55.43 74.35 30.46 28.58 24.92 184.73 167.71 167.11 113.21 63.25 123.22 158.86 18.41 20.30 33.80 16.84 102.25 44.03 67 IG47_SR3 SilentIntergenicRegion 0 34.91 31.19 28.01 33.49 115.94 58.36 61.43 14.82 21.17 19.01 63.00 39.65 54.48 99.38 69.43 55.84 46.83 7.78 9.77 13.87 9.30 74.30 20.27 68 IG47_AR3 ActiveIntergenicRegion 0 116.17 78.45 50.47 77.19 131.24 86.12 79.55 50.96 30.89 32.53 97.13 137.46 93.74 64.10 98.94 54.54 50.31 8.06 6.17 20.99 2.63 99.92 14.60 69 IG47_SR4 SilentIntergenicRegion 0 20.12 18.24 8.71 22.47 25.98 29.19 15.28 7.47 3.82 7.41 10.73 26.77 21.07 9.58 10.28 12.42 11.82 2.42 0.76 9.78 1.57 6.85 2.51 70 IG47_AR4 ActiveIntergenicRegion 0 29.31 28.97 22.27 30.09 25.62 20.48 27.16 14.97 17.20 14.80 26.65 30.81 25.34 25.91 23.18 32.69 43.45 10.74 15.43 12.84 6.91 14.84 13.89