Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KRTCAP3 Gene 0 9.50 7.11 24.46 20.18 11.03 17.75 8.23 14.60 9.48 14.84 5.41 1.33 1.74 6.02 5.12 8.09 4.49 14.06 10.43 13.07 5.11 3.99 7.78 2 288873 Transcript 0 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 3 453171 Transcript 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 407293 Transcript 0 1.45 2.38 5.37 3.57 0.02 2.79 2.68 1.90 2.09 5.19 0.01 1.07 0.00 1.99 1.84 1.29 2.09 5.61 4.71 7.53 1.68 0.00 1.78 5 464699 Transcript 0 2.46 1.57 10.59 4.69 1.56 16.46 0.77 4.53 2.56 5.17 3.40 0.05 0.00 1.27 8.45 1.20 4.09 2.50 2.10 1.32 1.42 3.85 4.13 6 494572 Transcript 0 20.61 11.06 33.64 26.72 17.94 36.13 10.52 24.14 12.00 24.08 9.91 1.45 1.58 6.59 4.43 15.95 9.69 23.64 12.21 18.43 10.15 7.25 17.43 7 452499 Transcript 0 6.63 6.95 15.61 16.16 8.39 11.23 6.03 3.32 4.42 2.67 0.55 0.00 1.22 2.11 1.22 0.85 0.00 2.62 5.45 2.73 1.57 1.79 3.35 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 9 ER1b ExonRegion 0 5.64 0.00 0.00 0.00 0.13 0.04 0.00 0.00 0.00 0.00 0.05 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 10 E1a_E2b KnownJunction 0 14.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E2d KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 1.45 2.38 5.37 3.57 0.02 2.79 2.68 1.90 2.09 5.19 0.01 1.07 0.00 1.99 1.84 1.29 2.09 5.61 4.71 7.53 1.68 0.00 1.78 13 E2_Ab KnownBoundary 0 9.48 5.53 13.39 3.53 3.99 0.00 9.54 6.65 6.80 7.76 0.00 0.00 0.00 0.00 4.45 0.00 8.88 11.03 0.00 10.87 0.00 0.00 4.35 14 ER2b ExonRegion 0 4.62 3.69 16.05 8.66 3.24 4.08 4.56 8.84 9.14 12.23 2.71 0.08 0.00 4.45 2.39 7.86 2.37 17.63 3.09 9.13 1.35 0.64 4.88 15 E2_Ac NovelBoundary 0 3.19 3.16 20.11 12.82 3.99 10.90 1.81 1.89 6.19 9.08 0.00 0.00 0.00 0.00 6.30 7.43 4.30 3.56 0.00 8.31 2.53 0.00 0.00 16 E2a_E2d KnownJunction 0 6.00 0.00 37.23 12.52 0.00 8.29 3.89 4.39 12.73 14.32 12.42 0.00 0.00 2.12 4.45 10.51 0.00 16.83 4.80 12.40 0.00 0.00 3.93 17 ER2c ExonRegion 0 4.59 0.11 30.29 8.78 1.34 6.32 3.02 4.71 11.87 13.00 8.38 0.96 0.00 3.07 4.67 7.10 0.37 9.55 3.19 11.58 0.00 1.16 4.08 18 ER2d ExonRegion 0 2.46 1.57 10.59 4.69 1.56 16.46 0.77 4.53 2.56 5.17 3.40 0.05 0.00 1.27 8.45 1.20 4.09 2.50 2.10 1.32 1.42 3.85 4.13 19 E2_Ad KnownBoundary 0 2.96 9.93 18.21 13.45 4.24 12.61 4.28 5.01 5.99 14.88 2.53 0.00 0.00 4.71 5.19 8.54 3.46 11.11 4.14 2.88 0.00 0.00 8.11 20 ER2e ExonRegion 0 9.18 6.41 40.37 15.68 5.17 10.66 4.44 15.79 14.80 22.06 13.20 8.44 2.23 11.34 4.82 13.35 3.47 19.70 8.10 18.75 3.03 3.78 14.09 21 E2_Db NovelBoundary 0 0.00 9.60 6.39 6.76 8.32 5.22 2.25 7.85 1.74 5.83 0.00 0.00 0.00 5.24 10.75 3.59 0.00 17.33 4.14 0.00 5.00 0.00 3.33 22 E2b_E3a KnownJunction 0 2.96 12.63 37.76 13.98 12.14 0.00 2.21 21.81 13.60 19.45 7.42 0.00 6.82 4.94 4.45 11.45 3.74 27.53 22.31 24.03 5.62 6.25 3.67 23 ER3a ExonRegion 0 6.00 6.43 35.83 21.85 11.34 18.50 4.63 24.22 15.16 29.20 5.03 3.23 1.45 9.16 9.57 12.92 4.23 28.31 19.27 21.76 4.98 4.31 10.04 24 E3_Da NovelBoundary 0 3.78 0.00 14.99 8.66 7.47 10.79 6.76 7.60 5.58 4.73 2.37 7.20 0.00 0.00 8.90 0.00 4.30 12.35 0.00 15.66 0.00 0.00 4.35 25 E3a_E4a KnownJunction 0 17.41 6.12 34.59 34.79 26.40 22.43 8.13 28.96 18.75 18.53 2.00 0.00 0.00 2.30 8.90 11.79 0.00 9.29 28.33 29.79 11.68 10.84 4.35 26 ER3b ExonRegion 0 17.01 5.16 32.85 30.04 14.82 18.34 5.55 24.53 20.14 22.23 0.52 0.00 0.00 5.43 3.57 12.46 2.16 24.52 20.21 24.71 10.68 10.10 6.66 27 E4_Aa NovelBoundary 0 0.00 2.50 1.83 3.70 8.15 4.88 0.00 2.55 4.83 6.04 4.63 6.30 0.00 4.83 0.00 3.33 0.00 17.08 4.52 5.31 2.53 0.00 7.34 28 ER4a ExonRegion 0 13.66 3.88 34.35 29.96 36.05 23.14 9.92 20.18 13.65 22.60 7.38 0.00 3.58 9.89 13.13 6.59 6.00 17.13 30.64 27.58 13.78 10.19 7.21 29 E4_Ab KnownBoundary 0 21.34 9.60 42.70 27.47 12.65 9.77 5.87 15.03 9.90 32.29 9.11 0.00 0.00 9.83 13.47 4.19 9.07 25.37 17.41 20.26 17.67 0.00 8.45 30 ER4b ExonRegion 0 12.41 8.64 17.78 18.08 11.41 20.77 4.55 14.91 12.27 14.47 5.85 0.27 4.63 8.22 13.31 9.85 2.72 16.47 12.62 16.41 8.48 4.56 7.34 31 E4_Da NovelBoundary 0 7.19 2.89 34.30 17.28 0.00 8.01 2.21 12.40 3.76 21.79 5.00 0.00 0.00 11.89 6.18 12.13 4.77 14.76 12.71 12.34 3.15 7.72 12.63 32 E4a_E5a KnownJunction 0 0.00 0.00 9.46 17.01 12.31 2.78 0.00 10.02 5.21 3.84 0.00 0.00 0.00 4.83 10.75 7.60 4.39 3.86 14.40 5.69 2.47 5.88 0.00 33 E5_Aa NovelBoundary 0 30.60 14.21 45.92 31.00 21.31 39.41 8.21 28.38 13.89 22.70 2.53 6.15 6.49 17.48 17.80 12.39 4.39 31.59 22.31 32.92 3.03 0.00 28.51 34 ER5a ExonRegion 0 14.89 14.67 41.79 45.14 24.91 26.32 24.78 34.05 13.26 20.75 18.49 1.76 3.69 10.91 6.73 17.75 14.23 14.37 13.87 25.17 12.17 9.35 13.41 35 E5_Da KnownBoundary 0 39.86 12.43 54.82 35.43 41.09 47.30 25.61 42.02 9.35 40.13 16.85 0.00 0.00 16.54 4.45 16.58 8.23 28.81 16.75 23.78 14.46 3.06 22.79 36 E5a_E5b KnownJunction 0 0.00 0.00 1.48 8.39 0.00 2.44 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 3.65 2.57 4.61 0.00 3.15 0.00 3.50 37 E5a_E5c KnownJunction 0 0.00 0.00 0.00 3.56 0.00 0.00 1.77 6.98 0.00 0.00 0.00 0.00 0.00 6.53 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 38 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER5b ExonRegion 0 20.61 11.06 33.64 26.72 17.94 36.13 10.52 24.14 12.00 24.08 9.91 1.45 1.58 6.59 4.43 15.95 9.69 23.64 12.21 18.43 10.15 7.25 17.43 40 E5_Ab KnownBoundary 0 0.00 0.00 13.04 11.45 20.03 21.69 6.27 7.60 7.23 10.05 3.95 0.00 0.00 0.00 0.00 0.00 4.58 5.97 0.00 2.81 2.66 3.00 3.16 41 E5_Ac KnownBoundary 0 19.34 5.59 9.25 15.98 0.00 8.29 5.34 4.11 3.50 8.11 2.00 0.00 0.00 0.00 0.00 0.00 4.11 4.06 0.00 2.88 2.47 5.69 0.00 42 ER5c ExonRegion 0 16.23 8.81 22.47 35.89 15.16 35.45 16.77 23.62 10.70 22.17 7.73 0.00 0.00 3.25 2.90 4.95 9.90 16.63 7.43 11.35 8.81 8.33 6.85 43 ER5d ExonRegion 0 11.62 6.44 14.88 23.76 8.13 30.60 16.60 16.37 4.25 12.35 4.83 1.78 3.86 6.03 0.51 5.77 7.67 6.76 8.24 5.97 3.74 2.72 5.76 44 E5_Db NovelBoundary 0 21.93 2.43 7.86 5.39 15.79 2.10 12.37 6.65 2.40 7.23 0.00 0.00 0.00 0.00 0.00 3.93 6.92 12.31 10.92 2.36 2.66 0.00 22.45 45 ER5e ExonRegion 0 2.12 0.51 0.00 1.70 3.34 0.92 1.99 3.89 1.24 0.00 0.00 0.00 0.00 1.62 0.00 2.23 3.30 0.00 0.00 0.00 0.00 0.00 5.87 46 ER5f ExonRegion 0 2.12 0.00 0.00 0.00 1.34 0.00 0.00 0.86 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 2.94 47 I5_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 7.69 15.81 5.71 0.00 0.00 0.00 0.00 0.00 2.77 2.74 0.00 0.00 2.37 1.33 0.00 0.00 0.00 1.47 0.00 48 Ix Intron 0 6.29 8.06 25.32 25.14 6.62 19.07 7.21 3.83 4.56 3.39 3.83 1.77 3.82 4.35 6.68 10.30 0.00 9.10 17.35 8.43 7.62 10.32 5.82 49 Ix_AR1 ActiveIntronRegion 0 5.37 10.29 26.34 26.88 8.64 21.95 9.49 3.75 5.36 3.55 3.93 2.80 1.30 3.40 7.19 9.05 0.00 9.58 23.57 9.20 7.83 13.88 5.56 50 Ix_SR1 SilentIntronRegion 0 8.23 4.46 24.85 23.36 3.34 14.93 3.46 4.18 3.33 3.28 3.87 0.00 8.60 6.32 6.12 12.96 0.00 8.73 7.08 7.51 7.59 4.46 6.61 51 Ix Intron 0 30.97 18.04 17.82 54.04 9.49 59.37 11.74 11.42 9.79 9.85 4.29 1.92 3.43 5.76 5.60 35.59 11.71 11.81 48.03 12.27 4.89 15.71 19.54 52 Ix_SR1 SilentIntronRegion 0 31.50 18.36 18.13 54.99 9.66 60.42 11.95 11.61 9.97 10.03 4.34 1.95 3.49 5.86 5.70 36.17 11.92 12.02 48.88 12.48 4.97 15.99 19.85 53 E6_Aa NovelBoundary 0 137.88 81.56 232.72 280.62 105.77 284.04 64.21 70.57 83.88 83.92 21.79 6.00 13.64 43.85 60.94 41.78 22.81 93.35 75.01 65.13 85.50 33.49 61.63 54 ER6a ExonRegion 0 13.27 13.91 31.22 32.32 16.77 22.47 12.06 6.63 8.84 5.33 1.10 0.00 2.44 4.22 2.43 1.69 0.00 5.23 10.89 5.46 3.14 3.57 6.69