Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRIM1 Gene 0 73.33 19.67 32.55 35.14 58.76 13.26 15.87 28.26 34.21 26.69 2.02 4.20 31.59 214.65 81.19 40.19 103.37 0.28 0.82 4.78 109.31 124.33 65.19 2 280527 Transcript 0 30.05 12.09 28.39 32.56 33.23 13.55 12.90 28.55 49.59 33.74 2.35 3.20 38.48 361.44 92.57 56.91 162.38 0.33 0.08 5.19 193.57 148.51 109.12 3 426856 Transcript 0 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.00 4.34 4.35 2.11 0.00 0.00 36.02 5.19 6.84 25.53 0.00 0.00 0.00 35.65 13.78 0.00 4 428774 Transcript 0 2.94 0.99 3.53 0.16 0.57 0.00 1.51 1.00 0.43 0.13 0.29 1.01 1.95 1.34 4.93 1.37 2.57 0.00 1.90 0.96 0.51 0.56 1.34 5 473403 Transcript 0 0.39 0.00 0.45 0.00 0.00 0.00 0.65 0.65 0.00 0.00 0.00 0.00 0.42 1.49 0.26 0.00 0.83 0.00 0.00 0.27 0.00 0.00 0.37 6 497236 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 477491 Transcript 0 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.97 0.00 0.21 0.00 0.00 0.00 0.00 0.17 0.00 8 481321 Transcript 0 10.81 0.00 1.17 0.80 1.40 1.30 0.00 0.00 0.59 0.00 0.00 0.00 0.00 1.80 2.90 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 9 413985 Transcript 0 2.56 0.29 1.03 0.58 0.38 0.00 0.66 0.91 0.79 0.36 0.00 0.25 0.27 3.64 0.31 2.74 1.87 0.00 0.00 0.60 1.56 2.95 1.04 10 IG35_AR1 ActiveIntergenicRegion 0 1.21 0.26 2.98 1.03 3.22 0.47 0.59 2.29 0.93 2.17 0.00 0.00 0.00 11.30 14.35 1.09 4.40 0.00 0.00 0.00 4.19 2.38 1.30 11 IG35_SR2 SilentIntergenicRegion 0 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 1.21 1.50 0.42 0.00 0.00 16.83 1.34 9.11 14.45 0.00 0.00 0.47 13.00 1.37 12.21 12 ER1a ExonRegion 0 0.75 0.45 1.71 0.40 0.60 0.64 0.11 0.99 4.15 4.43 0.19 0.35 0.38 48.64 9.01 10.12 20.79 0.00 0.00 0.81 32.48 9.07 15.02 13 E1_Ab KnownBoundary 0 3.78 2.70 9.14 4.10 3.82 2.90 2.25 4.23 14.93 16.63 0.00 0.00 0.00 211.43 56.49 41.87 44.79 0.00 0.00 2.56 89.95 55.29 48.32 14 E1_Ac KnownBoundary 0 2.96 0.00 6.03 8.72 4.33 11.41 6.32 11.25 8.04 10.21 0.00 0.00 0.00 109.54 31.28 12.22 72.37 0.00 0.00 6.46 118.92 55.54 46.18 15 ER1b ExonRegion 0 2.57 2.03 7.66 6.86 4.78 7.20 4.54 6.54 14.29 13.93 0.00 0.00 0.00 176.97 48.39 31.95 56.70 0.00 0.00 4.18 117.58 63.62 39.12 16 ER1c ExonRegion 0 1.68 3.28 13.04 8.71 5.49 2.17 2.84 6.99 28.56 12.57 1.95 2.91 3.92 195.79 36.27 25.52 76.57 0.00 0.00 6.42 119.59 80.89 41.13 17 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1a_E5a KnownJunction 0 3.63 9.27 9.14 9.16 10.44 7.50 0.00 16.18 37.79 18.72 2.26 12.60 6.82 289.42 58.72 41.53 89.57 0.00 0.00 12.66 135.48 136.73 47.97 19 E1a_E6a KnownJunction 0 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.00 4.34 4.35 2.11 0.00 0.00 36.02 5.19 6.84 25.53 0.00 0.00 0.00 35.65 13.78 0.00 20 ER2a ExonRegion 0 0.80 0.00 0.69 0.00 0.00 0.00 1.00 1.95 0.00 0.00 0.00 0.00 1.25 4.19 0.77 0.00 2.49 0.00 0.00 0.80 0.00 0.00 1.11 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I2_SR4 SilentIntronRegion 0 4.30 0.00 23.12 0.28 2.76 0.00 0.47 3.00 0.08 2.14 0.00 0.00 3.15 2.49 7.08 0.77 2.50 0.00 0.00 0.55 0.00 0.68 2.43 23 I2_AR4 ActiveIntronRegion 0 4.18 0.35 14.19 0.27 0.92 0.00 0.46 2.36 3.12 0.24 0.33 0.00 0.67 2.46 7.27 1.54 4.55 0.00 0.00 0.37 0.00 0.00 2.74 24 E3_Aa NovelBoundary 0 14.30 0.00 34.59 0.00 3.57 0.00 0.00 0.00 2.95 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 25 ER3a ExonRegion 0 2.24 0.61 17.23 0.63 0.00 0.00 0.03 5.44 1.68 0.00 0.58 0.00 2.22 4.91 4.21 1.79 3.98 0.00 0.00 0.00 1.33 0.00 2.71 26 E3_Da KnownBoundary 0 6.52 0.00 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 13.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E3b KnownJunction 0 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER3b ExonRegion 0 5.89 1.98 7.05 0.31 1.15 0.00 3.01 2.00 0.85 0.26 0.59 2.03 3.89 2.68 9.87 2.75 5.15 0.00 3.81 1.91 1.02 1.11 2.68 30 E3_Ab KnownBoundary 0 318.20 590.03 75.37 73.82 256.54 398.80 405.86 89.29 85.71 91.12 134.67 157.85 189.60 134.97 305.46 354.10 263.02 132.69 253.28 398.08 215.36 139.12 286.22 31 ER3c ExonRegion 0 10.06 1.49 4.15 0.00 0.66 0.00 1.73 0.00 0.00 0.00 0.08 1.24 4.12 2.98 8.41 3.15 3.17 0.00 0.98 2.61 0.00 3.15 0.36 32 E3c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER3d ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.63 0.00 0.00 0.00 0.00 0.50 0.00 34 ER4a ExonRegion 0 1.46 0.00 1.35 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 1.74 1.59 0.00 2.09 0.00 0.00 0.00 0.00 0.00 1.99 35 ER4b ExonRegion 0 0.38 0.00 0.67 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5a ExonRegion 1 8.05 5.27 18.80 19.13 11.01 6.58 6.03 21.53 48.17 18.34 2.09 1.49 26.44 290.66 48.45 36.13 121.41 0.00 0.00 4.61 143.90 119.12 79.00 37 E5a_E6a KnownJunction 0 24.82 9.93 15.88 16.02 21.90 4.88 2.21 20.54 58.65 15.12 2.00 0.00 48.21 343.34 67.99 45.97 119.40 0.00 0.00 6.07 155.18 122.53 81.61 38 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 9.89 0.00 3.59 12.72 0.00 0.00 2.49 0.00 0.00 0.00 39 I5_AR1 ActiveIntronRegion 0 33.38 3.51 2.92 0.25 9.89 2.26 1.96 1.27 0.00 2.32 0.00 0.00 1.90 0.73 7.88 0.37 2.03 0.00 0.00 0.00 1.09 0.00 2.89 40 ER6a ExonRegion 1 9.82 5.16 18.99 17.88 19.89 9.32 8.47 15.03 38.41 22.23 2.09 2.39 39.53 288.87 46.72 41.95 121.13 0.00 0.00 3.88 169.41 116.65 79.87 41 E6a_E7a KnownJunction 0 9.33 5.33 26.23 26.27 11.88 2.67 4.24 13.92 44.39 26.27 5.32 12.45 71.59 346.99 70.21 50.59 96.77 0.00 0.00 0.00 149.62 95.52 69.06 42 ER7a ExonRegion 0 5.93 9.08 16.48 17.60 14.99 11.81 6.62 19.80 38.22 21.56 1.92 1.47 29.15 309.63 58.67 52.56 140.22 0.00 0.00 4.48 181.31 126.13 80.41 43 E7a_E8a KnownJunction 1 12.67 7.63 17.95 21.14 7.22 8.01 13.34 24.27 46.21 26.75 2.16 5.70 19.97 332.81 44.26 55.71 143.15 0.00 0.00 6.26 205.66 144.20 116.44 44 E7a_E9a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 1.50 1.67 2.00 0.00 0.00 6.95 4.45 0.00 14.03 0.00 0.00 0.00 11.86 0.00 3.24 45 ER8a ExonRegion 0 10.24 4.95 16.00 21.19 10.02 6.06 7.95 18.89 42.56 25.71 1.46 5.36 23.68 297.33 54.34 47.63 146.27 0.00 0.00 5.86 195.55 125.52 106.66 46 E8a_E9a KnownJunction 0 14.30 2.76 12.98 25.74 32.34 2.44 7.42 28.79 43.20 33.79 0.00 0.00 28.57 360.35 83.69 78.95 225.06 0.00 0.00 3.26 252.11 190.68 173.29 47 ER9a ExonRegion 0 14.30 5.19 16.58 25.54 18.80 11.13 7.84 24.26 43.51 35.23 1.84 2.29 26.24 334.90 71.85 63.13 188.73 0.00 0.00 6.06 223.43 155.13 116.10 48 E9a_E10a KnownJunction 0 35.86 18.81 21.29 41.82 20.54 10.90 28.40 34.13 52.31 57.03 4.63 0.00 13.64 440.29 83.44 81.52 227.30 0.00 0.00 8.95 268.67 172.31 109.18 49 ER10a ExonRegion 0 21.17 8.09 18.17 33.67 24.08 6.87 18.51 26.74 53.71 42.70 3.41 0.00 18.76 390.48 77.72 69.56 194.68 0.00 0.00 7.70 272.46 188.62 108.78 50 E10_Ab KnownBoundary 0 20.52 11.91 13.25 36.73 18.51 0.00 20.62 24.27 60.79 30.19 0.00 0.00 6.82 370.18 115.71 69.98 200.56 0.00 0.00 9.46 257.43 171.27 119.68 51 ER10b ExonRegion 0 10.47 11.06 15.43 25.60 16.41 9.85 8.40 23.51 58.19 42.90 1.28 1.20 18.39 368.38 102.06 84.32 159.49 0.00 0.00 6.85 221.77 166.41 121.53 52 E10a_E11a KnownJunction 0 0.00 6.58 27.23 22.57 31.66 18.97 7.86 32.74 79.22 47.92 0.00 6.00 13.47 394.14 125.22 86.47 256.76 0.00 0.00 11.12 308.33 195.15 83.40 53 ER11a ExonRegion 0 32.16 9.55 32.65 28.25 25.18 11.51 5.69 25.62 68.29 44.02 1.29 4.63 42.21 381.38 83.80 69.76 211.03 0.13 0.00 9.95 303.91 205.25 120.24 54 E11_Da KnownBoundary 0 14.45 0.00 4.49 2.06 4.07 5.79 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E11a_E12a KnownJunction 0 36.67 17.50 47.72 49.74 15.96 13.91 16.03 34.95 101.45 64.41 2.53 0.00 60.06 404.32 113.36 81.94 268.16 1.66 0.00 5.75 326.00 241.75 208.97 56 ER11b ExonRegion 0 10.81 0.00 1.17 0.80 1.40 1.30 0.00 0.00 0.59 0.00 0.00 0.00 0.00 1.80 2.90 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 57 ER12a ExonRegion 0 20.88 10.32 31.08 28.58 23.95 10.92 14.55 23.00 73.34 41.86 2.57 4.30 47.80 406.27 97.57 70.86 237.96 0.49 0.00 7.58 288.66 201.19 140.66 58 E12a_E13a KnownJunction 0 13.26 9.21 41.51 28.47 23.43 29.98 16.96 34.95 90.13 47.52 2.21 11.85 33.60 453.00 115.58 66.14 242.08 0.00 0.00 3.26 295.42 178.74 109.01 59 ER13a ExonRegion 0 9.84 8.50 27.87 37.92 19.45 16.44 4.75 29.41 59.01 40.66 2.01 5.64 34.98 349.27 81.38 58.98 205.39 1.03 0.00 6.56 220.64 190.92 124.06 60 E13a_E14a KnownJunction 0 6.82 5.85 28.00 40.92 14.77 20.78 3.97 39.47 54.14 45.72 2.32 7.65 38.47 283.13 103.22 22.39 119.96 1.99 0.00 3.20 220.36 127.00 110.89 61 ER14a ExonRegion 0 14.82 8.57 24.16 39.98 15.44 14.71 7.15 35.17 47.14 35.04 2.91 5.80 41.83 403.88 86.97 69.68 211.11 1.42 0.00 9.63 287.14 180.77 108.81 62 E14_Ab KnownBoundary 0 57.27 14.27 25.37 41.59 17.91 10.16 9.94 41.81 64.61 46.50 2.21 7.35 55.19 403.26 92.47 101.68 208.41 2.57 0.00 2.68 333.29 252.47 152.03 63 ER14b ExonRegion 0 28.59 12.09 19.85 29.22 19.76 15.21 4.96 39.45 53.46 42.45 2.37 0.98 40.83 323.26 97.71 76.92 155.14 1.28 0.00 7.91 263.24 178.71 119.54 64 E14a_E15a KnownJunction 0 10.22 8.62 16.50 44.52 32.09 10.79 9.58 44.40 71.32 52.78 0.00 0.00 33.11 339.57 92.22 42.38 159.79 2.16 0.00 6.01 269.66 162.88 135.47 65 ER15a ExonRegion 0 27.54 9.71 26.64 28.67 32.59 17.04 12.67 32.98 52.06 37.98 0.44 5.05 32.98 365.42 90.41 83.32 215.89 1.07 0.00 3.88 267.08 211.31 116.23 66 E15a_E16a KnownJunction 0 22.74 5.85 42.90 39.69 36.50 8.23 7.86 37.75 58.13 50.74 0.00 0.00 46.26 419.57 149.82 95.62 310.89 5.06 0.00 0.00 289.86 231.83 127.19 67 ER16a ExonRegion 0 18.58 13.84 43.50 37.95 55.06 20.05 15.26 31.52 62.36 44.10 1.11 2.46 44.32 403.98 100.21 93.35 197.80 1.95 0.00 3.23 241.44 194.57 133.34 68 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E16a_E18a KnownJunction 0 9.48 8.55 22.94 42.75 8.23 0.00 4.24 41.98 55.41 37.90 2.68 0.00 52.76 465.89 148.71 80.41 122.21 0.00 0.00 5.94 247.23 152.78 113.87 70 E16a_E19a NovelJunction 0 0.00 15.13 6.53 1.83 12.90 0.00 6.23 4.31 2.43 16.01 0.00 0.00 0.00 98.95 22.62 38.28 17.95 0.00 0.00 0.00 25.02 29.09 12.04 71 ER17a ExonRegion 0 5.11 0.58 2.07 1.15 0.76 0.00 1.31 1.82 1.59 0.73 0.00 0.51 0.55 7.27 0.63 5.47 3.74 0.00 0.00 1.21 3.12 5.90 2.08 72 Ix_SR1 SilentIntronRegion 0 15.37 0.67 0.60 2.35 3.55 0.00 1.09 1.70 1.82 0.56 0.00 1.18 4.74 4.26 8.06 4.41 7.63 0.00 0.00 0.70 0.36 2.75 0.48 73 Ix_AR2 ActiveIntronRegion 0 22.65 1.79 4.14 2.30 12.13 0.92 4.50 3.57 1.85 0.43 0.49 1.28 2.92 5.73 5.35 4.12 4.16 0.00 0.00 1.88 2.50 5.77 2.59 74 ER18a ExonRegion 0 18.90 8.52 34.66 29.29 22.00 12.46 10.29 31.33 43.76 36.11 3.10 2.80 26.38 340.97 92.94 59.44 150.25 0.00 0.00 6.34 190.60 133.17 101.26 75 E18a_E19a KnownJunction 0 27.86 22.69 45.68 40.32 118.34 43.33 29.37 32.33 37.38 22.19 2.58 0.00 62.82 622.52 188.02 107.15 172.60 0.00 0.00 0.00 226.60 188.35 212.47 76 Ix_AR2 ActiveIntronRegion 0 5.29 0.00 2.45 5.45 10.70 1.83 1.32 3.46 4.94 0.76 0.00 2.89 18.76 10.02 2.90 2.97 3.30 0.00 0.00 2.13 2.20 6.25 2.94 77 ER19a ExonRegion 0 27.03 22.07 30.37 26.54 44.55 9.75 13.30 24.07 43.78 24.17 3.17 2.96 46.29 408.86 108.27 65.97 155.09 0.00 0.00 4.41 146.79 131.11 121.26 78 E19a_E20a KnownJunction 0 45.19 17.30 31.99 22.81 40.41 26.69 27.51 18.20 29.43 27.83 2.58 0.00 32.47 373.66 83.19 27.69 104.44 0.00 0.00 0.00 93.53 83.46 92.11 79 Ix_AR2 ActiveIntronRegion 0 9.92 2.80 4.53 3.92 19.18 0.00 7.66 4.26 3.04 4.71 0.00 0.00 7.53 6.56 7.20 4.92 1.82 0.00 0.88 2.35 1.82 3.45 2.43 80 E20_Aa NovelBoundary 0 48.90 3.16 2.93 3.33 20.63 0.00 7.55 11.79 4.05 5.53 0.00 0.00 13.64 19.25 8.90 4.36 4.68 0.00 9.41 8.63 5.93 3.06 4.35 81 ER20a ExonRegion 0 88.34 21.79 40.50 43.21 67.48 17.41 26.72 29.93 34.96 27.45 3.36 5.04 69.23 367.39 81.13 38.84 146.59 0.50 0.00 5.18 105.50 112.17 91.72 82 E20_Da NovelBoundary 0 21.49 9.01 4.23 7.72 12.05 0.00 5.74 21.48 7.18 6.45 0.00 0.00 0.00 24.96 9.02 0.00 3.83 0.00 8.47 14.25 4.76 11.33 7.43 83 E20a_E21a KnownJunction 0 43.56 2.57 44.74 47.95 45.16 7.44 6.76 30.97 39.26 28.55 0.00 0.00 82.46 365.71 100.38 34.09 150.54 0.00 0.00 0.00 56.34 78.93 72.05 84 Ix Intron 0 32.01 9.35 4.09 7.74 17.17 3.11 9.29 6.86 4.90 3.31 1.29 1.60 10.35 19.80 11.37 8.80 10.58 0.94 1.16 4.51 6.67 10.34 7.99 85 Ix_AR1 ActiveIntronRegion 0 31.23 9.17 4.33 8.66 18.66 3.07 9.81 6.61 5.40 3.61 1.35 1.30 11.41 19.54 11.21 9.17 10.44 0.90 1.11 4.76 5.88 10.56 7.83 86 Ix_SR1 SilentIntronRegion 0 37.36 10.62 2.49 1.85 7.62 3.34 5.95 8.50 1.68 1.38 0.88 3.59 3.52 21.65 12.51 6.47 11.64 1.25 1.45 2.91 11.84 8.99 9.12 87 E21_Aa NovelBoundary 0 32.01 12.17 1.39 5.43 11.38 0.00 8.21 12.86 3.56 5.78 0.00 0.00 12.82 17.01 23.61 13.07 8.60 0.00 0.00 3.26 14.76 14.70 4.35 88 ER21a ExonRegion 0 175.62 42.83 58.76 66.38 132.11 23.26 31.60 49.27 40.32 37.38 3.21 7.59 48.31 208.70 134.94 41.54 98.99 0.27 1.74 6.24 70.12 172.67 62.49