Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC3A1 Gene 0 3.21 6.35 2.68 8.17 6.91 3.85 8.11 3.90 4.50 2.91 0.78 3.48 4.63 1.37 2.39 2.25 1.73 1.99 2.99 4.72 1.20 1.07 1.45 2 260649 Transcript 0 1.14 1.93 1.18 4.28 4.26 4.14 6.70 3.47 2.47 1.75 0.66 1.95 2.44 0.46 0.38 1.13 1.13 1.78 1.21 1.77 0.93 1.77 0.45 3 409387 Transcript 0 1.78 6.99 6.71 7.42 5.45 5.50 8.41 4.32 4.27 4.24 0.31 6.01 5.57 1.76 3.47 1.19 0.53 2.02 3.95 5.70 1.32 1.58 2.46 4 410056 Transcript 0 0.37 2.17 0.96 7.12 1.41 0.97 3.99 1.44 4.58 0.30 0.00 2.51 0.82 0.24 1.74 0.00 0.00 0.00 0.56 1.01 0.78 0.00 0.00 5 409741 Transcript 0 1.77 4.23 0.00 1.25 0.94 7.29 7.59 3.04 1.37 1.89 0.00 1.29 5.58 0.00 0.55 0.00 0.45 0.00 0.00 4.83 0.00 0.00 0.00 6 409229 Transcript 0 7.09 12.72 4.45 10.37 17.89 6.14 12.82 6.53 6.66 3.95 1.27 4.69 10.54 3.87 6.39 6.60 4.43 3.58 4.25 9.48 3.01 1.62 3.74 7 409380 Transcript 0 1.26 1.49 0.00 4.90 1.13 0.98 4.86 0.64 0.89 1.22 0.20 0.62 0.34 0.73 0.25 0.18 0.01 0.30 0.54 0.82 0.00 0.18 0.00 8 427285 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 409294 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 409740 Transcript 0 6.09 11.17 1.93 7.41 6.46 2.71 13.69 3.93 5.56 1.55 0.78 5.51 6.90 1.25 5.50 4.35 2.49 3.32 5.94 7.63 1.32 0.31 2.66 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 12 ER1b ExonRegion 0 1.85 0.00 0.00 2.73 0.00 0.00 1.77 0.19 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 1.47 0.00 0.00 13 E1_Ac KnownBoundary 0 7.26 0.00 0.00 9.16 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 0.44 0.36 0.00 3.00 0.32 0.00 1.12 0.89 0.87 0.42 0.00 0.00 0.00 0.16 0.49 0.00 0.78 0.65 1.80 1.60 0.26 0.00 0.00 15 E1a_E2a KnownJunction 0 0.00 3.35 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 1.62 0.29 0.00 4.86 1.52 0.00 1.68 0.00 2.87 0.95 1.41 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 1.62 0.00 0.59 0.00 17 E2a_E3a KnownJunction 0 5.70 0.00 0.00 3.36 0.00 0.00 2.25 0.00 2.81 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.20 0.00 0.00 7.25 0.21 0.00 1.53 0.85 2.52 1.10 0.91 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.73 0.00 0.00 19 E3a_E4c KnownJunction 0 0.00 0.00 0.00 3.93 3.65 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER4a ExonRegion 0 1.05 0.50 0.00 1.88 1.32 0.68 4.84 0.00 0.45 0.44 0.39 0.00 0.00 0.66 0.51 0.37 0.00 0.59 0.00 0.54 0.00 0.00 0.00 21 E4_Ab KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 8.79 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 22 ER4b ExonRegion 0 1.33 0.43 0.00 2.80 2.25 0.00 5.79 1.69 0.77 3.21 1.77 0.00 0.81 0.69 0.00 0.00 0.00 0.15 3.25 0.88 0.00 0.00 0.00 23 E4_Da KnownBoundary 0 0.00 0.00 0.00 5.19 0.00 0.00 2.25 3.86 1.74 3.33 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 3.58 0.00 0.00 0.00 0.00 24 E4a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4c ExonRegion 0 1.47 2.47 0.00 7.93 0.94 1.27 4.88 1.29 1.32 2.01 0.00 1.24 0.67 0.79 0.00 0.00 0.01 0.00 1.08 1.11 0.00 0.36 0.00 26 E4_Ac KnownBoundary 0 0.00 0.00 0.00 19.78 0.00 0.00 4.95 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 0.00 0.00 27 ER4d ExonRegion 0 5.08 2.49 0.16 13.29 0.81 0.75 3.05 0.00 2.44 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.23 0.00 0.90 0.58 0.00 28 E4b_E5a KnownJunction 0 0.00 0.00 1.39 9.42 0.00 0.00 4.33 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 29 ER5a ExonRegion 0 3.19 1.82 1.48 10.33 2.02 1.51 3.60 2.30 1.41 1.07 0.00 2.66 3.46 0.00 0.36 0.00 0.00 0.68 0.00 0.00 0.93 2.45 0.00 30 E5_Ab KnownBoundary 0 6.89 0.00 1.24 19.31 3.40 0.00 4.15 6.57 4.48 1.67 0.00 5.85 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 3.15 0.00 0.00 31 ER5b ExonRegion 0 4.17 4.78 1.28 14.91 2.51 2.59 9.50 4.06 3.25 1.35 0.00 0.48 0.00 0.00 1.34 1.37 0.00 1.64 0.00 3.38 0.94 0.00 0.00 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 6.99 0.00 2.73 4.42 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER6a ExonRegion 0 0.00 2.59 0.70 10.32 2.80 1.05 2.96 0.08 3.15 1.15 1.17 4.33 0.00 0.81 1.49 0.78 0.00 4.09 0.00 0.00 0.00 0.00 0.00 35 E6_Da KnownBoundary 0 0.00 0.00 1.77 13.35 14.35 2.90 4.50 0.00 4.48 2.90 0.00 0.00 0.00 0.00 4.82 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 36 ER6b ExonRegion 0 2.79 5.11 0.87 14.33 7.57 0.89 3.16 2.61 4.70 2.29 0.00 2.11 0.00 0.00 0.57 0.00 0.00 1.85 0.16 1.40 0.00 0.00 0.00 37 E6_Db KnownBoundary 0 0.00 12.10 0.00 9.59 0.00 0.00 4.24 5.01 3.27 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 38 E6b_E7b KnownJunction 0 7.33 6.71 0.00 6.49 0.00 0.00 0.00 0.00 0.00 1.37 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 39 ER6c ExonRegion 0 0.37 2.17 0.96 7.12 1.41 0.97 3.99 1.44 4.58 0.30 0.00 2.51 0.82 0.24 1.74 0.00 0.00 0.00 0.56 1.01 0.78 0.00 0.00 40 E7_Aa NovelBoundary 0 227.97 47.23 715.03 1047.49 78.27 42.02 105.11 581.57 619.44 424.71 23.16 15.61 34.74 13.89 52.17 12.56 43.95 468.71 35.67 137.04 16.49 14.02 37.30 41 ER7a ExonRegion 0 6.09 11.17 1.93 7.41 6.46 2.71 13.69 3.93 5.56 1.55 0.78 5.51 6.90 1.25 5.50 4.35 2.49 3.32 5.94 7.63 1.32 0.31 2.66 42 E7_Ab KnownBoundary 0 0.00 21.64 1.57 5.39 0.00 4.94 4.28 15.24 8.42 0.00 2.53 0.00 6.82 0.00 6.30 4.36 0.00 0.00 4.24 5.82 0.00 0.00 0.00 43 ER7b ExonRegion 0 4.93 13.19 0.48 15.02 5.43 0.69 4.97 5.32 13.02 2.39 1.24 3.26 2.38 0.02 2.14 3.34 0.00 4.08 12.19 5.59 0.94 0.00 0.77 44 E7a_E8a KnownJunction 0 0.00 3.35 0.00 14.62 3.65 2.50 3.44 0.00 1.10 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 3.09 0.00 0.00 45 I7 Intron 0 5.98 18.68 3.00 6.53 10.78 2.61 6.18 7.40 6.73 3.19 0.19 3.75 5.66 0.76 3.63 1.17 2.27 1.33 3.68 5.49 0.49 0.56 1.15 46 I7_AR1 ActiveIntronRegion 0 0.83 5.16 0.00 0.81 7.61 1.19 0.95 0.46 1.48 0.71 0.00 0.00 3.43 0.00 1.47 1.51 2.14 0.10 17.27 3.36 2.42 0.00 0.00 47 I7_AR2 ActiveIntronRegion 0 7.97 18.40 3.69 9.47 9.17 0.56 6.69 3.36 5.58 4.76 0.49 0.90 2.31 0.00 4.30 0.96 5.12 0.65 4.79 6.77 0.80 0.53 2.24 48 I7_SR1 SilentIntronRegion 0 5.97 19.27 3.05 6.44 11.09 2.90 6.34 8.13 7.08 3.11 0.16 4.22 6.13 0.88 3.65 1.18 1.95 1.46 3.02 5.43 0.37 0.59 1.08 49 E8_Aa NovelBoundary 0 6.82 27.89 3.96 7.66 18.51 6.93 6.05 17.33 7.06 2.79 0.00 18.16 28.24 2.41 0.00 0.00 4.77 4.81 0.00 20.33 0.00 0.00 0.00 50 ER8a ExonRegion 0 5.87 18.82 2.22 17.12 10.30 7.72 8.83 4.02 10.30 2.65 2.16 7.60 10.83 2.42 2.47 2.71 4.91 1.88 3.89 7.98 0.92 0.63 0.89 51 E8_Da KnownBoundary 0 3.78 12.63 1.54 9.99 10.95 14.37 15.99 9.08 8.28 7.44 0.00 6.30 15.10 0.00 4.45 0.00 0.00 0.00 0.00 9.46 0.00 0.00 0.00 52 E8a_E9a KnownJunction 0 3.26 3.09 0.00 12.42 8.32 0.00 9.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 53 ER8b ExonRegion 0 1.77 4.23 0.00 1.25 0.94 7.29 7.59 3.04 1.37 1.89 0.00 1.29 5.58 0.00 0.55 0.00 0.45 0.00 0.00 4.83 0.00 0.00 0.00 54 E8_Db NovelBoundary 0 0.00 18.22 0.00 14.78 7.47 5.79 5.83 9.20 2.86 0.00 0.00 11.70 20.45 7.42 6.06 4.10 9.44 2.16 0.00 8.88 0.00 0.00 0.00 55 E9_Aa NovelBoundary 0 5.93 18.68 2.93 16.71 4.33 10.79 16.52 6.53 8.97 7.55 0.00 11.70 0.00 0.00 0.00 0.00 21.51 1.82 3.76 15.79 0.00 0.00 0.00 56 ER9a ExonRegion 0 7.65 9.47 4.72 16.81 17.04 3.82 6.79 8.42 4.06 8.03 0.78 5.18 6.73 2.33 0.00 4.93 3.95 3.81 4.00 14.82 1.17 0.00 1.71 57 E9_Da KnownBoundary 0 6.59 6.71 1.54 12.69 22.75 2.38 8.44 4.27 4.75 9.46 2.32 6.30 0.00 4.94 0.00 11.02 15.99 4.27 3.48 11.51 2.59 0.00 4.10 58 E9a_E10a KnownJunction 0 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E9a_E11a KnownJunction 0 3.78 5.72 0.00 6.43 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER9b ExonRegion 0 3.87 10.01 1.59 12.00 13.65 4.37 10.40 6.72 9.78 4.47 1.51 5.75 8.79 0.32 0.42 4.74 7.34 2.07 3.20 8.19 1.27 0.90 1.62 61 E9_Db KnownBoundary 0 9.26 15.19 1.27 17.85 27.25 2.73 15.06 4.97 13.40 4.00 2.68 0.00 6.17 0.00 0.00 13.07 4.77 7.67 4.14 2.88 0.00 0.00 0.00 62 ER9c ExonRegion 0 7.09 12.72 4.45 10.37 17.89 6.14 12.82 6.53 6.66 3.95 1.27 4.69 10.54 3.87 6.39 6.60 4.43 3.58 4.25 9.48 3.01 1.62 3.74 63 E9_Dc NovelBoundary 0 6.96 21.44 1.54 5.16 16.89 16.52 14.49 8.75 5.79 1.40 0.00 0.00 0.00 0.00 0.00 4.19 0.00 3.77 0.00 5.82 5.87 0.00 0.00 64 E10_Aa NovelBoundary 0 15.11 20.00 10.56 16.48 6.88 15.79 12.06 7.52 18.69 18.91 0.00 18.31 0.00 7.12 4.33 12.56 3.65 11.86 4.71 18.54 9.58 2.39 10.16 65 ER10a ExonRegion 0 3.55 13.97 13.43 13.11 10.91 10.99 16.83 8.65 8.53 8.47 0.62 12.01 11.14 3.53 6.93 2.38 1.06 4.04 7.89 11.40 2.64 3.16 4.93 66 E10_Da NovelBoundary 0 10.37 5.53 4.29 25.14 8.32 13.29 13.12 10.47 6.77 12.63 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 3.12 0.00 67 E11_Aa NovelBoundary 0 280.79 1103.69 283.02 463.84 713.92 950.53 693.13 403.88 508.33 330.97 96.60 166.55 145.77 137.21 144.26 122.70 118.19 142.72 300.43 393.92 113.61 154.00 124.37 68 ER11a ExonRegion 0 1.04 0.69 0.11 1.77 0.37 0.68 0.50 0.67 0.18 1.01 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.99 0.02 0.00 69 E11_Da KnownBoundary 0 10.08 19.60 8.31 8.89 78.61 35.83 10.82 9.98 19.24 4.62 4.95 0.00 6.17 0.00 0.00 0.00 0.00 12.60 4.33 14.83 2.97 5.88 0.00 70 E11_Db KnownBoundary 0 0.00 21.77 0.00 3.90 12.65 15.79 6.40 0.00 0.00 3.14 0.00 0.00 0.00 0.00 0.00 0.00 4.11 1.66 4.24 2.36 6.05 0.00 0.00 71 ER11b ExonRegion 0 2.12 0.00 1.23 2.73 1.98 7.97 2.65 1.73 1.24 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 2.08 0.00 72 ER11c ExonRegion 0 2.27 3.85 2.36 8.56 8.52 8.28 13.40 6.95 4.95 3.51 1.32 3.90 4.88 0.91 0.75 2.25 2.25 3.56 2.41 3.54 0.54 3.54 0.89