Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YIPF4 Gene 0 94.51 226.69 161.55 224.20 195.87 140.42 151.35 105.22 110.49 122.84 41.83 115.97 97.11 61.66 67.43 63.40 58.67 51.15 47.05 92.19 33.06 121.77 56.23 2 238831 Transcript 0 79.92 173.87 164.29 211.50 245.48 215.13 220.91 125.05 148.83 171.31 145.38 233.49 161.92 159.02 153.07 115.66 189.40 60.69 55.27 167.11 70.85 247.46 89.00 3 495355 Transcript 0 1.59 7.20 8.52 17.64 8.42 1.32 16.03 5.05 4.11 6.57 0.61 9.67 10.09 0.37 0.37 0.53 4.17 2.15 2.87 7.85 0.00 1.26 2.65 4 437765 Transcript 0 0.00 2.50 0.00 2.06 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.20 0.00 0.00 0.00 5 441084 Transcript 0 3.41 2.83 16.41 15.02 7.39 0.00 15.06 8.01 6.11 20.04 0.00 17.86 32.63 17.25 5.19 8.63 8.88 2.57 3.67 12.40 3.03 11.76 8.45 6 ER1a ExonRegion 1 22.95 27.81 35.20 16.92 33.71 110.84 62.88 19.29 21.70 42.23 69.00 6.30 14.20 81.89 71.91 110.75 109.05 93.19 52.47 58.46 93.78 56.15 106.32 7 E1_Ab KnownBoundary 0 11.34 40.58 73.74 33.76 7.89 9.71 9.58 32.82 44.82 84.56 48.96 6.30 0.00 183.06 108.91 167.99 128.66 132.40 106.54 111.92 67.34 116.40 167.74 8 ER1b ExonRegion 0 33.47 69.06 58.15 50.36 42.16 96.35 43.95 42.72 67.36 82.31 72.54 21.01 33.93 171.09 143.30 200.91 106.15 155.08 96.56 123.17 74.56 137.06 156.30 9 E1a_E2a KnownJunction 1 63.49 131.10 80.13 68.82 220.88 340.94 129.93 41.81 95.60 115.48 123.24 51.17 13.96 173.52 56.86 74.77 209.26 113.54 30.21 151.23 87.23 130.12 99.19 10 ER1c ExonRegion 1 64.20 116.59 65.76 56.33 176.60 273.24 111.65 49.55 88.10 111.63 132.08 63.50 17.20 186.77 80.27 73.31 207.96 113.94 29.73 147.52 96.96 149.32 88.10 11 I1_AR4 ActiveIntronRegion 1 0.00 0.00 7.25 12.61 15.61 0.61 28.91 10.08 2.78 4.21 0.00 6.49 28.14 0.00 2.18 3.22 9.08 0.00 3.19 8.51 2.20 1.74 5.38 12 I1_AR5 ActiveIntronRegion 1 0.00 0.00 5.35 13.38 27.49 1.83 24.67 10.68 1.35 4.90 0.00 8.66 42.21 0.00 2.90 2.97 5.40 0.00 0.58 9.09 2.20 0.00 6.94 13 I1_AR6 ActiveIntronRegion 1 0.00 1.61 5.96 12.08 41.34 1.83 19.45 10.37 4.34 4.90 0.00 6.27 30.73 0.00 4.60 0.00 4.33 3.31 3.19 13.57 0.00 0.00 7.29 14 ER2a ExonRegion 1 99.68 194.71 104.81 134.29 229.56 308.14 254.54 99.24 128.05 163.29 173.68 179.53 123.46 177.29 157.87 102.44 231.51 77.76 47.57 174.74 101.43 246.15 87.51 15 E2_Da KnownBoundary 0 2.96 13.68 3.64 19.54 12.99 0.00 15.94 6.86 6.94 2.77 2.21 0.00 6.82 2.24 0.00 0.00 0.00 0.00 0.00 2.88 0.00 3.06 0.00 16 E2a_E3a KnownJunction 1 64.75 212.92 170.63 203.64 233.36 273.19 297.30 167.09 200.81 237.16 265.12 282.54 229.21 238.45 247.98 131.50 335.20 59.20 51.11 268.64 115.09 335.93 88.35 17 E2a_E4a KnownJunction 0 0.00 2.50 0.00 2.06 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.20 0.00 0.00 0.00 18 ER2b ExonRegion 0 1.59 7.20 8.52 17.64 8.42 1.32 16.03 5.05 4.11 6.57 0.61 9.67 10.09 0.37 0.37 0.53 4.17 2.15 2.87 7.85 0.00 1.26 2.65 19 ER3a ExonRegion 0 91.17 134.05 216.84 297.20 287.29 278.88 249.57 164.01 209.16 237.76 230.05 371.05 240.17 269.37 261.82 195.75 308.06 83.12 82.73 273.02 94.43 410.97 168.17 20 E3a_E4a KnownJunction 0 107.20 180.23 201.50 251.52 444.74 322.14 358.73 154.85 203.12 221.66 255.64 449.40 209.89 265.82 217.44 157.05 313.04 44.69 57.79 216.74 75.74 389.75 80.24 21 E3a_E5a NovelJunction 0 2.82 5.46 1.57 5.86 15.96 5.34 22.74 5.79 17.27 4.08 7.11 12.60 0.00 17.42 8.90 7.18 14.31 3.56 3.76 3.26 5.68 41.82 3.67 22 I3_AR4 ActiveIntronRegion 0 22.22 9.49 16.95 31.35 17.84 7.34 16.99 8.64 14.82 9.18 3.87 18.04 23.45 1.62 8.70 8.92 3.30 5.54 6.37 22.34 0.00 13.20 5.87 23 ER4a ExonRegion 0 115.13 181.38 213.17 266.13 290.87 240.82 264.38 135.42 191.32 237.48 210.07 352.91 209.01 264.02 236.19 190.33 248.12 86.04 91.72 245.14 88.46 339.67 156.06 24 E4a_E5a KnownJunction 0 162.84 220.88 315.72 390.79 246.35 249.69 269.70 167.66 233.07 269.02 200.89 284.64 211.67 365.00 234.87 266.17 252.45 95.88 118.12 224.92 120.71 301.82 271.63 25 ER5a ExonRegion 0 217.32 321.57 240.41 336.68 365.58 374.57 438.27 177.00 222.40 276.11 268.64 329.39 310.07 339.23 266.87 274.20 338.18 94.24 117.55 245.19 130.27 448.46 224.94 26 E5_Ab KnownBoundary 0 103.87 200.29 171.79 255.94 256.54 250.65 372.78 155.05 188.97 266.07 187.94 375.42 350.14 235.68 226.59 138.68 257.32 63.55 108.24 205.43 132.33 292.57 84.00 27 ER5b ExonRegion 0 131.39 201.40 188.28 242.07 288.31 277.57 305.78 131.60 163.58 252.10 180.76 372.00 279.87 237.00 220.55 146.49 246.81 63.93 80.37 205.28 105.95 308.56 99.79 28 E5a_E6a KnownJunction 0 212.41 233.12 226.63 284.98 360.02 304.37 325.92 134.19 148.93 223.09 204.26 395.98 262.97 265.35 254.28 128.77 216.18 74.24 71.72 153.85 115.71 360.48 95.52 29 E5a_E6b KnownJunction 0 3.41 2.83 16.41 15.02 7.39 0.00 15.06 8.01 6.11 20.04 0.00 17.86 32.63 17.25 5.19 8.63 8.88 2.57 3.67 12.40 3.03 11.76 8.45 30 I5 Intron 0 9.89 15.45 7.32 16.24 22.65 6.34 21.82 8.90 6.32 8.14 1.80 12.84 20.29 3.31 5.73 12.18 7.01 4.51 3.88 16.31 1.85 7.52 5.73 31 I5_SR2 SilentIntronRegion 0 10.85 10.64 8.24 18.49 24.45 4.80 22.44 10.34 6.47 9.19 1.59 11.22 19.89 3.61 5.43 11.50 7.69 5.38 3.88 16.40 2.13 7.47 6.11 32 I5_AR2 ActiveIntronRegion 0 10.89 36.41 7.45 11.77 21.63 7.76 18.50 8.93 6.92 9.34 1.42 11.02 24.50 2.82 3.44 13.32 4.67 2.03 5.62 19.68 1.94 7.96 3.45 33 I5_SR3 SilentIntronRegion 0 5.68 20.87 5.89 15.19 26.49 10.83 26.18 5.79 7.54 6.83 2.59 23.61 25.18 3.03 5.70 17.20 6.84 4.33 2.14 17.17 1.11 8.39 7.39 34 ER6a ExonRegion 0 132.99 311.20 236.22 286.03 289.92 238.20 269.18 192.24 176.58 256.65 163.55 338.59 211.24 193.18 168.04 151.87 172.62 49.14 67.50 151.91 67.28 330.43 128.03 35 E6_Da KnownBoundary 1 182.48 503.92 220.90 268.30 410.36 327.77 394.33 181.05 162.93 233.35 60.75 323.96 249.98 82.76 179.74 146.97 48.15 18.78 53.84 148.61 23.23 340.46 98.68 36 ER6b ExonRegion 1 94.95 243.49 200.53 266.67 298.21 192.23 237.09 150.55 163.70 194.26 36.43 233.91 227.69 69.75 77.05 51.77 39.86 29.75 42.62 114.23 21.71 230.12 48.80 37 E6_Ab KnownBoundary 1 203.30 104.39 166.61 254.81 349.32 259.91 373.62 118.33 144.07 107.72 15.74 139.70 206.64 102.83 54.89 58.10 35.53 38.30 64.00 175.45 23.78 79.85 88.18 38 ER6c ExonRegion 1 109.65 254.48 149.36 209.66 162.47 113.12 130.95 91.57 113.47 95.67 18.22 121.21 90.75 46.50 47.27 35.30 33.26 18.38 39.63 97.10 22.36 91.38 40.03 39 E6_Db KnownBoundary 0 80.61 599.56 153.22 196.61 72.50 72.23 53.04 80.87 76.42 107.31 9.16 80.28 40.42 38.55 59.09 15.89 11.69 9.74 30.31 55.67 2.72 111.93 39.69 40 ER6d ExonRegion 0 98.47 244.72 161.05 233.04 175.60 113.49 119.87 94.52 94.51 94.79 16.01 57.77 50.38 28.84 42.20 47.11 31.21 54.21 44.91 71.59 24.37 61.83 42.13 41 IG15 Intergenic 0 22.10 13.03 10.04 20.99 42.63 15.27 21.39 13.43 11.77 10.96 1.87 6.29 9.00 3.41 6.98 9.62 5.55 5.03 6.82 10.76 1.95 5.78 6.28 42 IG15_AR1 ActiveIntergenicRegion 0 56.56 70.42 52.24 124.17 193.36 77.29 86.21 58.18 56.09 48.24 2.55 44.17 47.35 13.72 21.87 20.14 13.67 8.33 11.99 40.44 2.90 47.04 18.24 43 IG15_SR1 SilentIntergenicRegion 0 66.71 39.51 36.94 70.11 124.83 75.47 48.86 44.58 43.76 33.39 2.68 18.38 20.13 11.75 16.80 20.93 10.21 13.42 18.82 24.11 5.47 18.30 17.60 44 IG15_AR2 ActiveIntergenicRegion 0 388.97 109.81 62.09 98.58 244.38 119.40 81.94 73.75 71.91 49.06 6.66 17.32 30.22 19.31 28.05 85.53 6.60 32.23 53.80 56.74 15.43 25.00 43.40 45 IG15_AR3 ActiveIntergenicRegion 0 145.10 52.51 57.08 83.97 165.67 58.79 62.91 85.85 66.31 51.47 2.78 21.48 15.46 11.48 19.14 14.49 7.96 7.36 12.27 24.71 5.25 41.38 15.74 46 IG15_SR2 SilentIntergenicRegion 0 14.62 11.30 6.26 12.43 33.08 6.59 19.00 7.64 6.49 6.15 0.86 4.82 10.20 1.37 6.00 7.54 4.78 3.20 5.19 11.17 0.75 3.00 3.50 47 IG15_AR4 ActiveIntergenicRegion 0 59.97 42.71 15.93 30.29 69.57 0.00 38.84 6.91 14.82 10.83 0.00 4.33 9.38 0.00 12.25 13.54 9.90 6.78 6.02 9.22 0.00 5.56 2.94 48 IG15_AR5 ActiveIntergenicRegion 0 26.44 24.63 5.34 20.49 42.61 8.48 28.41 8.42 6.96 10.65 3.07 4.26 9.33 4.03 4.86 11.18 5.31 4.00 4.65 12.49 1.27 4.59 3.87 49 IG15_SR3 SilentIntergenicRegion 0 11.83 6.21 4.25 11.21 25.75 6.72 14.80 6.70 5.44 6.32 1.66 3.46 6.11 1.93 5.05 7.99 4.77 4.19 5.49 7.36 1.66 2.04 4.92