Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 COX7A2L Gene 0 117.37 291.34 225.83 197.70 172.86 193.38 136.50 98.93 74.24 86.64 171.05 78.10 78.30 116.57 139.35 112.93 121.46 76.81 161.41 88.71 102.06 97.21 108.23 2 378669 Transcript 0 5.55 9.04 7.56 10.37 8.36 4.98 4.44 7.04 3.33 4.35 1.58 7.65 12.73 1.16 2.23 1.63 1.48 2.18 24.87 5.07 0.81 4.32 2.49 3 456285 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 417221 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 234301 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 407053 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 397185 Transcript 0 7.52 3.00 1.89 0.81 3.69 2.56 7.89 1.69 0.47 1.34 1.61 0.50 8.54 2.18 1.18 4.46 2.36 5.38 0.49 3.09 1.79 2.70 3.29 8 464443 Transcript 0 0.00 2.33 5.20 0.34 0.95 0.00 0.34 0.43 4.88 0.81 4.78 0.14 0.65 1.54 5.63 6.18 3.33 5.92 23.51 4.74 1.15 6.30 6.63 9 463055 Transcript 1 4.65 1.60 2.61 5.54 9.67 5.34 21.20 5.23 2.20 4.31 4.69 17.80 16.03 2.94 3.92 4.54 6.15 4.66 5.01 5.41 1.73 1.96 4.61 10 468711 Transcript 0 2.83 0.48 1.01 2.88 1.68 2.02 5.21 2.43 1.16 1.20 2.58 2.51 0.61 3.24 2.51 4.27 1.30 5.34 4.53 7.95 1.21 3.26 2.08 11 482463 Transcript 0 6.54 2.67 6.15 4.89 2.56 2.99 5.82 2.54 2.51 1.87 6.67 6.80 5.43 2.68 3.69 3.75 3.90 2.76 5.82 3.20 1.70 2.56 4.17 12 483777 Transcript 0 17.26 25.28 37.68 18.21 12.99 14.61 16.26 15.72 16.52 18.47 61.01 6.96 14.64 13.16 24.88 26.06 62.50 19.91 32.57 16.36 75.85 11.29 19.84 13 ER1a ExonRegion 0 4.53 0.73 0.00 0.72 0.00 0.65 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 77.07 0.00 0.00 0.74 1.05 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4b NovelJunction 0 6.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 24.38 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.07 0.16 0.88 0.43 0.00 1.40 0.13 0.61 0.44 0.51 1.18 0.29 0.00 0.14 0.55 0.00 0.27 0.00 5.36 1.84 0.82 0.28 0.28 17 E2_Ab KnownBoundary 0 3.19 0.00 0.00 0.00 3.82 13.06 0.00 0.00 2.63 1.61 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 4.33 0.00 3.15 0.00 0.00 18 E2_Ac KnownBoundary 0 3.78 0.00 1.66 0.00 0.00 16.13 0.00 0.00 1.56 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 15.85 0.00 0.00 0.00 19 E2_Ad KnownBoundary 1 6.82 9.01 48.87 37.89 18.42 174.62 16.47 24.48 27.34 42.12 19.95 12.75 7.63 42.62 257.62 8.03 31.32 0.00 25.51 78.94 28.29 11.57 24.07 20 ER2b ExonRegion 0 2.12 0.00 28.49 24.19 0.00 56.85 1.32 18.15 25.94 38.42 8.21 0.00 0.00 10.56 17.41 0.00 13.20 0.00 6.37 41.49 2.20 4.17 2.94 21 ER2c ExonRegion 1 407.96 628.07 349.78 241.09 755.36 1170.79 399.51 143.63 145.68 194.97 631.19 4.55 7.04 208.13 378.47 388.61 533.92 224.96 385.27 313.30 587.62 98.24 467.81 22 E2_Ae KnownBoundary 1 1872.11 2684.46 879.27 631.99 3258.75 4260.44 1616.44 376.20 333.07 421.54 2258.84 6.30 46.75 751.31 803.88 1604.45 1778.49 692.89 1552.80 942.33 1953.96 410.75 1662.87 23 ER2d ExonRegion 1 1007.78 1559.65 765.55 549.58 1799.84 2617.93 963.25 336.44 298.84 406.86 1569.22 11.47 33.06 660.61 938.99 1125.40 1277.61 602.64 1073.63 682.44 1413.79 315.97 1174.07 24 E2_Af KnownBoundary 1 637.45 651.59 453.95 333.92 739.73 599.77 296.29 232.89 173.26 214.04 544.82 37.21 33.93 481.55 449.97 868.58 523.14 442.56 633.62 180.89 347.99 234.95 632.46 25 ER2e ExonRegion 1 1173.65 1688.49 874.76 605.12 1941.20 2615.16 1005.81 389.28 346.21 449.29 1703.81 22.40 49.35 691.24 692.39 1455.31 1411.49 731.55 1259.05 672.99 1455.79 402.75 1353.03 26 ER2f ExonRegion 1 402.17 414.37 572.81 366.36 359.55 392.06 234.70 271.05 234.94 271.51 414.33 61.64 57.63 202.02 265.24 605.81 359.07 470.30 496.65 133.75 307.06 166.89 415.71 27 E2_Da KnownBoundary 0 0.00 5.66 2.66 0.00 7.30 0.00 2.16 0.00 4.51 1.18 2.53 6.15 0.00 4.94 4.94 0.00 0.00 8.21 37.84 2.81 0.00 6.25 0.00 28 E2a_E4b KnownJunction 1 180.92 271.86 408.18 187.06 104.24 113.85 139.51 181.34 152.66 171.54 312.82 29.56 136.03 131.14 258.36 286.25 283.03 169.46 383.07 85.20 345.95 125.53 199.32 29 ER2g ExonRegion 0 0.00 1.38 9.19 0.68 1.90 0.00 0.69 0.86 3.76 1.63 4.67 0.28 1.30 3.08 6.81 4.32 6.67 6.83 15.03 6.48 2.31 7.09 4.89 30 E2b_E4b KnownJunction 0 0.00 3.29 1.21 0.00 0.00 0.00 0.00 0.00 5.99 0.00 4.90 0.00 0.00 0.00 4.45 8.03 0.00 5.02 32.00 3.00 0.00 5.51 8.37 31 ER3a ExonRegion 0 13.08 5.34 10.62 9.77 5.12 3.14 11.65 5.07 5.03 3.74 8.40 13.61 10.86 5.36 7.38 7.50 7.79 5.53 7.22 6.41 3.39 5.13 8.35 32 E3a_E4b KnownJunction 0 0.00 0.00 1.69 0.00 0.00 2.84 0.00 0.00 0.00 0.00 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 33 I3 Intron 0 11.60 5.65 10.30 8.85 13.16 4.86 13.47 6.91 5.74 5.41 4.50 9.13 17.47 5.05 4.00 6.88 6.37 4.02 5.63 5.81 1.98 4.39 8.73 34 I3_AR1 ActiveIntronRegion 0 18.80 5.63 14.84 8.94 14.66 2.42 9.65 9.36 6.01 8.27 3.94 14.12 24.73 6.11 5.87 7.63 6.26 3.94 4.15 7.29 1.53 7.29 7.71 35 I3_SR2 SilentIntronRegion 0 11.68 6.81 10.79 8.27 14.12 6.53 14.46 8.31 6.55 6.60 5.54 10.71 20.99 5.57 3.44 7.17 6.57 4.05 5.28 6.23 1.79 5.34 10.19 36 ER4a ExonRegion 1 46.56 67.11 108.14 48.72 29.43 36.68 38.73 45.80 47.55 53.33 181.21 11.91 26.97 34.51 69.63 76.53 183.20 54.97 92.38 38.83 225.33 33.86 47.72 37 ER4b ExonRegion 1 305.62 515.36 937.03 653.00 390.05 298.07 248.09 405.79 341.99 402.23 1107.92 158.44 157.35 574.53 658.03 783.51 978.10 470.72 922.86 479.05 870.80 349.25 690.49 38 E4_Da KnownBoundary 0 0.00 0.00 3.02 1.96 0.00 8.63 14.09 0.00 3.10 2.55 2.53 0.00 15.75 0.00 0.00 7.95 0.00 2.11 9.60 6.46 0.00 0.00 0.00 39 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E4a_E6a KnownJunction 0 0.00 10.52 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 3.42 0.00 0.00 0.00 7.67 0.00 2.45 13.66 41 E4a_E7a KnownJunction 1 705.98 1058.50 1109.27 872.38 698.73 603.12 421.00 500.61 362.47 381.90 610.94 287.04 214.60 702.63 724.77 1270.52 370.55 895.77 1041.35 465.38 375.73 591.21 977.92 42 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.76 0.00 0.00 4.05 3.07 0.00 2.82 0.00 43 ER4c ExonRegion 1 4.65 1.60 2.61 5.54 9.67 5.34 21.20 5.23 2.20 4.31 4.69 17.80 16.03 2.94 3.92 4.54 6.15 4.66 5.01 5.41 1.73 1.96 4.61 44 I4 Intron 0 2.89 2.22 4.98 4.43 5.11 1.50 11.19 2.81 3.01 2.33 3.69 10.14 16.33 4.48 3.35 2.43 4.50 1.25 1.74 6.38 1.80 0.57 6.41 45 I4_SR1 SilentIntronRegion 0 2.92 2.24 5.03 4.47 5.16 1.52 11.31 2.84 3.04 2.36 3.73 10.25 16.50 4.52 3.39 2.46 4.55 1.27 1.76 6.44 1.82 0.57 6.48 46 E5_Aa NovelBoundary 1 3.04 18.94 10.05 3.43 29.12 2.90 27.47 9.12 5.76 1.10 7.74 44.11 25.97 7.06 0.00 0.00 8.60 4.10 18.54 12.53 2.90 6.25 8.19 47 ER5a ExonRegion 0 0.00 2.12 2.35 1.48 0.33 0.00 1.49 0.00 0.57 3.73 0.08 2.16 0.00 2.23 0.48 3.34 0.41 2.39 0.40 2.66 0.64 0.00 6.24 48 ER5b ExonRegion 0 1.22 4.97 4.40 6.28 8.37 6.55 4.12 0.22 3.18 7.60 0.47 7.86 10.77 4.24 0.48 4.84 1.83 5.51 3.07 8.75 2.12 0.15 6.96 49 E5_Db KnownBoundary 0 6.67 8.22 4.91 10.89 24.87 25.44 7.95 0.00 4.54 6.61 7.16 7.05 13.64 4.94 0.00 0.00 4.39 5.60 3.95 12.91 0.00 0.00 4.27 50 E5b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER5c ExonRegion 1 5.20 8.73 4.89 5.91 9.53 7.14 10.04 1.37 2.01 2.09 1.81 8.97 16.95 4.96 5.02 1.64 4.30 4.75 5.34 10.26 2.23 0.00 11.81 52 E5c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 I5 Intron 0 3.69 0.79 5.31 5.91 6.75 8.18 11.04 4.99 3.21 2.65 4.87 8.44 23.18 7.26 4.60 8.07 7.04 9.09 4.32 3.71 5.12 3.23 6.83 54 I5_SR1 SilentIntronRegion 0 3.75 0.86 5.60 6.26 6.77 8.31 11.38 5.27 3.21 2.76 5.11 8.51 21.95 7.38 4.79 8.45 7.39 8.82 4.30 3.92 5.45 3.52 6.74 55 I5_SR2 SilentIntronRegion 0 3.12 0.00 2.19 2.01 6.20 6.47 7.18 2.00 3.19 1.27 2.24 7.98 34.80 5.56 2.75 4.07 3.13 11.96 4.53 1.23 1.62 0.00 7.57 56 E6_Aa NovelBoundary 0 48.75 20.52 32.79 34.16 14.52 22.20 67.52 23.74 39.03 24.15 24.90 36.46 19.97 13.36 9.64 31.44 23.66 36.60 25.32 19.81 12.73 10.78 27.66 57 ER6a ExonRegion 1 95.35 125.75 8.27 25.45 114.30 76.39 179.19 22.98 10.40 15.72 37.90 64.11 97.50 49.49 71.24 109.25 77.59 42.89 74.10 139.18 74.95 34.62 120.40 58 E6_Da KnownBoundary 0 489.05 661.07 355.16 478.23 525.81 511.47 705.76 356.60 310.01 368.60 236.80 210.97 161.68 148.98 226.71 487.39 478.17 431.78 373.19 666.78 520.10 265.20 502.79 59 ER6b ExonRegion 1 15.04 6.00 3.78 1.63 7.38 5.13 15.77 3.39 0.94 2.67 3.23 1.01 17.08 4.37 2.37 8.92 4.71 10.76 0.99 6.18 3.57 5.40 6.59 60 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER7a ExonRegion 0 362.13 847.50 970.85 728.56 1338.83 1733.59 543.04 472.46 314.73 378.07 766.33 199.39 210.73 662.97 690.74 865.99 588.10 628.64 884.40 399.12 572.66 468.96 694.42 62 E7_Da KnownBoundary 1 291.98 1049.62 1060.49 832.36 2011.29 3181.63 1223.62 446.19 326.96 349.80 824.89 143.30 149.34 558.31 459.36 447.75 578.96 352.48 683.41 379.09 637.97 343.46 303.72 63 ER7b ExonRegion 0 668.64 1602.01 1162.82 1045.24 945.64 1141.98 836.86 498.78 345.71 444.07 866.83 408.28 386.95 680.18 651.51 460.65 512.81 354.34 768.42 404.58 416.10 509.84 452.71 64 E7_Db KnownBoundary 0 1356.39 2074.24 1904.55 1849.55 831.07 1012.09 799.83 606.09 517.70 607.38 890.54 379.62 485.20 879.46 920.33 489.10 484.62 532.14 1107.89 516.13 430.65 591.70 587.90 65 ER7c ExonRegion 0 592.80 1964.23 1336.84 1121.25 700.68 849.82 703.81 527.91 398.76 455.96 854.31 641.76 418.64 666.93 821.57 482.99 584.44 333.83 760.66 444.73 552.57 512.00 474.92 66 E7_Dc KnownBoundary 0 510.31 2145.87 1622.53 1490.82 936.33 1169.89 1093.87 629.09 451.15 522.38 752.30 307.45 373.35 596.74 887.45 455.86 525.10 403.76 878.14 396.99 325.75 524.34 433.22 67 ER7d ExonRegion 0 379.61 1340.61 923.48 878.09 539.20 517.54 465.24 360.93 301.60 305.44 511.00 267.62 294.70 348.07 553.47 244.27 310.38 157.02 501.67 261.66 185.66 411.08 271.64 68 E7_Dd KnownBoundary 0 49.19 204.31 32.38 17.05 22.41 41.57 29.63 18.20 6.83 19.61 8.48 7.65 5.68 7.00 4.45 6.84 0.00 0.00 8.00 4.79 5.19 2.51 6.74 69 E7_De KnownBoundary 0 16.52 36.24 21.47 16.25 29.29 8.01 8.39 28.09 4.37 12.25 2.68 6.30 13.64 2.12 4.45 0.00 0.00 2.24 0.00 3.20 0.00 21.92 0.00 70 ER7e ExonRegion 1 141.81 260.30 70.83 43.07 86.16 64.18 66.46 56.00 23.22 51.84 30.93 33.77 65.66 24.36 42.94 6.54 11.22 4.43 10.83 25.96 1.76 31.67 10.57 71 ER7f ExonRegion 1 17.61 35.26 29.38 40.31 33.42 17.86 16.68 27.54 12.89 16.89 5.15 30.31 50.93 4.49 8.39 6.51 5.65 3.79 17.05 18.42 2.41 16.27 8.62 72 ER8a ExonRegion 0 5.66 0.96 2.01 5.75 3.37 4.04 10.41 4.87 2.32 2.40 5.16 5.01 1.22 4.01 5.02 4.79 2.60 10.68 5.01 12.84 2.43 3.70 4.16 73 IG30 Intergenic 0 2.92 3.74 3.46 7.48 6.02 3.94 12.87 4.08 5.08 2.97 4.55 13.99 16.56 6.40 3.76 6.99 5.91 5.79 7.01 9.90 2.14 2.34 6.16 74 IG30_AR1 ActiveIntergenicRegion 0 2.93 3.75 3.46 7.50 6.03 3.95 12.89 4.09 5.09 2.98 4.56 14.02 16.59 6.41 3.77 7.01 5.92 5.80 7.02 9.92 2.15 2.35 6.17