Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPM1G Gene 0 217.34 206.06 587.25 229.29 243.58 290.79 261.56 269.41 167.81 351.84 533.25 241.72 207.72 518.04 526.78 414.44 423.96 323.47 356.20 249.64 195.61 150.93 123.75 2 344034 Transcript 0 5.29 5.68 3.13 0.00 3.13 11.83 6.08 2.00 1.20 4.03 8.87 0.00 0.53 9.16 9.50 6.46 3.33 6.64 6.16 2.77 4.42 3.21 4.45 3 350803 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 484925 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 472077 Transcript 0 14.66 8.55 17.61 11.40 20.16 15.90 23.06 17.35 12.31 13.65 11.37 13.11 15.63 16.08 15.87 15.76 15.36 10.34 10.59 14.91 2.73 4.95 4.40 6 395543 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 6.35 7.29 1.35 0.00 3.58 14.50 12.17 2.27 1.17 2.33 11.94 0.00 1.06 16.70 16.09 9.95 6.66 11.44 9.14 5.54 6.63 6.43 8.89 8 E1_Ac KnownBoundary 0 49.86 28.61 8.75 0.00 44.48 131.17 92.12 11.17 4.40 10.13 48.75 0.00 6.82 172.58 155.39 49.39 39.27 26.20 40.10 32.79 31.51 23.82 51.22 9 E1_Ad KnownBoundary 1 149.73 143.00 48.14 8.96 124.11 347.81 276.94 44.85 28.82 65.38 252.43 0.00 0.00 225.15 115.95 271.47 122.30 205.77 80.38 93.26 84.39 81.32 114.30 10 ER1b ExonRegion 1 58.96 51.71 18.73 0.00 53.51 163.73 123.88 15.56 6.70 23.59 117.63 0.00 4.69 176.10 130.56 95.96 73.56 44.08 60.52 40.43 45.02 36.91 72.16 11 ER1c ExonRegion 1 70.42 72.65 29.07 2.73 65.43 215.39 168.74 18.54 12.58 36.49 152.87 0.00 4.69 225.01 150.34 130.77 92.73 43.00 63.71 58.99 64.91 47.16 82.76 12 ER1d ExonRegion 1 80.90 86.31 39.76 5.30 78.19 245.93 193.00 21.89 15.51 52.89 184.05 0.00 0.00 261.12 163.11 149.60 119.20 45.37 66.89 70.69 75.17 49.77 88.43 13 ER1e ExonRegion 1 76.52 84.33 73.79 15.05 63.68 219.08 178.15 29.92 19.05 90.43 167.22 2.12 0.00 206.15 135.84 98.01 149.57 34.20 45.02 87.61 57.30 42.60 51.75 14 E1_Ae KnownBoundary 0 50.01 65.71 106.86 37.02 47.96 134.58 130.32 39.97 22.19 111.58 85.92 12.00 0.00 63.28 85.17 44.69 122.58 29.27 36.52 71.72 34.66 20.39 7.85 15 ER1f ExonRegion 1 31.84 86.50 147.29 37.32 37.71 54.03 58.65 51.20 35.66 126.44 212.72 13.03 17.94 262.19 208.27 129.88 156.13 97.41 86.77 94.58 90.23 67.56 41.71 16 E1b_E2a KnownJunction 1 45.05 310.54 414.56 151.63 167.23 175.52 221.70 165.77 142.16 268.38 374.62 46.67 137.65 438.52 428.33 336.75 275.74 310.15 224.95 265.83 161.18 139.67 112.51 17 ER2a ExonRegion 0 89.92 294.08 549.75 226.63 298.50 356.96 347.65 217.69 188.04 397.14 578.74 133.16 115.84 567.21 445.63 365.57 396.67 345.37 314.62 315.96 204.91 164.57 112.47 18 E2_Da KnownBoundary 0 23.49 6.38 31.10 15.68 21.65 46.22 52.33 12.73 11.20 16.06 9.69 0.00 0.00 30.26 15.95 38.54 18.98 15.13 17.69 21.67 2.97 14.70 10.84 19 E2a_E2b KnownJunction 1 179.51 343.89 782.32 305.92 509.42 718.05 613.64 324.07 221.47 551.02 828.58 204.22 127.75 899.53 479.02 460.90 455.35 444.01 373.09 379.09 228.51 213.46 122.15 20 ER2b ExonRegion 0 18.54 16.85 22.95 11.02 23.76 17.49 34.81 15.35 14.61 19.58 9.10 23.32 30.72 25.54 35.62 34.53 25.19 21.21 23.25 30.79 9.52 7.92 26.46 21 E2_Db KnownBoundary 0 1077.89 1355.48 385.44 474.50 869.10 821.35 1377.30 482.13 471.90 333.60 438.48 451.95 479.03 418.86 674.46 1368.19 988.59 735.26 1199.94 1439.73 638.41 525.32 923.80 22 ER2c ExonRegion 0 18.27 10.79 17.99 8.99 21.03 16.34 24.37 17.16 7.41 11.89 11.56 12.11 17.41 17.05 23.61 18.33 17.34 9.94 10.83 17.02 2.83 6.01 6.15 23 E2_Ab KnownBoundary 0 13.48 0.00 7.78 6.89 12.05 32.71 37.10 19.47 16.78 4.43 2.21 17.56 6.82 10.07 19.16 23.67 15.99 1.91 3.95 17.83 0.00 0.00 0.00 24 ER2d ExonRegion 0 172.76 367.46 1065.89 405.82 344.29 517.22 516.33 486.67 302.08 679.66 1195.96 287.17 259.99 1079.49 710.57 660.83 778.70 593.87 732.60 563.00 331.28 310.59 204.70 25 E2_Dc KnownBoundary 0 22.00 10.00 6.65 8.16 3.14 0.00 8.26 10.93 6.86 8.11 10.63 23.56 0.00 3.00 0.00 12.56 17.58 18.36 12.33 18.92 5.07 0.00 12.80 26 E2c_E2c KnownJunction 0 374.96 463.08 1312.02 540.66 386.25 383.59 472.32 559.76 368.31 779.05 1263.95 285.54 294.14 1243.16 1094.01 735.02 838.43 664.46 1000.88 694.27 420.70 437.51 201.03 27 ER2e ExonRegion 0 6.84 3.69 16.74 10.93 8.47 9.01 13.76 12.61 11.05 10.19 9.64 8.30 7.09 9.40 10.28 11.93 11.56 12.00 8.84 11.10 2.55 2.78 4.61 28 E2_Ac KnownBoundary 0 13.78 5.99 24.33 18.98 0.00 4.88 25.57 16.84 13.83 9.62 10.11 12.00 6.82 16.89 0.00 3.76 18.14 5.51 0.00 8.63 0.00 2.33 3.50 29 ER2f ExonRegion 0 285.26 363.63 1034.27 431.65 401.50 408.87 392.31 512.08 320.18 740.39 1083.99 476.83 294.37 1118.18 780.99 745.37 855.01 638.13 694.00 542.95 380.24 321.67 212.80 30 E2_Dd KnownBoundary 0 14.00 5.92 7.04 22.18 27.42 7.55 30.78 24.32 15.94 29.28 14.58 7.35 19.15 15.30 15.20 13.93 17.95 14.22 0.00 8.18 2.35 3.00 0.00 31 E2d_E2e KnownJunction 0 382.07 577.00 1293.95 525.57 665.62 618.39 604.54 670.33 317.71 775.50 1340.13 808.76 422.05 1536.24 1082.27 1174.22 1043.94 829.19 1241.64 681.10 481.49 550.73 361.00 32 ER2g ExonRegion 0 18.86 11.19 18.09 14.28 30.99 22.36 31.04 22.27 18.47 18.88 12.91 18.91 22.38 21.80 13.73 17.03 17.17 9.07 12.09 16.62 2.81 6.06 2.43 33 E2_Ad KnownBoundary 0 38.08 12.04 18.95 9.59 59.17 13.57 14.97 17.13 8.22 20.63 12.42 6.30 6.49 12.42 10.75 14.70 16.55 19.61 37.08 15.47 0.00 2.27 0.00 34 E2_Ae KnownBoundary 0 21.49 0.00 21.35 4.06 3.40 11.36 12.63 28.42 8.22 9.51 11.69 0.00 13.64 23.84 23.86 15.98 9.07 16.79 31.53 2.68 0.00 5.33 13.06 35 ER2h ExonRegion 0 51.80 31.15 91.39 36.15 52.53 45.07 40.14 64.04 30.42 60.12 80.16 43.52 34.80 96.59 79.25 68.67 68.10 74.01 106.46 43.00 24.70 30.49 25.50 36 ER2i ExonRegion 0 242.01 396.73 1061.00 406.27 402.14 533.68 461.52 464.98 295.08 673.86 951.16 478.43 348.97 1004.63 781.72 752.29 815.23 734.55 820.72 488.68 385.16 334.75 206.50 37 E2_De KnownBoundary 0 264.57 432.29 975.36 367.15 474.02 609.71 635.77 385.60 247.39 643.99 921.02 344.96 255.18 871.74 758.39 620.95 711.45 544.61 476.44 440.39 362.51 214.68 136.15 38 E2e_E2f KnownJunction 0 3.48 0.00 9.14 11.82 4.07 0.00 4.15 2.55 11.28 15.18 43.85 24.91 6.17 36.73 8.90 12.73 33.57 2.45 3.58 6.14 2.97 3.12 7.34 39 ER2j ExonRegion 0 229.83 359.30 995.66 369.14 440.13 552.21 497.73 409.36 304.41 643.31 911.26 335.93 210.60 984.64 829.58 703.06 689.47 648.73 544.76 470.76 369.13 251.33 195.77 40 E2_Af KnownBoundary 0 395.63 437.95 1193.33 386.33 295.25 546.79 522.80 428.07 322.62 728.39 1076.22 288.84 322.71 915.60 895.61 609.58 852.45 630.75 458.65 550.52 348.42 210.70 192.84 41 ER2k ExonRegion 0 355.55 396.16 1168.55 432.63 474.35 665.51 517.12 454.05 318.21 676.31 1161.20 347.28 433.33 1120.50 913.99 741.77 960.88 745.88 621.28 554.03 430.64 222.01 223.40 42 E2f_E3a KnownJunction 0 599.14 413.74 1415.62 542.46 679.29 786.82 721.62 570.35 423.55 754.28 1310.65 335.96 425.62 1105.60 1266.58 947.19 966.99 933.53 880.12 609.13 441.58 289.08 310.29 43 ER3a ExonRegion 0 439.27 449.19 1411.33 550.96 597.13 739.39 633.12 584.94 405.64 788.62 1368.29 459.08 573.55 1326.15 1316.37 1022.45 1141.17 867.00 951.59 631.26 506.56 321.45 359.29 44 E3a_E4a KnownJunction 0 257.90 566.68 1687.11 696.78 504.92 669.33 660.10 768.78 450.11 910.11 1460.21 663.67 729.50 1287.84 1476.61 1140.38 1212.71 1007.65 1074.57 758.82 561.87 360.85 379.52 45 E3a_E5a NovelJunction 0 3.11 5.53 4.94 0.00 8.57 0.00 5.39 4.72 4.60 1.40 4.69 0.00 0.00 2.47 9.02 8.54 0.00 2.57 14.02 0.00 0.00 2.76 0.00 46 I3_AR2 ActiveIntronRegion 0 47.70 18.45 23.75 14.87 51.96 60.34 29.99 33.66 14.96 20.78 23.66 17.12 12.27 28.49 21.08 48.45 43.59 19.49 24.81 15.45 4.83 11.58 11.40 47 ER4a ExonRegion 0 599.63 502.96 1536.73 650.19 705.54 773.25 671.87 718.43 423.31 923.99 1437.07 766.87 693.39 1251.28 1332.14 1112.13 1214.38 937.97 939.80 653.19 534.99 406.37 351.82 48 E4a_E5a KnownJunction 0 670.56 608.90 1788.20 750.15 767.06 858.94 778.19 836.76 422.88 960.45 1542.97 994.07 891.18 1411.74 1275.11 1116.63 1296.59 956.79 1123.23 589.83 505.83 447.13 358.01 49 E4a_E6a NovelJunction 0 7.56 12.10 31.46 7.29 3.65 2.38 4.15 1.93 4.34 11.31 12.21 0.00 0.00 20.43 0.00 7.78 4.21 10.82 4.80 8.56 0.00 0.00 0.00 50 ER5a ExonRegion 0 878.34 754.93 1707.16 680.98 733.55 933.29 871.25 779.76 464.28 944.96 1423.33 882.91 560.17 1221.30 1310.25 1108.72 1188.40 969.78 888.18 685.89 489.87 422.62 293.75 51 E5_Da NovelBoundary 0 115.43 33.09 62.74 26.47 42.95 29.98 27.47 45.22 17.45 40.29 14.69 25.21 13.31 9.71 61.69 66.65 22.72 53.52 20.42 32.53 0.00 11.51 10.33 52 E5a_E6a KnownJunction 0 861.04 715.66 1946.03 788.58 1044.57 1328.16 1249.50 845.47 460.50 942.80 1358.24 662.32 437.63 958.45 1392.18 1115.78 1189.62 987.25 772.54 756.08 430.71 310.52 279.05 53 I5 Intron 0 55.50 23.93 33.93 20.13 24.86 29.53 24.60 19.15 8.74 19.41 15.96 9.73 5.81 21.01 25.76 38.05 13.63 22.00 12.50 20.65 5.01 1.72 7.28 54 I5_AR1 ActiveIntronRegion 0 55.92 24.13 34.21 20.28 25.06 29.77 24.79 19.30 8.81 19.57 16.09 9.81 5.86 21.17 25.97 38.35 13.74 22.16 12.60 20.82 5.05 1.73 7.34 55 ER6a ExonRegion 0 469.97 542.91 1804.75 706.33 851.51 994.65 827.13 810.38 448.75 907.81 1376.99 820.41 772.58 1289.57 1460.96 1187.21 1066.83 799.14 914.51 691.32 465.60 372.85 350.00 56 E6a_E7a KnownJunction 1 390.51 491.82 2070.71 738.57 459.34 579.38 614.39 970.21 518.54 1049.42 1010.41 899.39 843.13 1356.12 1719.76 1660.76 765.87 880.01 1210.58 680.01 394.82 450.80 502.79 57 ER7a ExonRegion 0 518.70 340.18 1094.44 406.11 370.41 428.44 371.17 523.14 300.13 622.68 917.33 426.37 361.83 886.21 1158.52 773.74 686.32 457.72 664.92 347.97 340.11 269.61 211.17 58 ER7b ExonRegion 0 17.99 17.29 23.08 9.31 19.62 33.93 12.36 10.37 6.18 16.06 28.35 0.00 3.91 33.84 29.50 18.82 12.65 6.16 19.64 11.70 9.55 3.47 1.96 59 ER7c ExonRegion 0 4.23 4.07 4.90 0.00 2.68 9.17 0.00 1.73 1.24 5.73 5.80 0.00 0.00 1.62 2.90 2.97 0.00 1.85 3.19 0.00 2.20 0.00 0.00