Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAPRE3 Gene 0 26.06 81.56 188.41 83.03 87.11 200.14 64.55 149.22 218.89 138.83 19.92 18.87 15.52 4.11 9.63 10.87 3.99 116.50 108.54 115.00 55.94 50.41 52.95 2 233121 Transcript 0 0.00 0.23 0.00 0.00 0.00 5.22 1.94 0.00 0.57 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.47 3 494788 Transcript 0 2.31 3.86 5.71 3.96 5.85 12.94 9.13 14.36 14.62 10.83 1.06 4.82 2.96 1.37 1.41 6.84 1.20 8.48 1.35 18.86 4.01 4.29 1.60 4 405074 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 475633 Transcript 0 13.26 22.28 73.28 35.46 32.22 99.20 31.70 84.49 112.98 54.22 5.61 11.30 11.90 2.22 6.65 7.18 3.30 27.13 35.69 42.76 18.45 25.15 27.34 6 481222 Transcript 0 0.59 2.28 0.00 0.00 0.75 1.54 0.74 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.89 3.55 0.00 0.00 0.00 7 491354 Transcript 0 0.12 1.50 1.00 0.93 1.13 2.09 3.19 1.42 2.85 2.08 0.59 0.87 0.59 0.24 0.39 0.85 0.31 1.75 1.57 4.33 0.67 1.09 0.78 8 474367 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.53 0.00 0.00 0.00 9 458529 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 402218 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 ER1a ExonRegion 0 0.00 0.23 0.00 0.00 0.00 5.22 1.94 0.00 0.57 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.47 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 3.48 13.40 6.54 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 4.18 13 E1_Ad KnownBoundary 0 18.37 30.32 5.12 0.00 24.02 103.46 32.81 5.05 8.13 8.57 4.21 0.00 0.00 0.00 0.00 0.00 3.55 14.55 15.34 12.72 10.26 17.27 3.41 14 ER1b ExonRegion 0 4.43 12.10 2.28 0.19 10.32 50.21 14.44 1.56 4.23 3.77 1.29 0.00 0.00 0.00 0.14 0.00 0.79 8.45 9.10 3.14 5.14 5.36 4.75 15 ER1c ExonRegion 0 14.82 35.25 6.13 1.82 35.68 130.20 34.86 5.19 12.76 6.88 3.87 0.00 0.00 0.00 2.90 0.00 3.30 20.33 31.85 13.48 18.36 18.06 12.73 16 ER1d ExonRegion 0 20.50 53.16 26.14 6.67 25.43 129.64 34.39 21.86 32.10 32.47 5.91 0.00 0.00 0.97 4.67 3.23 1.03 38.33 56.48 33.85 25.12 27.93 24.33 17 E1a_E5a KnownJunction 0 14.30 26.77 69.13 20.94 29.03 54.74 20.76 53.27 81.74 56.87 7.16 0.00 0.00 0.00 0.00 0.00 0.00 28.98 30.49 77.02 50.84 14.33 8.71 18 ER2a ExonRegion 0 1.19 4.56 0.00 0.00 1.50 3.08 1.48 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.05 1.79 7.11 0.00 0.00 0.00 19 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 0.48 1.39 1.24 1.39 2.44 0.00 6.31 1.76 5.86 1.17 0.88 0.81 0.88 0.00 0.00 0.00 0.00 3.14 1.45 7.75 1.00 0.47 2.01 21 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.53 0.00 0.00 0.00 23 E4_Ac KnownBoundary 0 0.00 0.00 3.87 3.30 3.74 0.00 5.83 2.55 4.60 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.57 0.00 6.01 0.00 0.00 0.00 24 ER4b ExonRegion 0 0.00 0.00 1.62 0.00 0.00 0.00 0.64 1.73 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.48 0.00 1.85 0.00 2.75 0.43 0.00 0.00 25 ER4c ExonRegion 0 0.00 1.68 2.25 1.11 1.48 2.02 5.73 2.52 1.52 1.41 0.53 1.59 0.00 0.32 0.56 1.56 0.00 0.43 0.00 7.74 2.95 0.00 0.00 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 33.42 132.71 211.62 88.84 68.27 127.02 61.49 189.16 248.49 176.25 21.04 9.67 7.69 5.11 9.29 10.50 7.56 114.26 147.37 179.17 77.34 70.32 54.65 28 E5_Da KnownBoundary 0 0.00 9.01 7.84 1.76 0.00 8.69 8.08 11.01 14.81 10.37 0.00 0.00 0.00 2.47 4.45 4.27 0.00 13.76 9.04 11.38 0.00 2.82 0.00 29 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E5a_E7a KnownJunction 0 35.64 241.08 341.06 118.67 169.02 273.25 149.00 307.60 356.54 267.09 29.06 25.51 20.45 2.47 0.00 7.78 4.49 124.69 122.07 235.73 114.35 71.77 60.78 31 ER5b ExonRegion 0 2.31 3.86 5.71 3.96 5.85 12.94 9.13 14.36 14.62 10.83 1.06 4.82 2.96 1.37 1.41 6.84 1.20 8.48 1.35 18.86 4.01 4.29 1.60 32 ER6a ExonRegion 0 0.00 4.60 2.76 2.32 2.08 8.35 6.45 3.92 5.56 7.16 1.47 2.68 1.47 0.95 1.56 3.39 1.26 3.85 4.85 9.56 1.66 3.90 1.12 33 E6_Da NovelBoundary 0 13.71 11.51 4.41 1.63 16.04 26.92 28.09 16.31 21.76 13.73 0.00 0.00 12.66 0.00 5.07 3.33 0.00 9.41 16.75 12.27 15.07 2.94 11.52 34 ER7a ExonRegion 0 36.62 225.98 417.79 190.37 195.53 464.52 155.33 404.00 549.47 361.55 47.01 44.78 41.02 3.30 18.40 19.75 12.25 242.30 197.30 269.37 119.14 102.49 95.02 35 E7_Da KnownBoundary 0 10.00 51.50 165.25 109.88 18.68 55.08 22.92 108.07 178.99 111.53 11.32 0.00 13.31 2.24 21.88 30.42 8.51 101.52 51.11 116.90 47.32 46.90 56.77 36 E7a_E7b KnownJunction 0 46.30 193.98 465.15 219.59 228.95 269.84 93.05 501.19 601.38 412.87 62.81 48.77 59.41 9.18 6.30 24.52 17.77 238.15 307.30 243.84 114.23 150.45 98.08 37 E7a_E8a NovelJunction 0 0.00 3.29 21.67 0.00 3.31 0.00 3.93 5.54 8.88 5.67 2.68 0.00 0.00 0.00 0.00 0.00 0.00 2.03 12.80 6.01 0.00 0.00 0.00 38 ER7b ExonRegion 0 3.38 37.10 120.88 66.33 15.96 66.82 22.44 108.10 147.50 96.52 8.41 12.84 12.67 6.21 12.52 14.60 6.37 85.74 49.07 83.39 41.72 38.38 48.69 39 E7_Db KnownBoundary 0 3.33 25.00 93.02 44.88 11.63 113.68 43.32 108.27 144.21 89.07 7.74 18.16 0.00 2.47 13.35 3.50 4.77 72.88 58.64 60.02 31.57 30.25 63.00 40 ER7c ExonRegion 0 17.06 30.21 100.95 40.08 43.44 93.26 32.54 96.04 121.92 68.14 7.98 10.91 9.28 1.91 8.73 5.83 0.67 67.80 45.61 57.81 36.81 27.11 38.96 41 E7_Dc KnownBoundary 1 29.86 17.83 66.44 18.51 49.24 146.45 32.90 59.48 93.49 51.60 0.00 19.51 6.49 0.00 8.90 0.00 3.93 22.88 40.85 47.30 19.95 13.84 19.80 42 ER7d ExonRegion 0 13.26 22.28 73.28 35.46 32.22 99.20 31.70 84.49 112.98 54.22 5.61 11.30 11.90 2.22 6.65 7.18 3.30 27.13 35.69 42.76 18.45 25.15 27.34 43 E7_Ab KnownBoundary 0 11.71 48.08 129.36 58.53 86.42 119.99 64.61 127.86 173.03 82.06 9.74 18.01 7.47 2.35 13.35 0.00 9.54 30.18 64.75 41.93 16.74 31.54 33.12 44 ER7e ExonRegion 0 78.84 234.24 540.60 263.83 290.56 481.60 162.18 555.62 764.04 499.69 72.45 91.75 61.80 9.16 14.48 33.72 18.67 362.13 337.37 294.88 138.11 195.02 166.80 45 E7_Dd KnownBoundary 0 82.53 266.14 515.36 252.05 258.15 475.29 221.83 495.39 720.88 467.13 56.80 76.22 91.71 21.54 14.46 29.14 13.18 354.47 225.61 289.99 109.96 145.67 137.95 46 E7_De KnownBoundary 0 20.00 63.34 229.35 137.08 105.01 245.60 63.11 86.63 197.83 124.16 43.85 29.71 46.59 4.59 4.45 31.27 3.93 158.68 169.32 77.34 101.13 91.91 80.41 47 E7e_E8a KnownJunction 0 53.34 316.72 328.37 114.70 287.52 382.28 156.65 318.20 472.54 249.47 11.53 12.60 18.83 2.47 12.36 4.36 0.00 145.38 159.25 152.89 25.51 52.05 37.05 48 ER7f ExonRegion 0 52.78 275.32 513.31 239.69 273.96 495.42 191.46 419.68 670.39 404.41 56.93 61.03 70.96 11.74 21.99 34.99 6.60 345.41 272.40 252.92 127.89 155.19 128.83 49 ER7g ExonRegion 0 27.80 103.44 206.71 135.71 123.80 315.01 87.79 84.54 190.87 153.66 46.56 38.39 56.28 3.93 16.89 20.54 2.93 190.28 132.51 103.59 149.22 132.93 108.66 50 E7_Df NovelBoundary 0 3.78 11.91 44.44 20.51 26.74 78.42 39.57 34.87 30.06 32.66 7.79 6.15 0.00 2.12 0.00 11.36 0.00 22.92 25.60 35.41 8.15 8.27 14.85 51 E7f_E8a KnownJunction 1 56.60 165.50 193.90 143.87 179.03 447.02 156.95 79.52 171.61 152.07 30.17 42.91 73.05 2.47 15.20 15.72 0.00 200.01 103.63 166.63 168.65 139.31 141.79 52 I7 Intron 0 13.03 23.98 85.85 38.92 29.62 69.31 25.42 72.68 71.64 61.92 7.55 4.49 3.89 2.95 5.61 5.74 3.19 50.61 27.31 36.74 17.29 14.43 22.69 53 I7_AR1 ActiveIntronRegion 0 11.88 20.06 82.61 36.14 31.08 68.90 29.44 69.18 62.96 58.37 7.85 5.48 1.85 2.23 6.10 4.51 1.73 44.27 24.02 31.80 14.12 16.87 22.13 54 I7_SR1 SilentIntronRegion 0 15.86 27.24 100.26 45.54 31.81 77.48 24.94 84.55 86.67 75.27 7.80 4.39 5.06 3.73 5.07 7.49 4.29 61.15 33.44 43.32 20.11 16.35 25.42 55 I7_AR2 ActiveIntronRegion 0 6.46 20.73 48.17 23.69 20.83 45.79 20.53 43.03 40.89 27.73 6.34 3.22 3.68 1.78 6.51 2.51 2.26 29.46 14.34 25.20 14.09 4.73 15.55 56 E8_Aa NovelBoundary 0 34.75 85.58 119.63 48.15 58.83 159.45 37.27 60.21 76.94 57.94 5.11 0.00 6.82 4.59 20.27 3.33 4.11 58.95 20.99 32.79 21.13 6.25 54.21 57 ER8a ExonRegion 0 74.73 310.98 488.07 192.09 318.52 631.19 203.19 364.70 530.37 325.55 44.31 63.13 48.84 9.72 25.01 26.73 9.18 323.15 315.62 267.85 143.90 137.92 150.32 58 E8a_E9a KnownJunction 1 33.34 142.47 522.75 201.41 333.11 500.22 163.76 399.73 577.54 320.09 33.59 69.92 46.91 10.48 24.85 19.14 4.58 226.92 229.28 344.32 143.01 93.56 155.02 59 ER9a ExonRegion 0 43.67 119.37 500.03 207.02 207.19 399.03 125.73 368.22 553.50 314.06 48.45 43.73 52.37 8.99 16.44 22.09 4.84 252.34 204.61 318.44 146.99 102.58 120.11 60 ER9b ExonRegion 0 65.68 169.76 659.51 285.91 203.36 461.34 154.29 470.10 633.62 396.33 57.89 41.01 30.50 9.59 20.66 27.35 5.05 358.96 311.18 346.60 139.10 122.61 127.42 61 E9_Db NovelBoundary 0 0.00 2.63 6.45 1.47 3.48 2.16 6.23 8.09 7.12 0.00 0.00 6.30 6.82 2.41 11.99 7.69 0.00 11.07 8.56 5.88 0.00 2.88 4.35 62 E9b_E10a KnownJunction 0 148.99 324.48 739.36 314.48 256.54 802.44 276.33 501.68 738.48 436.94 79.34 43.96 40.91 11.30 10.75 15.55 0.00 403.88 441.24 413.80 146.10 104.65 198.04 63 ER10a ExonRegion 0 54.83 169.94 438.41 173.80 190.26 554.31 178.89 313.99 469.08 294.01 47.31 58.73 59.92 7.65 18.13 22.64 3.65 274.85 217.48 261.87 116.85 91.70 115.65 64 E10_Da KnownBoundary 1 27.49 137.61 438.57 197.28 124.19 341.45 130.15 353.20 474.27 302.17 21.22 65.27 13.64 7.36 18.54 33.67 4.58 338.67 150.78 161.45 56.96 111.32 90.40 65 ER10b ExonRegion 0 35.11 89.87 237.60 105.44 104.85 270.41 76.04 155.09 262.99 167.74 25.13 15.02 10.99 6.76 13.32 11.67 4.87 141.77 148.11 145.37 70.66 54.32 63.77 66 IG2_AR2 ActiveIntergenicRegion 0 3.48 2.39 7.02 3.60 5.86 14.76 4.72 3.89 7.38 2.87 6.68 1.57 2.59 12.41 8.74 6.56 5.13 1.12 3.21 1.57 1.34 1.53 1.98 67 IG2_SR2 SilentIntergenicRegion 0 5.57 3.29 4.43 7.40 3.79 11.50 5.09 4.69 7.08 6.23 12.13 8.71 4.69 13.79 10.05 7.82 9.35 4.46 5.80 6.03 1.34 0.84 2.38