Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC093642.6 Gene 0 38.31 74.24 8.61 13.68 19.89 29.36 21.10 41.29 30.19 35.24 3.21 3.01 2.22 5.09 3.20 6.27 8.44 54.07 69.50 63.23 6.61 4.39 6.19 2 429456 Transcript 0 15.21 32.23 6.57 12.68 12.21 14.31 13.67 26.53 11.32 19.99 1.17 0.69 0.59 3.15 1.29 3.92 2.71 29.41 37.42 26.61 1.76 1.78 1.61 3 426962 Transcript 0 26.07 43.19 3.33 4.72 8.62 14.58 7.20 23.16 13.08 13.33 2.92 0.97 0.52 3.44 2.42 4.30 2.15 18.44 21.12 20.39 3.69 1.82 1.79 4 451070 Transcript 0 25.94 45.51 3.14 6.29 10.72 18.79 11.34 9.51 13.27 13.77 3.96 3.05 3.32 3.02 2.13 5.09 3.33 14.14 35.12 27.79 4.19 4.05 5.19 5 ER1a ExonRegion 0 49.68 72.87 9.07 15.10 25.64 41.12 32.42 50.90 30.07 35.39 3.47 2.75 2.97 5.44 4.43 9.41 11.30 53.68 52.88 50.42 5.85 6.24 7.54 6 E1_Ab NovelBoundary 0 20.00 2.50 8.37 13.05 8.66 0.00 3.71 25.51 20.80 22.86 4.84 0.00 0.00 2.47 0.00 0.00 3.93 26.24 17.51 7.41 0.00 0.00 3.33 7 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 7.06 13.56 2.86 1.36 2.68 6.11 5.74 8.07 5.76 2.29 0.00 0.00 0.00 0.00 2.90 0.99 0.00 3.08 18.05 2.84 2.20 0.00 0.00 9 ER1c ExonRegion 0 64.94 85.35 10.10 16.31 28.55 34.84 21.14 57.44 33.74 33.47 6.83 3.87 2.10 6.70 6.76 13.66 8.50 56.08 66.32 59.46 8.23 5.43 5.22 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1d ExonRegion 0 40.07 52.55 12.76 20.58 9.04 11.97 20.24 50.64 18.53 39.10 2.09 0.00 1.99 2.73 3.23 4.78 9.86 47.68 41.89 44.07 4.79 2.08 2.84 12 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1b_E2b NovelJunction 0 17.19 15.06 0.00 0.00 0.00 2.90 0.00 13.31 13.86 6.15 2.68 0.00 0.00 0.00 0.00 0.00 0.00 7.42 4.80 6.33 0.00 0.00 0.00 14 E1_Dc NovelBoundary 0 10.22 17.89 0.00 5.83 8.66 5.39 2.25 4.39 6.57 7.44 0.00 0.00 0.00 0.00 5.32 8.72 0.00 25.74 18.64 18.22 0.00 0.00 0.00 15 E1c_E2a NovelJunction 0 0.00 32.23 3.28 4.79 0.00 0.00 10.60 4.27 1.68 5.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.95 13.27 3.00 0.00 2.69 0.00 16 E1c_E2b KnownJunction 0 0.00 15.00 6.48 13.05 17.15 0.00 6.14 8.46 0.00 20.01 0.00 0.00 0.00 2.18 0.00 3.33 0.00 23.46 34.64 2.68 0.00 0.00 0.00 17 ER1e ExonRegion 0 2.25 24.40 11.03 16.71 8.29 3.37 16.44 13.27 0.36 21.35 0.00 0.00 0.76 2.93 3.09 2.97 0.85 32.66 44.80 8.72 0.71 1.68 0.00 18 E2_Ab NovelBoundary 0 3.78 5.85 1.18 1.40 0.00 0.00 2.25 0.00 1.71 2.95 0.00 0.00 0.00 0.00 0.00 4.19 0.00 18.65 17.32 6.52 0.00 5.69 6.83 19 ER2a ExonRegion 0 16.58 16.27 3.06 2.27 1.34 5.50 2.21 25.93 12.35 12.62 4.19 0.00 0.00 3.79 2.90 0.50 0.00 7.39 10.62 13.83 4.77 0.00 1.96 20 ER2b ExonRegion 0 19.00 42.48 9.83 16.73 5.38 9.90 6.74 57.38 14.23 30.41 3.22 0.00 0.00 6.15 1.58 5.02 7.34 27.53 54.86 35.51 3.13 0.79 0.00 21 E2_Da KnownBoundary 0 23.49 48.35 1.42 3.40 0.00 5.51 0.00 6.16 10.50 15.20 0.00 0.00 0.00 2.47 0.00 0.00 0.00 5.76 23.25 9.33 3.03 3.12 3.50 22 E2a_E3b KnownJunction 0 10.15 43.15 8.90 13.25 10.95 24.76 6.01 33.52 5.73 22.70 2.68 0.00 0.00 2.47 0.00 11.62 0.00 22.92 27.67 31.26 0.00 2.69 0.00 23 E2a_E3c NovelJunction 0 0.00 2.83 0.00 0.00 0.00 5.79 0.00 13.88 20.46 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 3.58 0.00 0.00 0.00 0.00 24 ER2c ExonRegion 0 22.77 71.16 0.14 0.30 4.58 17.96 5.44 9.27 6.23 7.22 0.66 0.00 0.00 3.28 0.00 3.05 0.09 10.27 7.55 8.28 1.77 1.85 0.00 25 E2_Db NovelBoundary 0 54.97 175.03 7.69 20.34 10.44 20.90 18.37 50.27 13.98 24.79 0.00 6.15 6.82 2.24 15.20 4.10 0.00 22.01 35.58 51.90 3.15 8.27 7.60 26 Ix Intron 0 32.48 68.84 1.65 5.50 19.32 19.04 7.77 4.65 11.63 8.49 0.87 3.22 0.00 3.06 0.92 2.68 0.00 10.79 28.81 24.97 1.99 3.76 5.30 27 Ix_SR1 SilentIntronRegion 0 33.04 70.06 1.68 5.60 19.67 19.36 7.91 4.73 11.84 8.64 0.89 3.28 0.00 3.12 0.94 2.73 0.00 10.99 29.33 25.40 2.03 3.83 5.40 28 E3_Aa NovelBoundary 0 78.61 99.00 7.60 18.95 39.30 36.68 38.91 57.63 41.58 25.06 2.68 20.26 6.17 9.48 4.45 3.59 0.00 27.57 46.50 93.06 2.78 13.90 8.28 29 ER3a ExonRegion 0 44.86 75.67 4.08 10.06 16.12 24.97 18.48 8.12 15.02 22.12 2.62 2.96 2.59 1.73 3.02 9.78 2.74 20.69 50.84 38.44 3.33 6.11 1.66 30 E3_Ab KnownBoundary 0 94.09 140.11 8.22 18.38 21.99 40.37 9.89 23.58 33.30 55.26 9.79 12.30 0.00 2.47 0.00 17.43 3.83 37.31 66.26 76.76 9.02 3.12 8.11 31 ER3b ExonRegion 0 60.28 171.00 9.87 25.53 43.39 39.75 21.04 48.21 40.34 50.87 4.28 2.47 0.00 6.32 2.59 11.52 2.77 56.39 104.38 88.11 12.55 10.01 7.08 32 E3_Da KnownBoundary 0 26.30 147.47 5.03 3.46 8.66 51.79 8.08 18.81 34.11 22.19 0.00 0.00 0.00 5.12 0.00 0.00 0.00 41.33 21.93 65.71 4.94 5.39 12.98 33 E3a_E3c KnownJunction 0 22.67 11.77 3.46 20.21 12.05 7.95 15.72 34.34 5.03 10.74 0.00 0.00 0.00 4.94 0.00 0.00 0.00 17.62 13.46 23.91 0.00 0.00 0.00 34 ER3c ExonRegion 0 41.34 84.58 6.02 8.73 21.63 35.61 16.72 20.91 29.56 23.41 3.61 7.13 8.22 7.93 4.19 10.60 8.48 33.41 61.37 54.31 10.60 5.18 15.34 35 E3_Ac KnownBoundary 0 35.56 97.94 5.44 7.19 21.48 37.42 9.72 22.02 34.52 30.03 2.53 0.00 6.82 3.00 0.00 7.86 4.11 24.42 68.99 41.87 6.05 5.57 19.55 36 ER3d ExonRegion 0 58.06 83.26 5.57 22.17 18.68 34.33 20.70 31.73 22.03 24.28 3.48 7.12 2.75 5.17 3.01 3.32 5.87 32.16 65.73 44.23 4.13 6.67 7.99 37 E3_Db NovelBoundary 0 615.81 556.02 826.35 1046.49 644.14 313.97 1097.75 988.12 1073.92 851.79 267.28 427.49 495.26 218.97 133.14 520.63 537.73 1033.60 455.26 841.85 287.70 227.36 514.91 38 E3b_E4a KnownJunction 0 10.59 3.22 1.71 1.30 0.00 7.15 1.99 3.90 4.83 5.35 7.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 5.05 0.00 2.51 0.00 39 E3b_E5a KnownJunction 0 3.78 14.60 3.05 8.76 3.23 9.88 11.70 23.70 10.30 4.38 0.00 0.00 0.00 2.41 0.00 0.00 0.00 9.74 31.25 6.39 0.00 0.00 0.00 40 Ix Intron 0 8.08 18.13 2.34 3.03 4.73 12.09 7.07 8.67 14.37 16.59 0.94 2.09 1.07 3.30 0.94 2.27 4.01 39.88 44.98 49.09 4.97 1.23 2.85 41 Ix_SR1 SilentIntronRegion 0 8.08 18.14 2.35 3.03 4.74 12.09 7.08 8.67 14.38 16.60 0.94 2.09 1.07 3.31 0.94 2.27 4.01 39.91 45.01 49.12 4.97 1.23 2.85 42 E4_Aa NovelBoundary 0 3.78 30.19 3.81 0.00 0.00 8.01 5.83 12.45 11.34 25.79 0.00 0.00 0.00 0.00 0.00 4.36 3.93 36.23 45.46 37.07 3.15 0.00 0.00 43 ER4a ExonRegion 0 6.98 18.58 0.75 5.06 5.12 7.43 8.19 5.12 3.67 4.21 2.44 2.11 2.46 2.44 1.31 0.00 2.10 2.45 24.61 13.38 2.81 2.40 3.74 44 E4_Da NovelBoundary 0 75.35 79.33 11.21 11.69 6.71 29.07 24.33 27.23 37.73 37.85 2.63 0.00 6.82 9.71 4.45 4.10 11.87 65.91 128.66 63.15 8.83 7.96 0.00 45 Ix Intron 0 11.02 37.87 5.47 7.38 8.82 12.98 8.88 20.64 20.54 28.23 2.03 0.40 1.36 4.69 1.34 3.45 7.66 58.56 54.52 62.67 6.68 2.18 5.94 46 Ix_SR1 SilentIntronRegion 0 11.03 37.92 5.48 7.39 8.84 13.00 8.90 20.68 20.57 28.27 2.03 0.40 1.37 4.69 1.34 3.46 7.67 58.64 54.59 62.76 6.69 2.19 5.95 47 E5_Aa NovelBoundary 0 10.89 61.96 2.54 8.56 16.81 51.28 10.16 16.63 21.87 33.95 2.11 0.00 0.00 2.35 0.00 6.84 8.60 39.96 31.81 48.51 11.80 0.00 11.44 48 ER5a ExonRegion 0 33.17 76.01 10.54 14.40 20.39 27.43 20.91 48.05 39.04 45.35 3.21 2.76 0.96 4.83 2.77 4.04 9.55 75.15 94.67 89.49 7.49 3.63 5.37