Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC108488.3 Gene 0 16.60 9.89 45.13 20.13 18.46 13.40 9.55 16.40 16.40 12.33 15.16 7.45 5.77 18.44 13.39 22.56 12.22 13.68 8.69 34.90 8.85 7.45 9.67 2 438485 Transcript 0 2.43 0.52 0.00 0.00 1.52 1.04 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 3 422961 Transcript 0 2.47 1.86 23.72 6.59 9.74 1.00 1.57 4.97 2.62 1.71 1.91 0.71 1.62 2.53 4.59 5.80 0.68 1.34 1.41 9.09 1.05 4.16 5.67 4 438482 Transcript 0 11.33 8.11 26.31 16.54 8.97 7.68 9.50 11.88 13.08 8.50 12.32 7.41 5.67 18.30 8.51 19.33 8.97 15.64 8.45 27.34 9.58 4.03 8.00 5 416463 Transcript 0 0.00 0.00 5.88 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 439547 Transcript 0 0.00 0.00 3.84 3.10 0.00 0.00 0.00 11.87 11.40 0.00 0.00 0.00 0.00 2.47 0.00 3.93 0.00 0.00 0.00 3.26 2.97 0.00 0.00 7 423704 Transcript 1 7.47 3.59 23.03 15.63 16.13 15.91 13.78 21.10 8.28 9.18 15.75 2.93 2.07 27.66 6.83 23.86 12.91 6.09 6.00 28.35 0.19 4.41 8.90 8 ER1a ExonRegion 0 1.41 0.00 0.00 0.00 0.79 0.54 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER2a ExonRegion 0 5.88 1.55 0.00 0.00 3.75 2.57 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 10 E2_Da NovelBoundary 0 86.24 108.34 139.29 122.73 178.61 208.06 212.16 84.94 79.66 125.58 291.39 223.12 100.64 317.44 461.34 195.33 243.10 170.91 213.94 226.71 244.70 145.49 129.15 11 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E3_Aa NovelBoundary 0 10.59 8.95 3.37 4.53 7.47 7.33 1.94 0.00 4.57 4.86 7.48 5.85 0.00 2.53 0.00 7.78 0.00 12.52 0.00 3.26 0.00 2.63 4.27 13 E3_Ab NovelBoundary 0 0.00 21.18 13.39 5.46 8.06 13.29 6.14 9.41 1.13 0.00 2.11 12.00 0.00 8.83 5.81 16.66 8.88 10.78 0.00 20.45 0.00 0.00 0.00 14 ER3a ExonRegion 0 0.85 0.00 0.98 0.82 1.61 0.00 0.00 1.04 0.25 0.46 2.32 0.00 0.00 1.62 2.90 2.38 0.00 2.22 0.00 0.43 0.44 0.00 2.94 15 ER3b ExonRegion 0 40.08 17.70 48.74 18.80 31.56 34.12 25.26 16.04 17.56 19.40 22.65 7.70 12.42 25.84 19.83 50.51 18.76 15.33 20.63 40.67 10.73 12.77 11.91 16 E3_Da NovelBoundary 0 0.00 0.00 0.00 1.60 3.90 0.00 4.42 4.56 1.16 2.77 2.11 6.30 6.49 3.00 9.64 8.72 0.00 11.69 0.00 25.82 0.00 3.00 0.00 17 E3a_E4a KnownJunction 0 16.82 11.25 57.80 12.32 3.82 17.32 1.68 13.60 11.00 10.50 18.74 6.30 0.00 2.71 15.20 7.95 7.85 7.63 8.66 14.19 11.31 3.12 9.90 18 I3 Intron 0 1.80 1.08 5.63 1.51 3.41 2.34 2.67 4.93 4.69 3.45 7.39 3.36 4.90 10.41 5.84 9.16 6.66 2.83 7.45 13.34 0.70 2.44 3.43 19 I3_SR1 SilentIntronRegion 0 1.80 1.08 5.64 1.51 3.42 2.34 2.68 4.94 4.70 3.46 7.41 3.36 4.91 10.44 5.85 9.18 6.68 2.84 7.46 13.37 0.70 2.44 3.44 20 ER4a ExonRegion 0 18.47 11.55 81.16 17.68 33.79 20.45 8.27 21.02 16.24 16.50 29.92 14.25 14.07 37.44 23.16 53.37 21.18 17.25 15.28 62.13 14.72 14.81 17.44 21 E4_Ab NovelBoundary 0 26.82 8.35 74.66 36.73 19.44 19.59 18.33 30.81 16.35 15.50 28.53 19.66 6.01 40.38 34.37 35.03 22.25 11.65 8.28 48.64 24.15 5.76 22.54 22 E4_Da NovelBoundary 0 19.71 9.80 10.38 13.72 3.74 12.32 15.72 4.68 4.95 7.17 12.42 12.60 0.00 9.83 0.00 20.51 3.55 9.00 7.72 24.29 5.99 3.00 0.00 23 E4a_E5a KnownJunction 0 3.04 0.00 5.29 1.23 0.00 0.00 5.83 9.08 3.56 1.32 2.58 6.30 6.17 5.47 0.00 8.29 4.02 1.91 0.00 3.26 10.93 0.00 0.00 24 E4a_E5d KnownJunction 0 0.00 0.00 5.88 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4a_E6a KnownJunction 0 3.41 3.35 62.53 15.15 23.60 2.44 4.06 8.63 3.12 1.13 2.68 0.00 0.00 4.59 9.39 13.76 0.00 1.66 4.24 23.14 2.72 12.49 11.61 26 ER4b ExonRegion 0 7.90 4.54 67.72 20.44 18.91 5.32 9.49 19.13 7.12 6.42 14.30 5.20 5.47 21.60 20.99 28.93 10.78 4.62 3.72 33.55 15.79 9.93 11.45 27 E5_Aa NovelBoundary 0 24.52 12.89 41.10 27.14 24.53 15.79 19.52 30.64 26.68 26.97 22.22 0.00 25.81 21.78 21.01 30.59 20.01 26.53 33.98 42.38 11.06 11.39 3.93 28 ER5a ExonRegion 0 16.77 13.75 38.04 25.37 10.02 8.62 12.35 13.08 15.78 9.31 19.62 10.02 4.90 29.09 12.17 25.46 7.78 23.74 14.98 40.65 7.63 4.94 12.01 29 E5_Ab KnownBoundary 0 50.90 19.67 67.92 55.67 26.83 14.65 17.84 25.55 20.69 15.74 25.16 25.21 13.15 46.74 29.30 37.08 11.50 36.02 9.13 56.76 14.64 12.49 23.90 30 ER5b ExonRegion 0 13.09 10.31 54.68 38.78 10.63 15.39 13.02 22.54 30.03 22.10 23.03 15.61 1.39 28.59 22.35 30.31 18.69 19.57 21.53 47.92 15.43 13.12 18.12 31 E5_Da KnownBoundary 0 3.63 5.20 31.49 23.47 11.46 19.70 18.24 19.67 23.09 21.95 28.64 0.00 0.00 19.07 29.79 12.56 3.93 8.71 13.18 48.96 11.92 3.12 20.32 32 E5a_E5d KnownJunction 0 0.00 0.00 3.84 3.10 0.00 0.00 0.00 11.87 11.40 0.00 0.00 0.00 0.00 2.47 0.00 3.93 0.00 0.00 0.00 3.26 2.97 0.00 0.00 33 E5a_E6a NovelJunction 0 0.00 0.00 4.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 0.00 4.77 14.09 0.00 4.21 4.10 0.00 6.26 0.00 0.00 0.00 34 ER5c ExonRegion 0 14.16 10.59 35.60 23.02 16.89 14.41 10.33 13.49 19.89 14.88 14.75 5.90 5.93 20.34 13.37 24.23 15.09 21.26 10.36 38.10 10.17 7.15 12.00 35 E5_Ac KnownBoundary 0 21.26 2.63 41.04 22.94 8.15 14.25 10.64 12.86 12.24 8.81 10.42 0.00 5.84 18.72 4.45 3.93 13.18 16.58 4.42 26.27 3.09 2.27 4.01 36 ER5d ExonRegion 0 14.55 10.15 29.01 16.71 18.36 19.41 10.42 15.13 15.30 8.92 17.18 4.86 2.35 19.39 7.31 19.85 13.09 16.93 2.44 36.81 3.35 4.78 4.02 37 E5_Db KnownBoundary 0 11.34 2.70 18.89 11.49 25.38 22.09 13.65 19.06 7.67 6.31 18.53 6.30 0.00 19.60 8.90 15.89 13.56 6.30 4.80 35.09 0.00 5.82 8.54 38 ER5e ExonRegion 1 7.47 3.59 23.03 15.63 16.13 15.91 13.78 21.10 8.28 9.18 15.75 2.93 2.07 27.66 6.83 23.86 12.91 6.09 6.00 28.35 0.19 4.41 8.90 39 E5_Ad KnownBoundary 0 3.33 5.66 19.43 14.62 25.21 5.45 18.20 12.12 7.75 7.68 15.42 5.40 6.82 26.19 0.00 19.14 3.93 4.27 4.05 25.76 0.00 2.57 3.33 40 ER5f ExonRegion 0 5.24 4.66 30.66 13.16 20.00 8.63 7.69 14.86 13.13 9.44 10.37 6.81 6.41 19.63 6.23 6.31 2.90 9.94 2.29 24.16 9.86 4.75 15.58 41 E5_Dc NovelBoundary 0 6.45 21.90 10.38 6.83 16.81 2.21 0.00 10.15 7.12 4.41 7.69 0.00 0.00 9.06 0.00 11.54 0.00 16.04 0.00 20.13 2.90 2.57 0.00 42 E5c_E6a KnownJunction 0 7.41 0.00 16.06 11.72 13.58 7.78 5.26 11.83 11.89 9.75 5.00 6.30 0.00 2.41 0.00 0.00 0.00 7.05 0.00 14.51 0.00 5.20 3.84 43 I5 Intron 0 9.83 8.40 18.85 15.31 13.54 7.00 5.19 9.04 11.21 5.65 9.38 3.47 3.62 12.22 9.94 11.35 7.84 2.38 7.23 22.84 3.64 4.30 2.73 44 I5_SR1 SilentIntronRegion 0 9.73 8.47 19.41 15.17 13.45 6.59 6.85 9.62 10.84 5.65 9.44 3.29 4.56 14.62 7.53 12.81 9.01 1.98 8.24 22.31 4.43 3.29 2.53 45 I5_AR1 ActiveIntronRegion 0 10.24 8.33 17.67 15.87 13.93 8.19 0.99 7.67 12.33 5.73 9.34 3.98 1.23 6.19 16.31 7.74 4.92 3.43 4.74 24.54 1.64 6.98 3.30 46 E6_Aa NovelBoundary 0 27.71 22.96 45.98 19.11 19.44 7.72 6.05 15.44 12.90 5.80 18.22 0.00 6.82 17.48 22.75 3.76 20.20 11.98 4.42 27.61 2.41 14.08 15.96 47 ER6a ExonRegion 0 25.46 13.36 86.09 32.31 24.97 10.66 7.77 28.79 23.96 15.21 17.23 11.56 5.04 14.91 20.62 18.28 13.94 12.96 7.76 45.84 13.41 10.44 8.97 48 E6_Da KnownBoundary 0 0.00 0.00 5.53 3.23 3.31 0.00 0.00 0.00 1.45 1.05 2.58 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 4.73 0.00 0.00 0.00 49 E6_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E6_Dc KnownBoundary 0 0.00 0.00 9.82 0.00 0.00 0.00 2.21 6.24 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 3.41 51 ER6b ExonRegion 0 4.23 6.10 11.03 2.73 5.35 1.83 3.97 5.19 6.18 5.73 3.87 0.00 0.00 3.25 0.00 2.97 3.30 3.70 0.00 6.38 0.00 0.00 2.94 52 ER6c ExonRegion 0 1.27 7.32 11.03 3.00 2.68 0.73 1.32 5.19 6.18 5.73 1.93 0.00 0.00 3.25 0.00 2.97 3.30 2.96 0.00 7.23 0.00 0.00 2.94 53 ER6d ExonRegion 0 3.16 2.22 7.64 3.81 4.02 0.55 0.64 5.24 4.50 3.53 0.71 2.13 4.85 1.39 1.48 1.25 2.05 0.14 0.00 3.70 0.00 0.00 2.47