Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM49A Gene 0 56.73 12.18 12.75 24.27 42.50 22.87 23.03 29.28 32.24 23.15 73.30 21.54 27.23 4.52 25.59 0.42 0.37 30.64 39.81 21.44 15.25 25.18 7.31 2 451689 Transcript 0 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.19 0.00 0.00 3 445605 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 381323 Transcript 0 47.15 4.86 9.16 14.15 27.54 7.58 9.47 12.44 11.80 6.78 13.03 5.17 2.21 0.83 7.58 0.00 0.00 4.17 8.65 5.50 1.39 7.72 0.15 5 406434 Transcript 0 1.26 0.00 0.84 1.38 0.00 0.78 0.79 0.90 1.05 0.72 5.06 0.61 0.33 0.89 0.35 0.00 0.00 0.00 1.13 0.00 0.38 1.65 0.00 6 355549 Transcript 0 40.21 2.54 2.14 2.39 6.02 3.21 4.96 3.89 5.87 3.73 27.54 1.08 5.86 1.22 18.13 0.74 0.00 23.10 18.32 7.45 5.51 7.29 2.94 7 469507 Transcript 0 6.42 0.31 1.68 1.43 6.73 1.36 1.69 4.35 4.80 2.60 15.47 0.55 9.84 1.61 3.55 0.00 0.00 2.87 0.98 1.30 5.80 2.91 0.90 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 0.00 9 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 0 5.74 0.00 2.10 0.00 0.00 0.00 0.00 0.00 0.88 0.00 7.73 0.00 0.00 0.00 1.24 0.00 0.00 3.70 0.00 3.34 1.26 0.00 0.00 13 ER3b ExonRegion 1 103.89 5.68 6.05 4.15 12.21 8.37 11.23 6.70 12.25 8.51 71.52 3.16 12.12 2.47 48.96 2.23 0.00 53.51 31.72 22.61 16.44 19.10 7.28 14 E3a_E4a NovelJunction 0 7.48 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 10.06 6.30 0.00 0.00 15.20 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 15 E3a_E5b KnownJunction 1 256.19 18.48 11.12 13.25 37.35 12.89 27.16 18.98 29.48 21.41 149.20 5.40 26.46 4.41 93.33 3.93 0.00 130.33 82.73 48.64 23.78 43.48 20.15 16 I3_AR3 ActiveIntronRegion 0 20.98 0.84 6.60 2.73 7.18 0.38 2.73 1.06 0.95 0.53 0.60 0.74 0.80 0.14 1.48 0.00 0.00 2.75 1.32 0.22 0.00 0.22 0.00 17 I3_SR4 SilentIntronRegion 0 12.56 0.47 1.48 2.12 0.62 0.00 1.72 1.79 1.92 0.00 0.45 0.00 0.00 0.00 0.24 0.00 0.00 0.96 2.58 0.84 0.00 0.00 0.00 18 ER4a ExonRegion 0 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 19 E4a_E5b KnownJunction 0 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 20 ER5a ExonRegion 0 40.21 2.54 2.14 2.39 6.02 3.21 4.96 3.89 5.87 3.73 27.54 1.08 5.86 1.22 18.13 0.74 0.00 23.10 18.32 7.45 5.51 7.29 2.94 21 ER5b ExonRegion 1 39.98 2.89 6.69 7.03 6.89 2.76 5.58 18.67 23.94 16.89 105.34 4.11 14.52 1.75 28.60 0.27 0.00 49.15 30.60 18.45 21.97 17.93 6.25 22 E5a_E6a KnownJunction 0 0.00 0.00 1.77 0.00 0.00 0.00 0.00 2.26 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E5a_E7a KnownJunction 1 20.67 13.81 10.70 19.34 15.62 0.00 0.00 23.04 52.66 27.05 143.19 36.61 6.82 16.42 78.37 0.00 0.00 81.25 69.46 32.09 15.69 47.82 10.93 24 ER6a ExonRegion 0 3.78 0.00 0.76 2.27 0.00 2.35 2.38 0.45 1.56 0.59 3.88 1.83 0.99 0.21 1.05 0.00 0.00 0.00 3.39 0.00 1.13 1.82 0.00 25 E6a_E7a KnownJunction 0 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 1.59 1.56 7.11 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 26 ER7a ExonRegion 0 26.80 6.84 14.06 13.20 23.65 17.17 6.88 28.48 47.30 22.03 147.50 20.89 29.66 10.46 56.28 1.89 0.00 90.49 72.91 32.18 24.30 39.51 22.76 27 E7a_E8a KnownJunction 0 30.15 3.09 19.22 7.19 31.75 54.46 18.81 30.27 41.29 19.18 120.56 17.71 35.87 7.77 50.31 0.00 0.00 70.18 21.18 37.46 28.66 24.68 14.68 28 ER8a ExonRegion 1 31.07 5.68 14.71 12.37 34.06 27.61 26.47 35.16 44.94 34.90 157.31 27.79 76.16 10.32 31.99 1.24 1.16 66.69 48.20 32.09 32.66 37.91 14.44 29 E8a_E9a KnownJunction 1 63.94 16.58 20.49 13.82 26.40 11.24 24.73 42.47 47.40 35.94 254.17 23.41 123.37 12.18 22.87 0.00 3.65 62.84 84.90 43.46 39.72 28.84 15.62 30 ER9a ExonRegion 1 53.90 20.34 16.84 13.00 26.23 17.07 24.09 34.91 46.83 26.54 220.46 7.32 83.10 12.03 47.07 0.00 0.37 63.55 43.52 35.15 34.24 43.31 17.33 31 E9_Da KnownBoundary 1 53.19 21.84 13.48 12.72 14.77 9.94 17.18 26.25 46.85 29.95 156.72 13.65 33.93 0.00 30.78 0.00 0.00 66.53 14.40 30.42 22.98 16.96 8.28 32 E9_Db NovelBoundary 1 6.67 2.89 1.36 4.36 11.21 10.51 5.34 3.78 6.37 8.19 58.33 0.00 6.82 4.65 4.45 0.00 0.00 13.89 12.61 7.99 12.36 8.14 0.00 33 ER9b ExonRegion 1 43.78 15.63 15.74 14.56 25.91 13.03 21.74 37.21 52.78 48.53 195.53 11.39 53.32 6.92 31.91 0.00 0.17 82.47 39.06 31.13 36.54 31.69 7.57 34 E9c_E10a KnownJunction 1 68.01 8.49 16.76 18.98 63.50 16.81 30.12 42.22 55.29 76.72 260.01 19.96 56.98 19.31 29.67 0.00 4.49 89.50 86.97 26.53 43.18 76.79 18.27 35 ER9c ExonRegion 1 55.56 7.12 13.25 15.84 43.31 15.24 21.76 39.00 51.41 62.22 241.37 17.05 56.87 14.01 26.84 0.00 3.30 89.15 71.27 29.52 39.67 61.59 12.11 36 ER10a ExonRegion 0 74.22 9.17 22.23 24.78 42.71 48.60 20.87 51.59 46.74 45.68 223.09 39.82 100.65 13.10 52.12 1.11 1.52 85.93 69.64 42.07 41.56 51.71 19.59 37 E10a_E11a KnownJunction 1 76.09 9.47 24.42 33.20 34.89 65.93 25.22 48.14 68.00 54.72 229.64 18.91 81.65 9.65 73.80 0.00 4.77 68.61 44.90 30.36 50.41 30.86 18.69 38 ER11a ExonRegion 1 52.63 6.69 20.45 24.58 33.24 39.89 23.70 49.29 53.28 42.55 190.43 19.32 49.97 12.74 45.69 0.00 1.40 57.81 60.28 34.37 44.75 33.50 13.72 39 E11a_E12a KnownJunction 0 47.34 8.81 21.29 12.72 24.36 48.95 46.42 32.57 31.60 23.07 129.93 34.66 96.58 23.84 52.54 0.00 0.00 48.75 16.66 23.59 26.56 16.23 11.52 40 ER11b ExonRegion 1 34.76 9.54 20.12 12.69 17.91 39.14 34.32 41.62 33.35 28.63 131.36 21.15 75.58 14.62 45.64 0.00 0.00 47.97 47.54 24.30 34.16 21.80 12.20 41 ER12a ExonRegion 1 72.43 17.73 20.19 22.56 58.68 22.21 27.33 39.39 43.28 36.90 178.29 32.71 89.19 13.52 69.95 0.00 3.81 74.65 49.60 32.08 40.29 45.53 18.40 42 E12a_E13a KnownJunction 0 74.61 15.72 39.38 29.07 42.95 34.92 16.43 41.36 42.33 33.31 163.15 43.81 80.35 9.89 127.45 0.00 4.58 52.98 76.52 54.39 40.53 32.51 20.23 43 ER13a ExonRegion 0 86.01 10.07 19.68 20.68 42.58 40.73 19.78 40.66 43.43 29.30 178.31 26.73 61.91 12.06 67.93 0.00 1.28 47.88 51.84 27.45 41.43 28.13 14.79 44 E13_Da KnownBoundary 0 9.71 0.00 0.00 2.06 12.99 2.16 2.08 3.94 3.10 4.14 15.42 0.00 12.99 0.00 5.56 0.00 0.00 1.91 0.00 0.00 8.22 2.27 0.00 45 E13a_E14a KnownJunction 0 162.84 9.60 10.67 20.21 23.17 45.37 23.63 37.30 42.71 27.64 150.83 20.26 47.07 12.36 33.50 0.00 4.11 62.84 63.63 10.93 32.12 36.86 25.52 46 ER13b ExonRegion 0 6.42 0.31 1.68 1.43 6.73 1.36 1.69 4.35 4.80 2.60 15.47 0.55 9.84 1.61 3.55 0.00 0.00 2.87 0.98 1.30 5.80 2.91 0.90 47 E14_Aa NovelBoundary 0 26.30 3.16 6.56 1.66 8.40 0.00 2.25 8.30 8.13 0.00 30.59 6.30 0.00 0.00 0.00 0.00 0.00 1.91 4.80 0.00 3.15 2.63 0.00 48 ER14a ExonRegion 0 92.14 12.09 16.58 20.41 31.41 30.47 27.30 36.52 44.69 27.18 144.94 29.15 40.55 10.77 54.78 1.90 2.31 71.74 66.77 29.39 33.73 32.17 18.78 49 E14a_E15a KnownJunction 0 83.35 24.21 14.61 34.19 38.79 23.17 42.79 38.24 51.65 29.36 156.72 36.91 63.96 15.30 83.19 4.36 0.00 44.81 60.14 42.44 46.70 34.54 4.35 50 E15_Aa NovelBoundary 0 7.56 0.00 4.91 0.00 4.33 2.78 0.00 2.55 1.07 0.00 4.84 13.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER15a ExonRegion 0 46.56 9.62 14.12 21.60 48.01 18.49 25.94 41.19 37.84 29.48 145.95 26.28 52.25 6.13 57.58 0.88 0.00 39.79 54.29 20.20 39.95 29.29 4.05 52 E15a_E16a KnownJunction 0 83.13 18.15 14.13 20.18 76.40 5.79 25.44 32.28 29.54 25.36 138.09 24.31 45.13 7.42 54.89 0.00 0.00 50.57 86.12 23.33 23.41 29.45 11.87 53 ER16a ExonRegion 0 42.76 12.42 17.33 21.15 67.27 28.85 27.76 34.16 40.45 31.81 107.55 33.42 32.68 8.35 58.93 3.34 0.00 57.66 79.78 35.34 25.93 30.70 23.77 54 E16_Da KnownBoundary 0 41.41 17.89 25.61 26.74 80.90 40.32 34.45 48.39 53.85 46.42 124.03 61.52 27.92 6.36 42.52 12.56 0.00 80.54 78.97 46.21 22.98 24.06 28.77 55 ER16b ExonRegion 0 63.03 17.20 13.93 32.90 54.06 29.87 31.15 35.49 39.38 28.50 68.81 29.44 26.79 4.11 24.99 0.41 0.24 30.59 49.94 27.05 14.40 30.11 7.73 56 E16_Db KnownBoundary 0 107.20 5.26 9.14 46.18 37.86 26.35 18.68 27.03 37.73 16.22 32.06 25.06 20.45 4.59 22.25 0.00 0.00 5.14 14.31 25.63 2.53 16.47 4.27 57 ER16c ExonRegion 0 88.56 9.71 16.23 28.29 55.08 15.16 18.93 24.88 22.71 13.56 18.34 10.33 4.42 1.66 13.92 0.00 0.00 4.65 17.30 7.65 1.52 15.44 0.30