Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TTC32 Gene 0 73.49 53.06 34.75 68.12 124.78 59.95 44.95 47.89 25.85 30.72 28.60 44.11 25.90 28.13 28.42 27.42 20.27 15.19 9.17 25.41 5.72 10.91 7.54 2 333610 Transcript 0 4.43 1.97 0.00 1.85 7.23 9.05 2.31 3.13 3.58 2.96 9.07 0.00 0.00 6.95 8.17 17.10 0.96 9.60 0.92 2.89 0.00 1.62 1.88 3 402414 Transcript 0 5.07 5.59 2.39 5.20 13.27 3.99 6.12 3.91 0.65 2.92 0.00 4.19 10.81 1.20 1.29 0.69 0.00 0.00 0.00 1.19 0.00 2.59 1.23 4 431392 Transcript 0 6.19 7.64 8.80 11.01 29.99 15.99 12.33 7.19 7.36 9.01 16.31 11.48 4.41 16.83 4.62 21.05 14.06 11.71 5.00 15.13 6.51 7.27 5.02 5 495698 Transcript 0 126.91 76.00 55.16 114.47 160.38 97.32 66.60 57.36 36.16 35.00 30.92 67.83 33.77 36.55 30.04 29.42 19.19 14.24 13.28 36.25 3.91 9.48 6.70 6 IG28_AR1 ActiveIntergenicRegion 0 0.65 2.11 6.24 2.85 1.80 2.58 3.72 1.57 1.24 2.09 2.01 17.14 0.24 2.25 2.71 0.91 1.01 1.01 0.00 2.21 0.94 1.91 0.00 7 ER1a ExonRegion 0 2.18 3.94 0.00 2.11 6.82 15.20 4.61 1.62 1.63 0.70 10.35 0.00 0.00 4.14 1.87 1.05 1.92 0.00 1.85 3.09 0.00 0.67 0.00 8 ER1b ExonRegion 0 11.02 6.65 3.41 9.08 12.23 28.58 15.18 9.11 8.50 11.70 27.66 1.51 0.79 16.01 24.27 21.39 11.83 14.72 8.19 16.02 7.18 2.45 1.86 9 E1_Da NovelBoundary 0 0.00 5.33 1.27 7.19 0.00 0.00 1.81 2.55 1.16 0.00 0.00 0.00 0.00 4.83 0.00 7.86 0.00 17.49 0.00 9.59 0.00 0.00 0.00 10 E1a_E3b KnownJunction 1 6.67 0.00 0.00 1.60 7.64 2.90 0.00 4.64 5.53 5.21 7.79 0.00 0.00 9.77 14.46 33.15 0.00 19.19 0.00 2.68 0.00 2.57 3.76 11 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 95.87 31.31 16.47 22.41 179.37 252.07 91.73 37.09 27.31 19.93 45.96 0.00 6.66 28.90 28.80 131.85 48.71 75.15 27.29 33.49 20.02 8.27 53.01 13 ER2a ExonRegion 0 12.37 15.28 13.10 20.62 34.01 31.97 20.81 14.39 14.72 13.03 27.56 16.80 8.81 29.07 9.24 29.88 28.12 23.42 5.67 23.81 9.87 8.66 10.04 14 E2_Da NovelBoundary 0 26.23 41.64 9.17 36.33 93.55 62.24 57.46 21.85 35.24 15.90 60.65 24.16 56.49 35.85 8.90 20.34 28.99 14.09 17.04 68.20 15.20 5.63 8.71 15 E2a_E3b KnownJunction 0 0.00 0.00 4.49 1.40 25.98 0.00 3.84 0.00 0.00 5.00 5.05 6.15 0.00 4.59 0.00 12.22 0.00 0.00 4.33 6.46 3.15 5.88 0.00 16 I2 Intron 0 32.16 35.61 24.43 55.40 87.12 66.50 48.08 30.76 27.13 29.23 30.61 63.17 48.60 37.03 14.41 26.48 20.90 24.84 10.42 26.28 7.37 11.30 9.19 17 I2_SR1 SilentIntronRegion 0 20.42 26.69 16.58 55.76 68.14 63.47 40.01 27.59 27.42 26.79 40.04 75.20 68.82 42.92 13.18 35.84 26.22 27.52 12.20 35.17 8.75 13.15 9.37 18 I2_AR1 ActiveIntronRegion 0 21.59 36.12 19.48 45.96 91.14 53.20 49.71 23.35 22.78 24.61 11.96 60.36 50.25 24.71 7.45 12.74 6.13 7.18 3.67 13.12 2.49 13.76 5.09 19 I2_SR2 SilentIntronRegion 0 33.00 39.29 32.43 60.63 102.11 80.46 57.63 47.51 36.00 41.64 38.20 82.56 46.31 44.14 18.53 26.36 20.73 26.68 9.71 24.77 11.95 7.47 12.21 20 I2_AR2 ActiveIntronRegion 1 56.00 44.41 34.99 61.55 99.85 76.36 52.14 33.94 26.83 30.89 33.15 42.44 23.68 38.18 20.54 28.06 28.32 37.30 14.92 28.51 8.14 8.55 11.42 21 E3_Aa NovelBoundary 0 181.14 88.27 36.72 108.94 178.27 74.79 74.68 69.21 28.21 45.40 55.44 43.66 13.47 43.73 55.50 25.72 14.31 24.42 12.52 21.03 7.85 7.90 13.06 22 ER3a ExonRegion 0 126.91 76.00 55.16 114.47 160.38 97.32 66.60 57.36 36.16 35.00 30.92 67.83 33.77 36.55 30.04 29.42 19.19 14.24 13.28 36.25 3.91 9.48 6.70 23 E3_Ab KnownBoundary 0 211.82 141.16 48.76 127.36 204.84 148.15 77.55 54.26 29.98 33.93 39.38 103.08 31.98 39.38 36.59 23.67 36.19 29.06 8.28 40.20 3.15 13.59 3.67 24 ER3b ExonRegion 0 189.45 114.49 66.80 130.35 358.00 155.61 119.00 100.64 44.50 64.94 58.08 82.70 49.87 51.59 64.33 59.23 34.38 25.72 15.27 37.94 7.73 15.55 14.86 25 E3_Da NovelBoundary 0 47.64 62.75 26.23 56.20 94.14 50.14 51.58 28.26 7.44 22.43 22.22 6.30 20.29 12.89 22.87 12.82 9.07 10.11 4.42 11.51 9.08 3.12 3.84 26 E3a_E4a KnownJunction 1 145.88 33.74 54.55 89.07 388.46 117.55 78.08 98.50 41.49 55.36 40.27 73.22 32.47 21.78 60.82 40.50 30.95 12.89 11.95 15.53 5.25 4.90 7.68 27 I3 Intron 0 47.91 108.04 40.43 76.85 123.78 74.20 55.16 29.16 18.10 28.17 13.81 23.69 23.85 19.16 15.26 14.09 6.77 11.25 12.17 23.18 1.56 9.87 6.65 28 I3_AR1 ActiveIntronRegion 0 48.04 108.34 40.54 77.07 124.13 74.40 55.31 29.24 18.15 28.25 13.85 23.75 23.91 19.21 15.30 14.12 6.79 11.28 12.20 23.24 1.56 9.90 6.67 29 E4_Aa NovelBoundary 0 47.05 82.29 38.88 74.48 151.61 50.71 56.53 38.65 19.85 30.60 0.00 18.01 25.65 13.30 8.90 0.00 0.00 0.00 0.00 26.01 0.00 7.65 0.00 30 ER4a ExonRegion 0 175.92 123.30 89.66 160.06 323.63 103.27 81.55 139.44 63.91 84.46 53.22 108.92 45.51 45.86 79.14 38.67 38.07 10.85 12.96 41.02 3.99 30.92 8.98 31 E4_Da KnownBoundary 1 165.14 226.93 87.79 165.48 353.40 110.56 98.97 137.02 62.79 88.43 30.01 102.33 72.40 21.72 63.79 33.84 21.69 0.00 29.27 35.79 0.00 14.63 7.85 32 ER4b ExonRegion 1 106.21 102.14 55.09 112.32 211.20 42.59 50.35 98.62 37.20 53.58 14.58 77.84 57.24 15.71 45.40 14.15 7.27 1.73 10.63 18.45 0.41 19.32 6.41 33 E4_Db KnownBoundary 1 17.71 9.14 21.05 20.01 43.12 5.05 17.53 17.37 2.92 21.19 0.00 0.00 18.99 4.59 8.90 0.00 0.00 0.00 0.00 3.26 0.00 8.39 0.00 34 ER4c ExonRegion 1 10.14 11.18 4.78 10.41 26.54 7.99 12.24 7.83 1.29 5.85 0.00 8.38 21.62 2.39 2.58 1.38 0.00 0.00 0.00 2.38 0.00 5.17 2.46 35 IG27_AR1 ActiveIntergenicRegion 0 19.65 0.00 14.84 0.72 7.31 2.49 5.09 3.27 2.26 0.67 0.46 3.41 0.91 2.42 0.00 0.70 0.00 0.22 0.00 1.01 5.99 3.08 9.21 36 IG27_SR1 SilentIntergenicRegion 0 15.02 0.59 10.93 1.12 5.29 2.23 5.44 3.95 2.07 1.81 0.13 2.96 0.99 2.17 0.65 0.87 0.43 0.89 0.62 1.66 5.51 1.66 8.44