Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GEN1 Gene 0 57.27 60.49 44.72 54.86 122.47 61.11 197.97 74.93 35.30 100.33 175.97 241.01 201.53 204.81 133.33 223.44 182.71 58.72 22.43 87.91 8.15 16.46 11.54 2 317402 Transcript 0 1.90 0.81 0.03 0.00 1.18 0.76 3.18 0.93 1.34 0.00 9.31 7.94 0.16 12.66 3.68 8.35 11.28 10.44 1.37 3.01 0.97 0.00 3.99 3 381254 Transcript 0 7.66 10.68 7.42 9.25 12.84 8.34 20.86 11.11 3.61 17.39 43.60 12.11 9.31 68.00 32.00 67.43 62.23 26.72 8.79 31.64 2.78 1.82 2.82 4 ER1a ExonRegion 0 3.80 1.61 0.06 0.00 2.35 1.52 4.20 0.06 1.17 0.00 11.30 3.28 0.32 18.26 7.35 12.86 14.80 6.91 2.75 2.75 1.94 0.00 4.66 5 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.16 1.81 1.50 0.00 7.32 12.60 0.00 7.06 0.00 3.85 7.76 13.97 0.00 3.26 0.00 0.00 3.33 6 Ix Intron 0 0.00 0.00 0.00 0.00 1.76 0.00 1.31 0.00 1.21 0.56 7.63 2.35 5.08 38.63 9.94 30.32 20.64 0.91 1.05 2.10 7.98 0.00 0.00 7 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 1.78 0.00 1.32 0.00 1.23 0.57 7.73 2.38 5.15 39.14 10.07 30.71 20.91 0.92 1.06 2.13 8.08 0.00 0.00 8 E2_Aa NovelBoundary 0 0.00 2.63 1.15 0.00 4.33 0.00 9.58 2.46 1.36 2.36 4.79 6.00 8.28 34.79 26.21 103.14 52.92 18.45 3.76 15.60 5.99 2.69 0.00 9 ER2a ExonRegion 1 3.80 2.44 2.35 2.36 6.19 7.80 14.64 3.48 3.63 9.04 46.21 15.23 10.11 95.50 22.22 104.32 93.79 25.00 9.06 35.95 3.44 1.07 3.76 10 E2_Da NovelBoundary 0 24.45 0.00 11.24 7.56 0.00 0.00 4.11 6.45 7.49 15.98 32.75 24.31 14.77 100.36 37.09 135.43 133.24 66.04 23.44 59.12 8.65 0.00 0.00 11 E2a_E3a KnownJunction 1 0.00 3.09 0.00 2.06 0.00 2.90 0.00 4.03 1.53 13.91 44.59 0.00 0.00 50.80 8.90 29.31 40.02 24.50 8.28 27.36 0.00 0.00 0.00 12 Ix Intron 0 8.22 11.09 5.92 9.16 18.63 6.91 61.63 9.58 8.36 15.18 46.64 136.13 145.60 95.53 37.33 96.34 79.00 21.04 7.03 41.42 2.43 4.62 5.22 13 Ix_AR1 ActiveIntronRegion 0 4.42 8.61 4.33 4.24 12.01 3.88 40.97 7.17 6.69 10.80 37.58 130.40 173.26 95.96 29.67 89.85 72.96 25.06 7.56 35.77 2.93 3.62 5.01 14 Ix_SR1 SilentIntronRegion 0 0.17 8.28 2.62 4.35 12.44 5.02 30.48 5.32 4.79 6.94 30.53 32.26 42.32 61.33 21.39 73.22 52.84 10.91 5.97 29.08 3.22 2.53 1.26 15 Ix_AR2 ActiveIntronRegion 0 5.08 5.49 7.05 11.66 15.07 7.55 56.36 4.77 4.21 17.04 35.44 100.41 79.60 74.06 31.93 76.10 54.84 12.05 4.26 38.73 1.93 2.52 2.44 16 Ix_SR2 SilentIntronRegion 0 9.16 3.49 4.33 8.96 16.62 9.59 76.27 10.32 8.42 14.38 50.55 158.83 128.52 104.32 47.85 104.44 90.38 18.58 8.59 44.34 1.62 5.62 6.24 17 Ix_AR3 ActiveIntronRegion 0 12.32 13.69 8.13 15.30 27.17 9.41 80.51 9.70 9.03 19.51 59.76 159.97 162.73 106.70 53.08 115.63 97.94 28.43 8.00 50.98 2.76 5.23 6.03 18 Ix_AR4 ActiveIntronRegion 0 14.49 21.79 8.25 13.60 29.20 8.82 83.67 15.97 13.33 20.69 60.79 153.02 153.24 100.50 41.01 107.04 89.58 19.09 6.48 47.39 2.18 6.72 6.55 19 E3_Aa NovelBoundary 0 7.11 33.55 17.95 9.79 16.21 37.76 101.57 18.40 17.10 23.42 80.81 122.59 161.19 140.62 76.27 165.77 149.42 45.64 4.24 68.58 8.09 2.76 3.59 20 ER3a ExonRegion 1 18.35 40.52 11.46 15.15 38.10 20.24 79.89 17.43 18.39 31.55 142.76 178.42 189.52 212.16 61.85 268.84 173.43 95.62 17.70 85.98 16.58 6.83 19.69 21 E3a_E4a KnownJunction 1 3.26 42.23 11.29 18.58 102.72 58.72 180.10 27.93 20.43 36.40 140.40 135.94 150.48 314.26 78.99 340.59 181.86 110.35 12.61 74.85 16.68 11.76 16.39 22 ER4a ExonRegion 1 16.63 32.71 13.07 20.72 66.39 51.45 141.15 28.41 24.62 59.89 161.56 197.42 174.81 292.35 71.31 340.19 214.79 120.41 13.46 107.78 20.88 14.51 9.88 23 E4a_E5a KnownJunction 1 9.63 28.35 18.10 33.30 54.75 43.33 127.01 45.35 19.30 78.76 189.26 190.26 194.95 346.64 38.20 287.62 240.11 126.56 12.80 99.14 35.27 8.14 19.55 24 Ix_AR1 ActiveIntronRegion 0 2.10 2.93 1.23 4.41 1.80 1.12 17.86 5.58 4.01 5.92 15.24 49.77 44.51 8.62 6.69 26.98 19.13 4.94 1.79 7.53 0.62 0.94 0.99 25 Ix_SR2 SilentIntronRegion 0 2.89 3.86 1.03 5.24 3.54 0.63 15.80 4.38 1.14 3.13 19.43 27.20 31.19 12.08 5.20 45.65 35.45 5.36 0.60 8.68 1.65 1.12 1.18 26 ER5a ExonRegion 1 21.27 35.52 18.83 23.32 51.17 42.35 138.07 35.09 20.79 69.72 186.30 214.13 207.08 310.49 69.17 340.17 264.48 138.36 24.93 104.29 28.40 13.50 10.14 27 E5a_E6a KnownJunction 1 38.08 53.61 21.02 25.24 50.68 24.08 143.97 38.94 18.23 84.83 250.75 132.34 170.44 306.20 62.92 264.46 286.58 124.48 38.87 126.68 16.49 7.78 21.60 28 ER6a ExonRegion 1 18.40 34.00 17.89 22.41 48.53 31.01 100.72 28.95 24.99 64.30 171.92 217.72 135.04 226.67 49.14 271.27 231.30 88.73 27.98 64.92 14.08 6.46 13.76 29 E6a_E7a KnownJunction 1 22.74 34.73 14.28 25.47 65.28 42.93 169.63 35.45 41.00 77.52 156.57 75.77 114.60 211.26 49.69 218.66 246.66 65.70 34.35 55.67 14.33 9.00 7.26 30 ER7a ExonRegion 1 29.26 42.79 17.75 16.54 66.21 56.50 165.80 27.91 32.13 68.01 203.03 214.07 206.17 273.20 80.22 244.76 225.40 64.75 26.99 88.82 6.31 10.92 10.95 31 E7a_E8a KnownJunction 1 24.08 20.72 15.46 17.78 29.37 47.19 72.38 17.46 25.03 52.86 144.35 155.15 81.00 163.22 47.47 146.71 168.12 42.95 11.77 80.86 3.15 5.63 12.21 32 E7a_E9a NovelJunction 0 0.00 3.35 7.72 0.00 8.32 0.00 30.83 1.77 5.03 8.19 7.32 6.30 13.47 4.59 9.64 16.32 16.74 4.15 0.00 6.52 3.03 0.00 0.00 33 Ix_AR2 ActiveIntronRegion 0 0.27 1.17 0.24 1.31 1.82 0.24 13.69 2.33 0.24 1.35 7.19 36.99 46.73 11.14 3.24 16.15 9.16 0.95 0.82 6.86 0.57 1.35 0.00 34 Ix_AR3 ActiveIntronRegion 0 2.38 4.65 2.32 3.92 3.44 7.63 15.58 1.83 1.31 6.34 36.24 41.86 39.69 40.33 14.21 51.60 34.17 10.61 4.78 5.15 1.83 3.46 3.30 35 Ix_AR4 ActiveIntronRegion 0 2.12 3.18 2.13 4.56 2.68 4.15 21.87 0.30 3.54 5.98 30.67 36.71 48.94 44.13 3.41 43.94 42.34 5.94 4.29 3.05 2.30 5.89 0.77 36 ER8a ExonRegion 1 28.71 21.07 14.15 22.04 40.78 21.71 88.88 14.15 21.88 56.10 184.13 198.64 175.01 210.75 53.86 236.90 198.88 58.45 22.09 78.89 6.08 8.42 14.97 37 E8a_E9a KnownJunction 1 12.74 34.20 14.58 17.85 36.16 15.73 164.29 11.13 23.47 57.30 198.37 210.67 170.77 284.48 70.46 186.79 249.37 63.55 32.47 79.39 3.15 5.57 8.71 38 ER9a ExonRegion 1 26.51 44.13 21.34 26.84 61.83 40.14 151.60 25.96 27.70 69.76 208.84 248.33 207.60 236.67 60.93 236.53 246.52 68.27 14.85 111.62 7.19 13.05 14.62 39 E9a_E10a KnownJunction 0 31.71 50.85 12.68 24.81 54.67 46.85 195.33 13.55 21.38 55.07 164.20 188.46 230.18 208.25 67.87 232.67 221.41 40.96 9.32 99.01 5.87 13.90 20.74 40 ER10a ExonRegion 1 28.43 43.09 18.61 31.68 67.76 58.24 184.17 36.02 36.22 64.66 205.20 333.49 313.22 246.30 55.91 254.32 220.71 70.26 18.60 112.25 9.23 13.35 13.57 41 E10a_E11a KnownJunction 1 40.16 62.75 16.11 38.99 70.03 59.68 174.80 43.50 38.45 55.50 199.26 314.05 278.23 265.76 43.51 247.29 191.58 63.84 20.99 111.98 10.87 14.33 7.09 42 ER11a ExonRegion 1 35.82 41.40 23.72 51.18 59.06 43.47 154.67 39.14 26.96 74.86 213.43 286.23 273.30 252.04 62.61 238.17 254.37 68.82 22.85 114.34 7.64 16.10 15.37 43 E11a_E12a KnownJunction 1 24.52 57.62 31.10 40.59 86.25 42.70 231.28 33.15 26.79 63.96 255.17 392.98 328.87 258.64 61.44 289.75 284.71 47.09 17.51 111.34 6.05 19.78 4.35 44 E11a_E13a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 0.00 2.53 10.16 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 12.53 0.00 0.00 0.00 45 E12_Aa NovelBoundary 1 6.45 0.00 11.38 4.46 19.35 0.00 49.86 5.09 0.00 14.48 15.48 45.46 99.51 33.49 11.13 26.15 16.08 3.77 0.00 17.26 5.68 0.00 0.00 46 ER12a ExonRegion 1 44.09 50.53 18.29 39.13 90.91 54.26 172.01 48.53 29.21 67.69 183.67 348.90 248.29 208.04 48.30 231.49 227.33 47.90 18.14 86.18 5.30 13.81 13.83 47 E12a_E13a KnownJunction 1 19.93 41.90 19.28 42.49 111.71 56.10 114.65 41.48 14.96 70.16 158.30 277.44 200.96 246.93 38.32 184.14 240.21 25.08 13.46 84.50 5.99 13.17 4.35 48 Ix Intron 0 11.57 10.86 9.16 8.63 21.01 6.90 47.96 10.11 4.55 11.14 15.33 44.56 43.21 30.59 12.05 34.04 24.05 8.01 4.64 15.16 1.07 1.52 2.62 49 Ix_AR1 ActiveIntronRegion 0 13.67 10.07 8.83 10.03 29.37 6.99 55.48 11.43 5.39 11.16 18.60 41.26 51.67 33.14 9.95 36.65 30.45 9.94 4.68 20.21 0.95 1.52 2.99 50 Ix_SR1 SilentIntronRegion 0 10.36 11.51 9.49 7.85 15.98 6.90 43.78 9.38 4.06 11.26 13.44 47.18 38.25 29.27 13.54 32.73 20.30 6.87 4.68 12.11 1.16 1.54 2.41 51 E13_Aa NovelBoundary 0 13.93 3.35 8.04 10.65 39.73 19.59 75.21 24.07 6.37 28.10 23.11 81.78 69.15 48.86 4.45 20.17 38.43 6.18 4.33 20.77 2.72 10.72 0.00 52 ER13a ExonRegion 1 33.86 40.61 17.95 37.66 88.43 41.67 164.81 49.40 32.97 69.09 212.43 376.94 296.38 261.17 77.44 248.41 218.76 48.58 18.14 104.50 4.91 24.43 17.71 53 E13a_E14a KnownJunction 1 30.75 65.25 23.80 39.95 57.30 49.18 201.12 58.37 59.03 71.96 227.64 430.94 258.59 283.77 80.35 333.93 197.10 51.03 24.28 114.22 5.13 21.68 26.29 54 ER14a ExonRegion 1 44.67 69.75 26.99 36.72 98.41 55.42 222.89 56.94 43.49 94.49 276.16 355.50 275.44 268.62 75.27 293.83 263.73 53.28 32.58 113.43 10.10 21.78 22.17 55 E14a_E15a KnownJunction 0 55.49 86.30 40.51 44.28 189.47 102.95 334.53 63.25 49.02 99.07 268.70 357.42 322.38 330.27 119.91 347.60 258.53 54.59 17.41 142.09 7.91 37.78 19.97 56 ER15a ExonRegion 0 75.71 74.98 59.71 71.74 161.64 77.19 247.92 100.07 44.00 127.57 197.12 280.67 233.52 215.96 172.98 234.50 190.86 56.24 25.53 95.67 7.14 20.11 11.85 57 E15_Da KnownBoundary 0 25.04 53.74 20.02 27.47 80.90 10.68 106.43 46.41 7.26 51.04 43.06 65.27 66.23 65.63 73.55 47.94 46.00 8.46 18.64 24.35 2.78 0.00 11.61 58 ER15b ExonRegion 0 19.18 26.49 19.90 23.33 32.32 14.32 47.95 25.83 5.65 29.23 40.01 21.09 17.81 57.70 64.87 68.66 52.89 30.65 9.03 31.62 4.91 4.40 4.69