Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNASEH1 Gene 0 45.26 46.01 75.26 49.21 66.97 73.71 91.76 28.61 38.31 53.50 101.44 73.78 45.90 111.82 112.07 80.79 79.15 81.81 80.41 81.24 82.84 65.21 59.34 2 315212 Transcript 0 19.64 72.56 114.52 23.37 34.43 18.20 42.03 18.98 24.59 81.70 146.52 18.16 14.01 101.37 78.96 79.23 93.28 51.28 115.57 98.77 82.35 32.71 30.08 3 454734 Transcript 0 0.43 0.41 6.53 1.37 2.63 0.18 4.67 0.00 0.19 0.18 0.58 0.80 0.39 1.00 0.21 0.30 1.00 0.78 0.64 2.03 0.22 0.00 0.89 4 436842 Transcript 0 41.27 22.38 21.18 18.96 30.54 31.61 42.66 11.47 15.56 23.46 17.92 15.47 16.64 26.71 23.72 25.01 18.03 36.74 44.08 33.98 31.00 29.81 21.33 5 464986 Transcript 0 2.13 5.19 5.42 6.18 8.03 4.13 4.68 6.89 2.44 4.05 8.80 1.29 2.54 14.59 12.44 10.96 6.73 5.19 12.65 6.12 6.40 5.52 5.85 6 ER1a ExonRegion 0 2.91 1.86 0.82 1.45 7.15 28.45 9.16 0.46 1.53 1.67 2.43 0.00 0.10 5.61 4.02 0.80 2.08 2.87 10.25 4.70 2.53 0.46 1.69 7 E1_Ab KnownBoundary 0 28.52 11.18 3.61 1.33 34.13 49.80 82.72 4.39 2.55 3.81 37.75 0.00 0.00 27.67 41.29 14.01 23.28 22.72 48.00 23.78 36.51 12.74 28.77 8 ER1b ExonRegion 1 26.28 33.77 11.63 9.32 50.78 91.78 95.23 0.60 8.07 14.59 73.85 4.13 5.34 54.16 76.58 48.11 74.00 23.25 43.48 29.99 67.29 26.26 39.06 9 E1_Ac KnownBoundary 1 56.60 27.17 27.41 20.98 82.51 161.27 91.11 0.00 17.25 33.85 86.65 11.70 18.02 54.56 63.54 81.26 106.03 45.76 60.24 41.48 74.63 31.60 51.39 10 ER1c ExonRegion 1 20.49 51.66 34.01 21.34 40.91 57.26 73.48 11.05 19.19 34.20 126.79 15.76 18.40 72.18 63.73 69.86 102.20 60.47 52.35 70.88 99.07 30.83 36.71 11 E1_Da KnownBoundary 0 0.00 0.00 0.00 3.56 3.57 0.00 0.00 2.55 1.42 0.00 2.42 0.00 0.00 2.47 0.00 0.00 0.00 1.91 0.00 0.00 0.00 3.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 6.09 1.86 0.00 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 1 36.38 143.26 228.23 45.28 61.71 7.95 74.90 37.50 47.66 161.74 290.60 36.31 27.92 197.13 153.90 157.65 184.48 99.70 220.90 192.84 162.17 64.97 58.47 14 ER1d ExonRegion 0 0.04 0.87 2.93 1.67 1.15 3.43 3.27 0.86 0.84 3.67 2.20 0.02 0.00 1.51 0.49 1.49 0.71 2.37 3.45 3.79 0.97 1.91 0.64 15 E1b_E3a KnownJunction 0 0.00 0.00 10.20 2.76 3.99 2.56 10.51 4.15 2.92 10.83 0.00 0.00 0.00 10.07 0.00 3.93 0.00 6.92 12.99 9.52 0.00 8.88 0.00 16 ER2a ExonRegion 0 1.28 1.23 5.79 2.25 3.55 0.55 3.16 0.00 0.56 0.53 1.75 2.41 1.17 3.01 0.64 0.90 3.01 0.81 1.92 2.82 0.67 0.00 2.66 17 E2a_E3a KnownJunction 0 0.00 0.00 7.72 0.00 4.33 0.00 6.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 3.26 0.00 0.00 0.00 18 ER3a ExonRegion 1 13.63 14.34 92.94 50.03 54.48 81.71 54.19 33.47 51.96 67.73 197.07 37.17 43.06 194.42 193.96 184.94 143.25 158.67 110.94 119.52 148.81 80.27 92.99 19 E3a_E4a KnownJunction 1 18.00 137.15 220.96 44.55 276.66 286.54 311.52 35.86 60.91 161.76 191.05 39.16 84.57 145.62 137.22 178.76 169.33 146.70 65.32 281.81 118.80 61.91 73.75 20 ER4a ExonRegion 0 39.09 54.25 91.66 45.10 59.40 115.95 112.68 37.05 57.03 61.16 190.31 83.97 50.54 217.45 235.00 131.75 173.05 133.24 83.59 100.13 156.78 85.97 82.37 21 E4a_E5a KnownJunction 0 69.72 305.67 274.71 67.86 126.32 27.03 146.71 55.61 64.99 165.17 189.73 73.37 85.55 191.60 282.71 190.38 167.84 185.34 80.85 268.13 144.56 98.40 50.71 22 I4_SR1 SilentIntronRegion 0 8.54 1.64 7.01 6.38 6.82 4.96 11.19 7.59 3.77 6.73 6.10 15.38 16.96 6.87 7.58 11.05 8.21 8.95 6.13 6.67 3.95 6.40 5.63 23 ER5a ExonRegion 0 63.13 46.32 109.91 51.71 68.52 56.11 81.16 47.44 52.27 75.79 203.36 100.23 72.77 250.10 239.19 164.49 142.24 162.47 113.26 135.61 161.07 98.01 95.52 24 E5_Da KnownBoundary 0 3.33 0.00 4.73 1.33 0.00 0.00 2.03 0.00 0.00 1.48 2.26 0.00 0.00 0.00 0.00 0.00 0.00 10.07 0.00 2.81 2.84 3.00 7.09 25 E5_Db KnownBoundary 0 3.63 0.00 6.00 1.56 3.57 0.00 0.00 12.08 0.00 1.42 0.00 6.15 0.00 0.00 4.45 0.00 0.00 0.00 8.66 2.62 0.00 5.02 3.59 26 E5b_E6a KnownJunction 0 71.64 251.27 264.04 66.62 202.12 94.83 192.15 46.91 78.33 160.58 165.83 101.73 83.60 304.43 217.94 152.01 138.76 164.74 105.70 200.06 106.38 90.32 94.50 27 ER5b ExonRegion 0 50.80 44.74 128.66 61.33 115.06 106.36 116.51 60.50 67.93 69.96 177.83 112.57 93.80 290.72 240.80 163.47 171.65 168.15 101.93 108.51 119.00 93.76 123.34 28 ER5c ExonRegion 0 2.13 5.19 5.42 6.18 8.03 4.13 4.68 6.89 2.44 4.05 8.80 1.29 2.54 14.59 12.44 10.96 6.73 5.19 12.65 6.12 6.40 5.52 5.85 29 E5_Dc NovelBoundary 0 10.30 5.53 1.48 2.06 7.30 7.61 2.25 11.99 4.60 6.88 6.84 0.00 6.82 7.42 36.71 12.73 18.05 15.50 4.24 3.13 8.59 8.70 24.84 30 I5 Intron 0 7.59 7.29 9.82 10.70 18.59 7.61 11.43 4.33 4.33 7.09 4.33 4.40 3.99 12.66 11.04 5.66 9.25 6.90 7.85 6.68 3.95 7.47 10.53 31 I5_SR1 SilentIntronRegion 0 7.44 7.56 10.92 10.66 17.93 8.18 12.23 4.38 5.02 7.21 5.12 4.22 4.13 14.27 11.53 7.22 10.85 8.09 9.22 6.15 4.41 8.37 12.34 32 I5_SR2 SilentIntronRegion 0 8.03 6.30 5.68 10.74 21.23 5.13 8.31 4.00 1.83 6.29 1.31 5.12 3.13 6.32 9.36 0.00 3.62 2.44 2.36 8.81 2.42 4.26 3.92 33 E6_Aa NovelBoundary 0 36.45 10.06 22.94 14.72 30.56 53.49 46.50 3.98 1.68 13.73 12.11 29.71 31.33 13.36 9.64 8.46 8.42 0.00 4.80 5.88 2.41 14.02 19.97 34 ER6a ExonRegion 0 62.69 62.71 154.33 71.79 147.99 143.40 116.65 54.74 69.21 96.19 212.79 98.95 94.65 324.23 303.73 181.79 156.10 147.99 110.85 138.53 130.78 107.62 97.18 35 E6a_E7a KnownJunction 0 128.32 288.44 275.15 90.00 243.97 116.30 174.84 58.16 71.61 169.85 231.80 83.13 98.53 263.64 352.80 167.48 201.87 150.52 115.67 313.00 108.91 111.20 75.46 36 I6_SR2 SilentIntronRegion 0 6.46 8.49 8.21 11.52 10.85 11.05 22.53 4.25 1.73 6.72 3.78 11.00 16.89 2.80 2.49 9.86 2.60 0.83 2.88 5.86 2.63 6.86 0.99 37 E7_Aa NovelBoundary 1 5.78 12.63 21.73 35.93 7.98 13.80 29.01 12.82 7.81 14.61 2.42 11.40 35.22 2.47 8.90 0.00 4.68 4.60 4.42 8.63 0.00 2.33 3.24 38 ER7a ExonRegion 0 73.43 217.04 272.52 93.64 177.10 107.05 228.92 53.64 69.25 154.43 318.13 127.59 128.67 327.50 336.85 199.13 199.30 126.95 137.76 237.00 124.42 120.82 118.61 39 E7_Da NovelBoundary 0 10.45 2.57 30.42 14.52 0.00 7.38 26.85 20.58 8.77 12.03 10.21 20.41 12.50 5.30 14.71 23.93 9.44 8.87 0.00 19.94 10.63 0.00 4.27 40 E7a_E8a KnownJunction 0 43.64 56.90 288.96 89.80 69.86 104.37 175.64 56.35 59.92 153.95 308.66 171.81 118.66 332.10 355.28 155.51 176.16 113.50 171.58 174.11 86.43 73.48 95.44 41 I7_SR1 SilentIntronRegion 0 0.26 1.73 9.13 7.76 10.46 5.61 9.19 3.20 0.00 2.40 6.33 18.50 13.36 9.65 3.52 11.98 8.30 2.18 2.22 5.09 1.80 1.26 3.20 42 E8_Aa NovelBoundary 1 6.30 6.18 34.00 21.08 10.70 6.47 14.00 30.81 2.72 7.33 2.32 38.86 13.64 16.66 8.90 11.62 9.16 3.65 0.00 8.05 2.53 5.20 7.77 43 ER8a ExonRegion 0 51.73 71.99 209.65 123.51 93.48 98.44 173.49 64.92 87.24 126.77 339.83 238.12 136.80 333.20 337.01 215.25 234.97 189.03 161.26 177.11 159.99 132.86 124.63 44 E8_Da NovelBoundary 0 21.78 252.72 166.29 5.73 65.87 10.90 170.56 10.88 4.57 114.67 4.63 17.11 0.00 3.00 0.00 0.00 0.00 6.43 0.00 124.32 0.00 0.00 0.00 45 E8a_E9a KnownJunction 0 77.94 57.88 233.11 159.49 109.51 76.32 185.53 57.05 86.14 127.46 315.87 199.72 118.99 331.75 348.97 265.14 173.82 195.78 241.80 148.54 141.41 172.80 160.82 46 ER9a ExonRegion 0 70.57 69.46 126.24 94.95 122.40 126.93 164.98 50.55 66.01 88.61 120.95 156.96 76.08 142.40 142.61 104.56 96.68 118.16 131.95 123.92 118.53 115.60 98.67 47 E9_Da KnownBoundary 0 140.02 62.95 53.04 52.84 85.99 199.37 205.36 31.38 41.87 56.49 47.06 47.72 53.08 85.23 59.83 76.73 46.56 52.19 166.69 68.77 51.03 101.04 99.02 48 ER9b ExonRegion 0 123.78 66.26 50.39 52.44 86.50 88.84 114.20 29.39 42.92 55.89 51.55 46.40 49.93 68.57 70.67 69.61 53.37 100.91 115.80 88.63 92.04 78.65 63.36