Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM84A Gene 0 11.94 39.51 33.63 1070.08 23.86 45.02 26.55 39.02 53.78 26.35 0.19 0.66 2.14 0.00 0.03 0.00 4.42 85.80 18.94 27.74 25.46 52.90 13.53 2 295092 Transcript 0 2.33 9.13 10.14 299.22 3.93 5.76 3.81 13.14 32.33 13.10 0.01 0.17 0.27 0.00 0.00 0.00 1.70 137.85 27.75 15.65 8.42 71.32 29.22 3 331243 Transcript 0 0.00 0.14 1.69 36.12 0.00 0.13 0.09 4.27 3.84 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.92 0.89 1.73 8.41 16.43 6.70 4 359969 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 497769 Transcript 0 8.30 55.01 34.25 1362.92 28.89 41.88 19.89 37.37 31.29 17.96 0.00 0.21 2.09 0.00 0.03 0.00 1.28 100.88 27.37 16.84 12.06 24.69 5.33 6 464947 Transcript 0 2.50 2.71 2.24 125.59 2.48 9.05 3.38 5.42 5.74 2.83 0.00 0.00 0.23 0.00 0.12 0.00 2.47 11.37 3.59 5.70 1.90 4.39 1.74 7 IG35 Intergenic 0 0.09 0.92 0.67 20.99 0.75 0.40 0.63 0.67 0.24 0.29 0.00 0.15 0.00 0.00 0.00 0.00 0.00 1.21 0.21 0.64 0.00 0.18 0.00 8 IG35_SR1 SilentIntergenicRegion 0 0.00 0.30 0.54 24.23 0.95 0.00 0.97 1.51 0.21 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.31 0.00 0.00 0.00 9 IG35_AR1 ActiveIntergenicRegion 0 0.00 1.85 0.00 31.47 2.55 0.23 1.10 0.52 0.28 0.43 0.00 0.45 0.00 0.00 0.00 0.00 0.00 1.62 0.80 0.80 0.00 0.00 0.00 10 IG35_SR2 SilentIntergenicRegion 0 0.13 0.82 0.87 17.66 0.25 0.52 0.44 0.52 0.23 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.10 0.67 0.00 0.26 0.00 11 ER1a ExonRegion 0 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 3.64 4.45 7.00 142.29 3.49 18.69 9.92 13.13 26.59 13.25 0.00 0.00 0.00 0.00 0.00 0.00 4.47 136.16 20.78 22.60 40.88 50.19 31.26 13 E1a_E2a KnownJunction 0 0.00 0.00 1.30 32.10 0.00 0.00 0.00 6.98 1.56 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 3.26 5.44 29.94 12.63 14 E1a_E3a KnownJunction 0 0.00 6.12 18.60 469.90 0.00 7.89 0.00 24.03 76.30 30.30 0.00 0.00 0.00 0.00 0.00 0.00 4.39 404.05 76.99 37.33 21.44 179.41 83.23 15 I1_SR1 SilentIntronRegion 0 0.00 1.07 4.75 31.62 1.27 1.94 0.87 0.34 2.74 1.40 0.00 0.00 0.00 0.00 0.00 0.00 1.31 18.38 3.30 1.19 3.20 5.19 2.33 16 ER2a ExonRegion 0 0.00 0.43 3.77 34.57 0.00 0.38 0.28 3.45 6.12 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 2.67 1.94 8.42 10.54 3.12 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 41.69 0.00 0.00 0.00 2.38 3.82 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.32 0.00 0.00 11.37 8.82 4.35 18 ER3a ExonRegion 0 0.00 4.78 11.62 426.73 3.04 9.37 1.22 28.50 69.33 20.68 0.00 0.00 0.00 0.00 0.00 0.00 3.21 444.36 38.57 41.17 45.21 116.06 70.64 19 E3_Ab KnownBoundary 0 0.00 6.38 7.30 526.31 7.81 15.90 2.25 32.86 81.63 18.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 508.92 14.02 44.68 58.63 85.11 67.35 20 ER3b ExonRegion 0 0.77 5.34 17.27 234.98 3.84 23.49 9.04 21.02 46.51 32.42 0.46 0.00 0.91 0.00 0.00 0.00 3.40 146.12 12.14 23.48 64.08 41.26 19.26 21 E3_Da KnownBoundary 0 0.00 12.10 15.88 171.11 0.00 32.20 6.58 0.00 26.68 18.29 0.00 0.00 0.00 0.00 0.00 0.00 7.76 114.25 8.09 35.15 62.58 52.78 7.85 22 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3c ExonRegion 0 2.24 9.23 16.85 198.91 1.27 23.08 7.81 14.25 37.50 29.86 0.00 0.00 1.18 0.00 0.00 0.00 8.20 108.73 11.73 19.62 38.89 45.26 14.60 24 E3_Ac KnownBoundary 0 3.78 23.02 41.69 411.80 4.33 36.74 17.05 34.01 92.94 52.33 0.00 0.00 0.00 0.00 0.00 0.00 17.30 240.80 12.99 40.84 56.16 51.80 19.12 25 ER3d ExonRegion 0 1.55 9.56 33.00 418.57 5.44 31.91 12.69 24.45 66.50 34.76 0.00 1.92 0.48 0.00 0.00 0.00 13.26 205.24 21.43 34.73 71.27 60.20 24.09 26 E3_Ad KnownBoundary 0 13.11 11.05 39.44 672.18 0.00 14.48 12.50 46.00 51.62 51.17 0.00 0.00 0.00 0.00 0.00 0.00 13.18 135.01 0.00 34.32 39.66 41.52 7.94 27 ER3e ExonRegion 0 6.92 18.37 32.70 669.89 6.71 28.23 18.23 29.77 66.91 38.41 0.00 3.66 1.23 0.00 0.00 0.00 18.72 191.77 28.12 57.73 90.89 64.09 21.90 28 E3_Db KnownBoundary 0 3.33 23.61 43.82 1142.11 0.00 61.39 38.02 56.85 86.52 62.86 0.00 5.40 0.00 0.00 0.00 0.00 26.83 309.12 30.21 60.53 96.00 98.16 28.85 29 ER3f ExonRegion 0 7.90 23.45 48.16 1367.61 14.38 78.59 25.06 59.95 118.29 61.45 0.70 1.73 2.78 0.00 0.00 0.00 8.64 349.47 50.57 75.26 100.52 107.11 39.56 30 E3_Ae KnownBoundary 0 3.56 27.03 70.43 1879.91 11.71 87.05 46.37 78.25 143.55 73.33 0.00 0.00 0.00 0.00 0.00 0.00 13.46 442.06 111.44 84.12 127.45 103.85 37.73 31 ER3g ExonRegion 0 7.39 26.38 38.57 1040.49 21.86 98.24 27.13 43.66 87.13 48.60 0.00 0.00 2.03 0.00 0.00 0.00 13.98 277.32 40.59 63.01 80.58 84.41 42.46 32 E3_Dc KnownBoundary 0 7.41 35.91 40.03 909.87 23.68 80.86 31.80 37.17 72.05 39.70 0.00 0.00 6.66 0.00 0.00 0.00 17.02 213.69 22.21 74.85 84.70 127.18 32.10 33 E3c_E4a KnownJunction 0 6.74 0.00 0.00 170.21 0.00 11.58 4.06 9.12 8.16 5.53 0.00 0.00 0.00 0.00 0.00 0.00 8.23 28.89 4.71 2.43 0.00 11.88 0.00 34 E3c_E7a KnownJunction 0 3.33 8.81 20.19 279.09 16.72 4.83 6.76 8.91 7.58 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.60 8.75 0.00 8.90 6.25 0.00 35 ER3h ExonRegion 0 32.71 70.81 78.79 1972.45 55.22 112.63 73.82 84.77 120.91 53.99 0.70 0.90 6.95 0.00 0.00 0.00 8.60 88.55 29.03 55.42 31.34 105.07 20.81 36 E3_Dd KnownBoundary 0 6.96 28.74 28.95 706.04 7.81 18.51 37.10 40.21 53.21 19.66 2.26 0.00 0.00 0.00 0.00 0.00 0.00 38.43 13.65 33.43 5.68 96.63 43.62 37 ER3i ExonRegion 0 6.98 21.28 11.81 426.75 11.78 9.40 11.43 15.39 20.69 8.99 0.03 0.52 0.81 0.00 0.00 0.00 0.72 9.50 6.25 9.63 3.82 34.54 4.42 38 ER4a ExonRegion 0 1.63 4.76 3.33 150.93 0.02 13.83 4.02 5.77 11.59 3.28 0.00 0.00 1.81 0.00 0.96 0.00 3.88 24.83 8.07 7.07 1.03 5.47 5.42 39 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E4a_E7a NovelJunction 0 0.00 3.35 0.00 83.74 0.00 15.67 0.00 7.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 3.26 0.00 5.45 0.00 41 I4 Intron 0 0.75 9.08 1.06 141.50 6.64 12.17 7.31 8.89 14.29 5.23 0.05 0.00 0.72 0.00 0.00 0.00 2.19 18.13 6.06 13.37 2.89 10.42 2.69 42 I4_AR1 ActiveIntronRegion 0 0.65 3.86 0.21 106.90 3.31 11.71 6.17 8.47 14.42 4.25 0.00 0.00 0.90 0.00 0.00 0.00 1.84 19.79 4.15 11.26 1.10 7.83 2.94 43 I4_SR2 SilentIntronRegion 0 0.82 11.16 1.12 167.37 7.60 13.45 7.56 10.22 16.11 5.48 0.09 0.00 0.81 0.00 0.00 0.00 2.61 19.69 7.16 14.91 4.00 11.16 2.88 44 I4_AR2 ActiveIntronRegion 0 1.30 12.18 1.52 157.96 13.03 12.40 11.85 10.36 11.16 7.48 0.00 0.00 1.37 0.00 0.00 0.00 0.68 8.34 7.18 18.39 0.45 13.67 1.80 45 E5_Aa NovelBoundary 0 0.00 8.09 11.65 456.29 12.82 27.03 0.00 41.90 38.22 6.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.73 22.02 29.15 0.00 15.12 0.00 46 ER5a ExonRegion 0 0.00 4.56 0.80 133.96 4.71 21.82 8.17 4.65 8.98 4.49 0.00 0.00 0.00 0.00 0.00 0.00 2.90 14.80 5.60 18.60 1.94 7.29 5.16 47 E5_Da NovelBoundary 0 3.26 8.55 6.50 393.79 0.00 26.97 18.46 31.79 38.34 14.85 0.00 0.00 0.00 0.00 0.00 0.00 4.02 24.75 18.07 11.76 0.00 8.21 0.00 48 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 I5 Intron 0 1.17 10.15 1.52 204.91 18.54 19.31 9.17 15.71 17.86 5.21 0.00 1.98 1.07 0.00 0.00 0.00 2.74 10.22 12.36 15.33 2.44 12.13 3.26 50 I5_AR1 ActiveIntronRegion 0 1.45 12.65 0.89 235.29 21.52 24.29 11.29 18.98 20.00 6.72 0.00 3.11 1.68 0.00 0.00 0.00 4.12 8.76 13.91 18.33 2.83 12.66 3.29 51 I5_SR1 SilentIntronRegion 0 0.72 5.94 2.70 156.48 13.75 10.95 5.64 10.29 14.54 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.36 13.16 9.95 10.41 1.83 11.51 3.30 52 E6_Aa NovelBoundary 0 0.00 22.43 4.70 346.24 25.64 2.90 19.39 17.99 21.87 14.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.40 12.52 20.58 0.00 3.12 0.00 53 ER6a ExonRegion 0 1.74 3.35 2.06 31.43 4.49 15.41 5.55 3.15 1.04 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 5.55 8.72 3.09 1.92 0.00 54 E6_Da NovelBoundary 0 0.00 5.92 1.24 489.32 10.70 13.69 5.34 14.66 20.02 11.82 0.00 12.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 5.50 0.00 0.00 4.10 55 E6a_E7a KnownJunction 0 0.00 0.00 6.56 66.76 0.00 0.00 0.00 2.55 1.62 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 2.84 0.00 0.00 56 I6 Intron 0 3.34 15.89 5.16 501.09 18.80 31.08 12.74 25.72 19.40 9.09 0.00 0.00 0.38 0.00 0.13 0.00 1.08 25.46 12.24 16.56 3.47 10.95 3.95 57 I6_SR1 SilentIntronRegion 0 0.15 7.67 0.84 270.01 13.43 20.72 11.52 17.28 15.52 4.78 0.00 0.00 1.95 0.00 0.00 0.00 0.00 15.37 9.49 14.51 1.20 9.04 4.94 58 I6_AR1 ActiveIntronRegion 0 0.51 17.38 3.54 521.47 22.02 33.84 12.89 27.70 21.59 11.74 0.00 0.00 0.99 0.00 0.00 0.00 0.42 31.07 11.91 25.01 3.09 15.37 3.65 59 I6_SR2 SilentIntronRegion 0 2.36 13.55 4.62 420.36 14.16 29.32 12.72 21.54 23.31 9.49 0.00 0.00 0.00 0.00 0.72 0.00 1.74 11.35 11.75 13.40 2.07 11.68 4.19 60 I6_AR2 ActiveIntronRegion 0 4.34 21.89 6.23 643.55 25.34 36.81 11.73 37.58 23.98 8.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.82 10.64 14.25 4.80 11.88 2.48 61 I6_AR3 ActiveIntronRegion 0 6.47 6.22 8.25 637.83 15.11 63.81 10.55 23.54 22.89 12.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.08 11.24 11.39 3.37 8.82 0.60 62 I6_AR4 ActiveIntronRegion 0 5.05 14.47 10.87 442.20 10.27 23.27 10.34 26.60 16.30 10.91 0.00 0.00 0.00 0.00 0.00 0.00 3.18 10.44 13.52 7.25 3.64 7.29 1.41 63 I6_SR3 SilentIntronRegion 0 6.74 15.12 5.82 502.11 18.28 26.72 14.87 19.54 11.45 6.23 0.00 0.00 0.00 0.00 0.00 0.00 2.00 35.59 14.99 15.50 4.68 6.32 6.24 64 E7_Aa NovelBoundary 0 2.96 55.78 16.71 1157.63 48.98 69.28 34.36 41.32 36.23 17.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84.23 25.32 30.62 8.71 19.59 12.38 65 ER7a ExonRegion 0 9.08 45.74 40.66 1323.34 25.48 64.10 17.13 46.49 40.68 20.15 0.00 0.00 0.00 0.00 0.00 0.00 3.97 195.34 38.06 29.09 18.32 23.67 7.55 66 E7_Da KnownBoundary 0 13.78 45.52 43.20 1182.07 16.04 59.97 44.34 40.50 46.79 24.74 0.00 0.00 0.00 0.00 0.00 0.00 8.98 195.74 21.65 33.49 16.31 23.27 3.76 67 E7a_E7b KnownJunction 0 9.85 9.01 5.20 451.42 10.61 9.77 5.26 18.15 14.53 5.13 0.00 0.00 0.00 0.00 0.00 0.00 4.77 15.75 4.80 8.76 6.30 8.57 3.33 68 ER7b ExonRegion 0 5.78 54.79 33.51 1113.86 21.37 59.66 20.84 36.76 34.30 23.24 0.00 0.00 4.58 0.00 0.00 0.00 2.34 185.36 47.60 25.73 18.17 30.38 8.06 69 E7_Ab KnownBoundary 0 13.63 45.91 33.65 1158.63 4.07 59.34 15.24 36.72 34.98 31.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 178.21 40.66 27.16 10.81 20.02 12.04 70 ER7c ExonRegion 0 15.46 52.26 38.44 1468.86 26.39 64.34 25.05 47.40 38.93 29.66 0.00 0.00 0.00 0.00 0.00 0.00 5.05 189.65 48.12 26.53 21.43 27.02 16.93 71 E7_Db KnownBoundary 0 13.34 57.69 39.41 1711.47 41.17 93.24 16.08 55.16 34.87 37.85 0.00 0.00 0.00 0.00 0.00 0.00 4.68 186.21 60.05 41.16 30.27 26.02 8.71 72 ER7d ExonRegion 0 15.79 101.44 49.04 2695.82 48.56 61.15 32.08 66.42 52.00 26.22 0.00 0.62 1.69 0.00 0.10 0.00 1.51 71.70 25.75 24.78 9.11 37.46 7.94 73 IG36_SR2 SilentIntergenicRegion 0 0.06 0.22 0.30 17.65 0.48 0.04 0.55 0.16 0.20 0.11 0.03 0.00 0.05 0.01 0.00 0.04 0.09 0.32 0.46 0.20 0.03 0.04 0.08