Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM18 Gene 0 57.29 75.50 100.76 81.65 63.26 75.84 68.05 43.11 41.58 53.07 57.07 32.75 25.13 40.56 47.99 34.20 29.10 51.11 47.86 55.29 28.40 39.82 32.36 2 281017 Transcript 0 19.01 27.68 30.75 19.39 18.93 35.21 23.60 8.84 12.05 12.86 20.65 15.90 27.42 18.68 15.45 7.60 8.95 11.56 17.55 20.23 8.28 6.48 9.97 3 432667 Transcript 0 0.00 0.00 10.85 1.47 0.00 12.44 9.58 4.31 2.89 2.69 0.00 0.00 6.82 0.00 0.00 0.00 4.68 0.00 0.00 5.18 5.81 2.33 0.00 4 461640 Transcript 0 1.23 0.00 5.94 1.82 0.00 10.30 2.41 3.91 3.66 5.04 5.36 0.00 2.29 4.68 10.81 4.53 8.41 18.26 3.22 8.56 2.68 2.06 6.57 5 405941 Transcript 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 3.16 3.46 2.57 4.24 0.00 0.00 0.00 0.00 6 477202 Transcript 0 9.52 3.43 5.89 1.75 5.61 14.16 11.92 2.62 3.48 5.78 13.79 1.34 0.67 8.42 7.87 5.40 7.47 12.27 2.73 11.44 9.02 3.34 4.40 7 418447 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 355654 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 497508 Transcript 0 6.96 6.16 11.79 10.96 5.99 8.69 14.37 8.75 4.15 9.38 16.02 6.38 6.01 13.59 11.60 11.58 8.41 17.92 5.89 9.65 11.10 10.68 11.27 10 ER1a ExonRegion 0 10.08 16.51 2.74 3.77 7.16 42.23 22.62 3.46 0.00 0.00 8.30 0.00 0.00 19.78 26.28 14.95 0.00 4.35 15.55 3.69 5.90 8.33 11.66 11 E1_Ab KnownBoundary 0 51.71 61.24 24.10 30.73 39.56 136.80 68.67 5.09 6.13 9.13 36.11 0.00 0.00 48.38 57.11 47.34 25.81 64.17 46.97 19.94 17.24 22.29 24.67 12 ER1b ExonRegion 1 45.75 45.83 85.12 51.42 16.95 94.54 66.63 25.19 26.88 35.63 40.31 4.55 7.66 22.56 37.72 21.57 18.11 39.21 48.49 31.90 30.68 24.13 45.66 13 E1a_E2e KnownJunction 0 0.00 0.00 10.85 1.47 0.00 12.44 9.58 4.31 2.89 2.69 0.00 0.00 6.82 0.00 0.00 0.00 4.68 0.00 0.00 5.18 5.81 2.33 0.00 14 E1a_E2g KnownJunction 1 34.23 28.28 67.56 28.17 3.99 17.89 16.08 8.63 7.67 18.32 37.64 33.76 77.27 25.02 15.20 0.00 16.64 15.05 21.55 23.20 14.83 3.31 11.18 15 E2_Aa NovelBoundary 0 0.00 0.00 6.42 3.20 4.16 8.01 2.08 4.03 6.86 7.12 7.48 0.00 6.82 4.94 14.09 11.71 0.00 20.19 0.00 0.00 5.81 0.00 17.24 16 ER2a ExonRegion 0 1.23 0.00 5.94 1.82 0.00 10.30 2.41 3.91 3.66 5.04 5.36 0.00 2.29 4.68 10.81 4.53 8.41 18.26 3.22 8.56 2.68 2.06 6.57 17 E2_Ab KnownBoundary 0 0.00 0.00 7.72 3.56 0.00 4.66 0.00 8.75 4.17 10.40 7.42 0.00 6.82 7.95 13.60 15.72 3.55 17.91 17.13 15.08 0.00 3.12 4.10 18 ER2b ExonRegion 0 1.81 1.02 6.77 5.09 2.36 4.80 1.70 6.38 6.79 8.63 10.91 0.00 1.12 13.73 10.91 5.38 6.60 24.50 9.86 8.05 2.57 3.17 5.31 19 E2_Ac KnownBoundary 0 3.48 3.35 3.10 5.09 3.90 2.90 4.11 2.46 6.71 3.09 7.05 0.00 0.00 22.13 13.35 0.00 3.65 15.84 4.80 2.88 2.78 2.94 8.11 20 E2_Ad KnownBoundary 0 0.00 0.00 15.49 5.89 0.00 2.27 3.80 2.55 5.15 6.45 24.69 0.00 0.00 7.00 6.30 8.03 8.42 16.17 14.31 5.56 8.96 5.57 0.00 21 ER2c ExonRegion 0 4.23 2.03 12.31 4.91 1.87 4.03 3.97 3.98 6.36 7.23 17.49 0.00 0.00 15.43 6.24 7.88 6.77 25.13 12.74 3.51 8.70 5.73 4.70 22 ER2d ExonRegion 0 1.74 1.56 12.29 3.43 0.00 9.47 3.86 4.14 6.18 10.59 18.73 1.97 0.41 11.63 2.82 12.59 14.37 23.67 2.90 5.54 9.11 3.74 0.95 23 E2_Da KnownBoundary 0 3.78 2.63 4.76 2.73 3.48 2.78 4.50 3.98 7.61 9.64 15.06 7.50 0.00 21.01 4.45 3.50 4.77 18.49 4.14 4.99 3.15 3.00 3.67 24 E2a_E2e KnownJunction 0 0.00 0.00 1.63 0.00 0.00 2.33 0.00 0.00 1.10 1.58 2.68 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 2.68 5.50 0.00 0.00 25 E2a_E2g KnownJunction 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 3.16 3.46 2.57 4.24 0.00 0.00 0.00 0.00 26 ER2e ExonRegion 0 9.52 3.43 5.89 1.75 5.61 14.16 11.92 2.62 3.48 5.78 13.79 1.34 0.67 8.42 7.87 5.40 7.47 12.27 2.73 11.44 9.02 3.34 4.40 27 E2_Ae KnownBoundary 0 12.45 0.00 6.33 6.53 16.30 16.52 11.13 4.03 3.33 10.45 21.79 0.00 0.00 4.77 14.46 11.11 7.76 9.95 4.80 29.59 10.87 2.82 3.33 28 ER2f ExonRegion 0 32.31 44.84 91.39 28.70 44.29 104.49 79.76 36.23 43.53 54.82 54.66 26.94 18.59 41.69 36.09 42.32 30.91 44.77 33.15 68.88 35.24 69.85 51.72 29 E2_Db KnownBoundary 1 33.56 23.09 42.43 23.77 37.95 63.03 63.29 17.42 32.61 36.02 22.90 64.82 25.32 31.37 32.88 47.51 30.67 36.11 17.04 58.42 32.37 37.54 39.35 30 E2b_E2g KnownJunction 0 10.45 5.92 21.44 5.36 15.11 15.67 15.90 11.25 11.98 18.62 12.32 0.00 0.00 10.42 33.99 17.17 8.98 7.71 9.13 9.33 10.69 14.14 23.73 31 ER2g ExonRegion 1 29.13 25.72 55.65 22.53 48.64 67.96 63.71 28.98 39.96 48.44 28.88 50.68 29.80 36.02 43.69 49.83 23.11 48.26 24.73 63.95 41.48 50.13 51.65 32 ER2h ExonRegion 0 13.06 28.06 33.52 14.89 19.06 29.70 45.20 14.49 21.09 23.50 20.60 26.79 17.77 31.73 28.90 22.89 14.21 35.27 9.80 36.45 29.01 28.42 23.31 33 E2_Ag KnownBoundary 0 25.12 24.67 25.34 3.16 7.89 26.97 58.91 7.23 15.19 15.07 25.32 12.60 0.00 21.66 13.35 7.86 12.72 11.81 18.17 39.12 28.48 19.41 25.10 34 E2_Dc KnownBoundary 1 49.79 55.12 127.08 45.52 41.51 75.87 68.05 43.74 37.24 56.25 123.50 24.31 6.82 57.98 76.89 36.06 61.15 75.24 52.24 89.10 61.28 60.13 51.22 35 ER2i ExonRegion 0 56.74 53.94 136.54 43.55 30.96 73.44 77.61 44.61 46.70 66.41 116.34 44.33 62.31 64.11 70.18 39.63 51.56 74.35 59.92 86.02 67.06 52.68 53.70 36 ER2j ExonRegion 1 37.64 62.12 210.04 97.89 51.26 79.32 82.89 68.49 71.64 88.24 328.52 15.11 21.79 112.48 117.13 55.89 160.45 112.68 107.12 133.96 156.72 82.89 50.04 37 E2_Dd KnownBoundary 1 51.94 81.63 266.99 165.78 78.61 88.76 126.26 86.26 89.24 109.14 398.73 11.85 33.76 96.59 151.06 76.13 242.26 125.15 174.59 174.37 206.40 100.97 65.99 38 ER2k ExonRegion 1 53.49 108.75 293.99 249.81 76.31 72.21 92.59 84.48 114.92 121.19 226.83 33.28 28.82 119.85 279.25 174.49 105.56 232.93 283.17 181.16 127.36 149.32 141.39 39 E2_De NovelBoundary 0 20.97 18.75 3.34 12.59 20.46 16.01 21.60 0.00 8.16 7.20 24.48 0.00 0.00 22.49 18.91 12.56 12.16 39.63 9.13 27.16 13.78 14.33 3.84 40 E2e_E3a KnownJunction 1 82.46 194.64 358.18 346.54 79.88 127.99 117.21 89.21 153.67 130.63 149.77 67.97 79.22 136.68 336.36 337.77 50.02 308.45 571.40 178.01 53.38 168.09 303.12 41 I2 Intron 0 9.35 6.58 7.46 9.65 9.97 13.13 12.91 6.32 5.59 10.64 18.24 7.91 6.78 12.11 8.94 9.81 10.09 19.84 7.04 16.05 10.91 15.71 11.40 42 I2_SR1 SilentIntronRegion 1 9.40 6.59 7.52 9.69 10.09 13.22 13.03 6.32 5.64 10.77 18.36 7.95 6.88 12.27 9.04 9.97 10.07 20.11 7.14 16.27 11.07 15.82 11.51 43 I2_AR1 ActiveIntronRegion 1 6.35 6.34 3.35 7.34 2.28 8.25 5.69 6.76 2.29 2.56 11.65 5.48 0.55 2.58 3.33 0.00 11.65 3.04 0.28 2.07 1.17 9.44 4.75 44 E3_Aa NovelBoundary 0 20.23 20.98 10.44 9.99 11.88 14.82 29.85 9.53 1.33 13.16 12.11 20.26 6.82 11.95 4.45 4.36 0.00 17.82 0.00 3.26 6.98 15.92 3.67 45 ER3a ExonRegion 1 75.54 188.27 415.91 311.65 141.72 165.24 135.26 92.96 133.41 119.07 132.00 79.90 93.03 144.19 210.58 198.86 78.20 240.61 276.08 156.94 50.44 122.28 210.80 46 E3_Da NovelBoundary 0 0.00 3.16 1.83 6.09 4.33 0.00 2.25 4.64 1.53 8.57 5.16 6.30 0.00 24.43 15.20 14.18 0.00 20.27 4.80 5.82 5.56 22.04 10.84 47 E3a_E4b KnownJunction 0 110.17 224.57 516.42 304.29 278.78 311.41 228.14 103.26 109.08 99.15 126.93 132.49 92.69 143.68 183.70 73.66 116.22 141.69 143.35 165.16 53.13 86.46 100.90 48 I3 Intron 0 5.43 2.89 7.27 6.79 3.55 4.70 7.33 7.66 6.24 8.53 12.74 4.20 6.44 12.32 9.25 10.07 6.50 22.53 8.02 10.62 10.09 10.69 8.07 49 I3_SR1 SilentIntronRegion 0 5.44 2.89 7.29 6.80 3.56 4.71 7.35 7.68 6.25 8.54 12.76 4.20 6.45 12.34 9.26 10.09 6.51 22.57 8.04 10.64 10.11 10.71 8.08 50 E4_Aa NovelBoundary 0 21.11 2.63 25.69 29.10 7.47 2.61 12.67 6.04 7.00 14.53 29.32 5.55 20.62 19.01 38.82 16.06 13.93 55.30 27.67 27.48 13.22 21.00 32.61 51 ER4a ExonRegion 0 6.96 6.16 11.79 10.96 5.99 8.69 14.37 8.75 4.15 9.38 16.02 6.38 6.01 13.59 11.60 11.58 8.41 17.92 5.89 9.65 11.10 10.68 11.27 52 E4_Ab KnownBoundary 0 21.86 12.56 15.64 23.11 45.42 15.96 43.81 12.32 5.87 8.81 14.53 0.00 0.00 29.61 23.24 21.53 4.77 12.60 0.00 11.44 10.75 13.53 25.01 53 ER4b ExonRegion 0 187.03 236.38 487.71 290.87 335.65 386.71 336.80 113.84 134.10 143.76 253.23 76.35 91.68 155.48 210.64 106.64 104.24 138.46 151.25 174.56 81.32 112.02 88.16 54 E4a_E5a KnownJunction 1 329.32 409.60 581.38 415.13 142.11 155.88 196.57 138.50 150.58 171.73 302.71 49.97 175.80 153.69 315.60 142.78 92.66 159.43 203.02 198.59 90.13 145.43 112.34 55 E5_Aa NovelBoundary 0 6.74 0.00 14.67 1.37 0.00 5.22 0.00 2.42 1.79 1.67 5.90 0.00 6.82 2.71 0.00 0.00 12.25 4.68 0.00 0.00 0.00 3.00 7.51 56 ER5a ExonRegion 0 248.10 290.95 497.89 349.81 215.88 182.67 190.95 161.33 153.66 185.78 286.94 172.51 144.98 198.07 290.62 143.07 137.32 176.55 191.10 185.90 131.66 157.74 111.58 57 E5_Da KnownBoundary 0 101.94 192.20 561.25 432.21 128.35 175.01 160.62 171.69 161.89 245.46 244.54 194.16 164.27 236.27 452.07 152.52 162.60 172.90 253.18 176.09 98.72 262.45 118.06 58 ER5b ExonRegion 0 211.15 220.88 293.57 234.33 191.77 159.49 151.96 111.95 100.09 143.30 154.00 161.52 98.40 114.62 184.67 84.38 66.80 92.69 137.57 93.11 61.76 119.99 55.73 59 E5_Db KnownBoundary 0 159.44 167.67 63.21 58.27 147.96 113.63 68.58 40.13 35.10 55.60 47.49 58.97 37.34 45.79 45.24 33.84 4.58 44.81 56.38 41.55 20.08 21.92 19.80 60 E5_Dc KnownBoundary 0 56.53 110.57 34.06 49.78 59.34 37.19 37.05 23.91 33.28 45.40 25.27 12.60 28.08 16.60 22.13 25.04 4.77 39.51 44.99 29.34 12.48 27.37 35.85 61 ER5c ExonRegion 1 99.76 137.36 59.49 67.03 95.96 87.86 55.06 43.76 46.54 67.20 42.61 28.34 34.11 27.98 32.31 31.88 3.30 61.82 46.48 44.49 21.24 27.09 24.16 62 ER5d ExonRegion 0 90.19 125.11 110.24 129.95 91.99 111.22 97.68 69.61 54.94 79.56 42.70 31.18 23.26 32.64 24.44 30.35 24.89 64.12 58.78 73.73 21.97 38.26 32.29 63 E5_Dd KnownBoundary 0 16.67 32.95 24.93 30.20 59.34 43.38 26.28 16.10 36.28 31.37 18.69 24.91 25.97 11.89 0.00 8.72 4.02 39.67 3.48 34.39 7.72 10.35 3.24 64 ER5e ExonRegion 0 12.70 38.24 21.95 26.22 45.64 45.51 32.09 14.45 28.49 20.26 16.02 13.92 4.98 11.25 4.86 7.86 10.21 15.29 15.55 33.78 4.12 7.79 7.07 65 IG11_AR6 ActiveIntergenicRegion 0 7.12 34.57 11.94 18.60 32.49 40.42 25.23 11.55 12.72 14.06 7.58 5.47 2.89 8.58 1.32 8.33 2.47 17.00 10.71 20.67 4.94 4.67 7.68 66 IG11_SR5 SilentIntergenicRegion 0 11.59 27.26 19.60 21.26 27.32 40.49 22.97 15.23 20.00 16.85 9.40 1.87 1.69 8.78 2.78 5.60 5.64 27.93 11.02 24.42 5.50 7.58 7.98 67 IG11_AR5 ActiveIntergenicRegion 0 29.17 60.87 47.26 47.03 55.47 45.80 26.51 24.65 32.10 22.05 13.65 11.90 3.62 6.58 12.41 5.44 4.94 11.51 18.45 24.96 5.99 13.72 3.51