Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C2orf43 Gene 0 28.57 48.63 41.81 30.24 51.21 50.74 53.07 24.00 20.60 37.61 60.15 83.13 49.78 70.05 45.65 46.57 60.46 33.18 28.39 46.49 21.35 21.53 17.80 2 412261 Transcript 0 1.89 4.86 2.14 1.55 0.00 0.00 3.20 1.27 0.90 2.16 5.59 6.30 3.41 13.19 4.82 14.93 12.31 3.65 11.52 5.94 0.00 3.49 0.00 3 237822 Transcript 0 17.65 29.91 0.00 0.02 9.58 5.47 20.53 0.00 0.00 0.92 0.00 1.90 2.55 0.80 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 381090 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 419825 Transcript 0 0.60 1.15 2.17 1.49 1.81 0.21 1.34 0.15 0.31 0.48 1.30 1.18 0.65 0.37 0.13 0.50 1.86 0.00 1.26 0.84 0.00 0.01 0.66 6 403006 Transcript 0 0.00 9.47 2.65 1.53 2.12 24.36 11.31 1.11 3.06 3.65 8.69 0.00 6.82 4.43 5.19 15.55 11.45 4.41 0.00 5.82 7.48 2.57 0.00 7 432947 Transcript 0 0.00 2.57 0.00 0.00 3.48 5.62 5.79 0.00 2.78 0.00 2.53 0.00 0.00 2.47 10.38 4.27 8.32 1.66 0.00 3.20 0.00 0.00 0.00 8 402479 Transcript 0 0.00 2.76 7.30 7.89 3.82 0.00 2.25 8.13 6.25 13.46 11.90 0.00 0.00 27.96 19.16 28.37 4.77 21.02 0.00 17.83 0.00 11.82 3.59 9 440866 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 435420 Transcript 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 0.00 4.49 2.49 3.86 3.26 0.00 0.00 0.00 11 470099 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 3.84 12 ER1a ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.87 0.00 0.00 0.00 0.00 5.94 3.30 0.00 0.35 0.00 0.00 1.16 0.00 13 E1_Af KnownBoundary 0 0.00 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.05 0.00 0.00 2.24 0.00 8.20 4.58 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ag KnownBoundary 0 9.85 20.13 1.27 0.00 34.47 50.43 27.38 1.81 6.37 3.52 13.48 0.00 0.00 14.19 5.07 30.08 12.06 16.08 8.47 5.31 18.29 3.00 29.71 15 ER1b ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.87 0.00 0.00 0.00 0.00 5.94 3.30 0.00 3.19 0.00 0.00 2.08 2.94 16 ER1c ExonRegion 0 0.00 2.03 0.00 0.00 1.34 1.53 0.66 0.00 0.62 0.00 3.87 0.00 0.00 0.00 0.00 7.43 3.30 0.00 3.19 0.00 0.73 2.78 4.40 17 ER1d ExonRegion 0 1.41 3.39 0.00 0.00 5.35 3.06 4.41 0.00 1.24 0.00 3.87 0.00 0.00 1.08 0.00 14.86 3.30 1.85 5.31 0.00 2.20 4.17 11.75 18 ER1e ExonRegion 0 5.29 15.25 2.25 0.00 18.51 34.54 21.96 2.16 5.97 4.68 21.26 0.00 0.00 17.19 14.02 30.96 14.58 15.40 10.09 7.62 13.41 4.86 27.90 19 ER1f ExonRegion 1 16.93 35.59 9.19 0.00 28.10 51.35 56.27 5.19 11.73 17.78 71.52 0.00 0.00 29.23 30.46 62.41 52.81 47.12 12.74 34.04 25.34 12.50 42.58 20 ER1g ExonRegion 1 43.94 128.03 26.42 10.96 102.37 200.69 168.22 11.51 24.78 48.61 165.15 0.00 6.19 110.73 61.80 133.39 158.84 103.29 55.87 109.06 76.91 48.00 49.92 21 E1_Da NovelBoundary 0 69.35 6.71 6.98 11.59 35.57 42.65 15.10 1.85 1.33 11.12 13.32 0.00 0.00 12.13 18.17 32.38 13.09 10.53 9.32 8.50 7.91 0.00 0.00 22 E1a_E2a KnownJunction 1 81.05 260.94 44.47 27.70 237.78 340.77 256.06 23.62 39.41 86.87 220.00 0.00 31.33 155.22 103.71 144.15 238.15 164.98 124.14 167.53 122.13 69.56 40.72 23 E1a_E3a KnownJunction 0 0.00 18.94 5.29 1.70 4.24 48.72 22.61 2.22 4.89 7.31 17.37 0.00 13.64 7.24 10.38 31.10 22.91 6.96 0.00 11.63 14.95 5.14 0.00 24 E1a_E5a KnownJunction 0 0.00 2.57 0.00 0.00 3.48 5.62 5.79 0.00 2.78 0.00 2.53 0.00 0.00 2.47 10.38 4.27 8.32 1.66 0.00 3.20 0.00 0.00 0.00 25 ER2a ExonRegion 1 49.39 173.53 31.86 20.44 158.76 258.57 181.38 18.44 37.05 68.05 182.98 2.89 4.69 121.81 78.33 110.96 189.25 141.04 89.19 123.40 88.88 61.81 35.24 26 ER2b ExonRegion 1 14.68 45.93 30.66 27.79 50.45 57.91 45.78 20.64 32.49 60.28 141.46 52.69 32.68 70.94 34.02 64.57 142.56 73.25 41.01 71.77 68.31 27.70 22.88 27 E2_Da NovelBoundary 0 0.00 13.29 13.45 6.46 6.62 0.00 3.89 3.49 5.84 15.34 20.74 17.86 12.99 32.73 5.19 18.80 8.60 7.71 0.00 22.88 19.71 5.20 3.59 28 E2a_E3a KnownJunction 0 0.00 55.65 50.97 51.64 19.69 9.20 21.11 39.55 34.69 77.15 168.57 82.38 49.02 171.29 63.17 105.19 181.58 99.70 102.78 127.71 67.40 55.97 45.93 29 E2a_E5a KnownJunction 0 3.78 7.70 4.29 3.10 0.00 0.00 6.40 2.55 1.79 4.32 7.32 12.60 6.82 26.37 9.64 23.93 21.32 7.30 22.68 11.89 0.00 5.82 0.00 30 E2b_E3a KnownJunction 0 0.00 2.76 7.30 7.89 3.82 0.00 2.25 8.13 6.25 13.46 11.90 0.00 0.00 27.96 19.16 28.37 4.77 21.02 0.00 17.83 0.00 11.82 3.59 31 E2b_E5a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 0.00 4.49 2.49 3.86 3.26 0.00 0.00 0.00 32 ER2c ExonRegion 1 1.18 3.73 10.08 6.28 3.86 0.00 2.21 6.53 6.24 14.02 19.87 13.95 6.77 41.32 11.12 28.24 8.62 17.55 1.77 25.30 12.49 9.95 2.94 33 ER3a ExonRegion 0 15.74 88.33 54.65 48.51 105.58 126.72 98.21 37.31 37.91 70.06 112.00 117.41 90.41 126.50 62.14 98.47 125.94 105.09 62.38 117.01 49.40 34.25 33.42 34 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E3a_E5a KnownJunction 0 25.34 174.77 79.27 64.43 217.32 286.03 243.25 44.98 37.09 88.19 136.14 248.18 115.74 122.73 64.03 142.18 198.97 72.17 55.72 127.26 56.03 25.04 22.45 36 ER4a ExonRegion 0 1.19 2.29 4.34 2.98 3.62 0.41 2.69 0.29 0.62 0.96 0.27 2.36 1.31 0.73 0.27 1.01 3.72 0.00 2.52 1.68 0.00 0.02 1.33 37 ER5a ExonRegion 0 31.38 164.99 80.72 71.18 94.79 115.74 97.72 42.66 48.89 85.31 171.35 280.95 155.81 181.91 84.14 122.08 200.62 96.16 70.60 132.37 76.43 39.31 33.46 38 E5_Da KnownBoundary 0 37.86 107.55 96.36 89.63 93.46 84.55 78.43 56.31 69.39 86.98 163.67 213.97 122.23 146.45 132.89 100.32 202.06 112.75 61.37 146.05 86.86 33.98 18.61 39 ER5b ExonRegion 0 34.66 69.40 76.10 72.72 76.54 74.35 70.03 49.08 58.36 72.09 154.63 207.18 126.83 191.24 89.46 101.67 194.75 107.55 82.22 141.13 86.91 53.87 21.41 40 E5b_E7a KnownJunction 0 30.52 49.33 73.45 63.59 61.63 64.51 80.60 43.21 53.50 68.18 166.20 274.14 90.58 179.71 72.19 102.28 167.37 91.45 89.98 125.92 73.02 58.36 19.29 41 E5b_E8a NovelJunction 0 0.00 20.46 10.47 6.63 0.00 7.95 14.44 2.55 2.84 14.21 2.42 19.81 21.91 7.24 22.99 7.35 3.74 14.14 11.86 18.22 2.53 6.25 4.35 42 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER7a ExonRegion 0 37.36 93.49 64.45 54.62 76.48 90.86 75.67 36.52 45.37 70.23 143.69 248.47 107.08 177.67 75.75 105.82 150.45 71.51 56.74 108.63 59.01 34.70 37.60 44 E7_Da KnownBoundary 0 50.75 83.08 55.20 56.50 106.28 97.56 96.19 43.29 50.93 58.59 169.57 268.89 145.12 216.14 97.78 116.12 175.69 47.42 48.66 157.49 59.06 51.19 33.89 45 ER7b ExonRegion 0 45.07 82.44 45.32 42.96 94.40 79.42 97.13 34.23 34.00 69.72 177.99 196.74 106.41 172.74 85.42 80.00 126.19 49.65 26.01 111.34 38.58 51.78 33.94 46 E7b_E8a KnownJunction 0 22.45 81.70 36.13 39.46 81.83 125.16 124.01 33.76 23.00 66.64 118.14 140.60 129.70 122.90 100.38 94.25 110.52 39.88 34.54 70.44 26.44 22.78 46.27 47 ER7c ExonRegion 0 33.86 86.12 35.90 34.69 77.20 107.09 96.45 32.49 21.80 70.36 132.50 155.64 119.36 130.25 82.98 95.70 102.66 49.33 31.38 73.08 22.81 28.96 40.23 48 I7_AR1 ActiveIntronRegion 1 0.00 0.00 1.23 7.84 0.00 0.00 14.89 0.60 4.51 2.06 0.00 10.39 20.87 0.00 2.90 1.19 0.00 0.00 5.10 3.09 1.98 0.21 2.94 49 ER8a ExonRegion 0 40.54 77.38 49.74 43.04 91.04 121.27 90.54 45.80 29.63 64.11 130.12 194.33 148.28 185.92 87.67 97.62 126.07 65.07 63.71 101.15 40.91 38.22 41.00 50 E8_Db NovelBoundary 0 0.00 3.35 0.00 1.47 0.00 0.00 2.03 2.05 3.30 0.00 2.53 5.70 6.82 7.18 0.00 0.00 3.93 3.86 3.95 2.49 0.00 0.00 12.72 51 E8b_E9a KnownJunction 1 21.49 76.37 68.89 54.37 140.32 153.60 119.64 58.12 42.04 78.33 109.50 318.85 184.89 201.01 127.08 136.46 132.02 63.67 94.50 96.83 15.01 69.99 47.55 52 ER8b ExonRegion 0 33.02 65.89 63.72 55.33 108.10 128.37 101.42 56.00 34.09 75.70 129.12 307.39 172.59 197.82 87.04 134.34 124.11 69.84 87.92 91.91 18.07 67.09 46.40 53 I8 Intron 0 4.45 5.96 4.17 5.70 6.16 4.44 9.14 4.02 4.02 4.41 8.40 20.72 25.05 13.96 4.62 10.70 15.01 13.19 6.79 16.44 7.87 5.02 6.24 54 I8_SR1 SilentIntronRegion 0 3.73 5.45 3.38 5.44 5.75 3.14 8.86 3.52 3.12 3.99 7.71 21.16 26.51 13.38 4.34 9.61 14.42 11.54 5.84 16.46 6.84 4.82 5.88 55 I8_AR1 ActiveIntronRegion 0 4.16 4.27 4.39 5.80 5.04 6.23 9.71 4.57 4.93 5.03 9.27 19.85 9.42 13.53 5.96 11.18 20.05 15.33 12.16 19.71 10.38 3.92 8.80 56 I8_SR2 SilentIntronRegion 0 6.89 8.21 6.69 6.55 7.88 8.11 9.86 5.50 6.66 5.55 10.38 19.61 25.53 16.03 5.10 14.14 15.29 17.84 8.10 15.31 10.37 6.04 6.57 57 I8 Intron 0 20.41 15.24 21.24 19.17 26.59 13.36 16.44 12.47 8.76 15.85 13.28 26.53 28.67 17.77 10.40 21.65 18.72 16.71 12.00 23.25 7.30 11.30 6.56 58 I8_SR1 SilentIntronRegion 0 20.43 15.25 21.25 19.18 26.61 13.37 16.46 12.48 8.77 15.86 13.29 26.55 28.69 17.79 10.41 21.67 18.74 16.72 12.01 23.27 7.30 11.31 6.57 59 E9_Aa NovelBoundary 1 18.74 11.77 21.47 20.01 27.59 24.02 21.37 14.54 11.23 12.49 7.69 30.46 33.28 12.24 4.45 3.67 17.77 16.37 9.51 21.80 14.76 9.25 16.22 60 ER9a ExonRegion 0 55.66 91.38 104.45 67.91 121.73 135.47 126.00 63.83 47.97 93.01 164.38 246.32 155.57 187.60 109.65 143.66 152.17 78.19 88.58 106.53 43.49 72.38 49.49 61 E9_Da KnownBoundary 0 87.50 130.77 125.37 85.24 176.91 188.87 202.71 86.50 69.73 127.14 211.00 341.96 205.99 237.63 170.34 227.46 191.77 116.48 85.65 116.84 67.40 109.42 85.11 62 E9a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER9b ExonRegion 0 30.56 46.98 36.77 23.51 52.03 51.36 59.10 22.00 20.00 36.20 49.62 95.53 48.79 66.27 46.31 41.93 47.37 20.40 22.72 37.28 12.78 20.33 18.19 64 E9_Ab KnownBoundary 0 6.45 16.71 5.09 0.00 12.22 16.13 8.39 1.64 6.51 6.12 14.69 0.00 20.94 2.47 5.81 0.00 12.53 2.28 14.40 11.63 0.00 0.00 0.00 65 ER9c ExonRegion 0 13.24 15.09 15.60 21.91 15.91 21.96 16.18 11.71 10.60 14.33 11.26 13.26 9.08 15.69 7.49 16.83 15.81 12.67 29.77 11.35 5.67 9.28 10.36 66 E9_Db KnownBoundary 0 10.82 2.76 4.91 2.73 15.37 5.17 0.00 4.89 3.27 2.10 7.58 0.00 11.36 0.00 6.30 4.27 4.02 0.00 0.00 2.43 2.41 0.00 0.00 67 E9b_E10a KnownJunction 0 10.30 15.00 33.53 37.66 11.80 4.54 18.90 23.70 12.85 24.74 7.79 26.26 6.82 6.83 10.26 23.58 13.56 11.19 22.78 18.79 5.37 14.02 4.35 68 E9b_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 3.84 69 ER9d ExonRegion 0 4.88 2.51 0.00 0.33 0.86 0.54 0.00 0.00 0.13 0.05 0.00 0.12 0.00 0.21 0.53 0.52 0.40 0.00 0.00 0.00 0.35 0.01 0.00 70 E9_Dc KnownBoundary 1 43.79 21.44 13.42 1.80 0.00 7.72 1.81 0.00 5.06 5.88 0.00 22.36 45.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 71 ER9e ExonRegion 0 17.65 29.91 0.00 0.02 9.58 5.47 20.53 0.00 0.00 0.92 0.00 1.90 2.55 0.80 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 E9_Dd NovelBoundary 1 60.08 106.95 21.20 37.72 60.70 61.67 90.31 25.47 21.67 24.93 18.53 77.28 45.94 56.33 48.21 27.77 27.12 22.30 26.45 47.62 19.83 17.02 12.98 73 I9 Intron 0 16.11 31.73 20.15 14.69 40.74 19.54 32.25 16.65 11.91 18.21 21.33 59.80 23.84 44.58 31.50 19.23 28.90 16.44 9.70 22.67 3.35 18.24 7.82 74 I9_AR1 ActiveIntronRegion 0 16.83 33.11 21.00 15.18 42.27 20.11 33.65 17.34 12.42 18.96 22.20 62.00 24.95 46.35 32.87 20.02 30.07 17.19 10.15 23.65 3.43 19.01 8.19 75 E10_Aa NovelBoundary 0 38.90 63.02 53.07 54.97 52.97 54.00 64.35 32.65 19.27 37.47 44.75 43.21 19.80 58.27 59.34 45.63 39.08 22.63 14.40 33.17 12.29 14.33 12.46 76 ER10a ExonRegion 0 31.79 53.58 55.87 47.17 68.97 31.10 68.90 31.22 17.95 39.51 45.52 64.94 42.59 63.77 39.85 48.52 47.69 32.20 23.40 54.62 11.33 22.54 21.10 77 E10_Ab KnownBoundary 0 74.31 85.97 93.37 65.96 136.93 59.91 101.44 42.51 30.12 57.14 66.65 68.42 74.02 105.13 38.69 69.81 59.84 51.98 17.22 75.04 17.48 25.47 21.94 78 ER10b ExonRegion 0 61.57 61.68 83.41 54.58 68.98 53.30 64.89 42.05 22.01 55.67 55.61 54.22 51.49 80.75 69.84 49.29 49.54 52.65 35.69 46.69 26.54 22.27 18.65 79 E10_Da KnownBoundary 1 81.27 82.35 71.67 62.10 82.17 103.01 100.25 32.65 22.83 56.79 43.43 6.30 79.70 61.57 76.27 22.99 68.07 27.40 32.94 41.55 8.15 24.80 3.84 80 ER10c ExonRegion 0 32.10 38.42 61.87 43.93 52.96 27.38 44.62 31.46 23.73 27.40 34.38 51.28 35.89 41.25 61.18 23.27 42.38 11.87 18.32 41.39 7.34 23.68 10.80 81 ER10d ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 82 IG49 Intergenic 0 6.66 8.39 8.97 9.61 16.09 13.85 9.85 11.70 10.18 9.22 8.29 8.77 8.74 7.44 5.17 9.81 7.79 10.79 7.44 9.32 2.35 2.70 4.55 83 IG49_SR5 SilentIntergenicRegion 0 8.45 5.99 4.65 6.26 11.63 16.71 9.11 3.46 5.71 3.72 7.54 9.50 8.94 8.35 4.97 8.88 4.64 4.38 6.20 6.00 2.21 1.66 5.20 84 IG49_AR6 ActiveIntergenicRegion 0 14.82 4.07 6.13 8.40 20.07 18.19 15.89 6.91 9.37 3.54 10.63 2.53 3.52 20.03 9.19 14.86 6.60 11.86 3.19 16.67 3.86 4.34 0.00 85 IG49_AR5 ActiveIntergenicRegion 0 10.24 8.69 11.23 5.77 17.82 15.51 10.80 9.70 9.31 7.99 7.46 3.39 8.19 11.50 8.53 16.29 5.78 13.89 7.24 14.64 2.91 2.75 4.87 86 IG49_SR4 SilentIntergenicRegion 0 6.74 5.65 8.39 5.99 16.81 10.58 11.86 10.54 10.75 6.46 10.97 8.54 14.81 7.64 6.87 13.50 10.44 17.11 4.61 8.66 5.01 1.85 6.40 87 IG49_AR4 ActiveIntergenicRegion 0 5.77 9.15 12.76 10.16 24.32 14.34 6.56 15.79 14.99 16.84 16.08 6.30 23.88 14.76 24.00 28.91 3.30 34.27 7.96 16.73 1.70 3.22 11.21 88 IG49_AR3 ActiveIntergenicRegion 0 3.88 5.80 6.57 9.72 8.90 12.46 8.79 10.87 11.60 9.20 9.33 9.34 17.34 9.41 6.82 9.20 7.45 12.04 8.66 6.61 2.61 2.96 6.19 89 IG49_AR2 ActiveIntergenicRegion 0 3.35 7.65 5.68 12.38 18.79 12.75 10.65 14.35 9.00 9.64 9.03 9.92 7.89 4.86 2.47 6.10 9.41 8.46 5.33 9.15 0.27 2.28 3.83 90 IG49_SR2 SilentIntergenicRegion 0 8.31 11.88 13.46 13.38 19.87 16.54 9.04 11.83 14.98 12.94 9.93 10.82 6.25 6.91 4.24 7.69 7.21 8.85 8.62 8.50 1.73 3.98 5.27 91 IG49_AR1 ActiveIntergenicRegion 0 3.17 12.54 15.52 18.17 22.30 9.17 4.85 12.10 7.62 16.06 8.70 2.16 4.69 4.33 2.90 8.92 9.90 9.85 8.49 4.26 2.20 4.17 2.94 92 IG49_SR1 SilentIntergenicRegion 0 15.99 18.13 14.89 11.89 22.72 12.88 10.72 16.78 9.41 8.79 5.99 14.17 3.81 3.76 5.30 7.11 11.05 6.61 9.31 6.50 2.52 3.73 4.38