Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HADHA Gene 0 331.14 519.68 774.56 540.62 358.19 486.53 309.30 281.80 254.20 309.94 723.88 410.45 376.75 907.26 758.54 724.13 783.60 470.88 556.08 326.88 546.06 332.62 292.86 2 380649 Transcript 0 441.37 722.31 1012.31 755.02 526.44 698.19 454.97 382.13 387.88 439.84 1008.52 736.42 571.38 1328.42 953.12 1067.48 1150.19 653.17 823.33 491.82 731.46 531.57 435.05 3 457468 Transcript 0 0.00 2.70 6.71 16.65 0.00 4.71 2.25 7.23 2.92 4.30 9.90 0.00 0.00 0.00 5.56 0.00 15.43 8.66 45.37 14.70 2.59 0.00 0.00 4 461025 Transcript 0 3.03 3.96 0.89 0.73 0.96 3.33 0.49 0.61 1.40 0.41 6.89 2.49 2.30 1.94 9.89 1.06 1.18 1.31 1.14 2.81 0.02 1.24 2.80 5 471743 Transcript 1 37.44 49.20 21.84 33.71 29.86 21.34 36.27 30.22 22.62 18.00 15.78 23.21 31.68 37.10 14.58 28.76 18.38 26.02 17.27 24.91 20.13 16.95 17.83 6 492433 Transcript 0 18.30 17.40 52.26 27.16 23.84 42.82 25.70 40.80 16.59 37.01 19.26 9.20 10.66 31.21 42.46 22.26 49.40 57.47 19.40 34.57 25.89 18.18 14.92 7 ER1a ExonRegion 0 16.05 10.34 3.38 0.90 22.34 35.48 21.74 5.27 3.65 4.94 22.83 0.81 0.76 40.76 24.97 39.91 36.45 8.13 6.23 9.27 21.70 15.81 20.36 8 E1_Ab KnownBoundary 0 88.53 81.17 21.17 5.29 139.39 261.89 141.63 23.00 22.60 25.55 130.66 12.75 12.66 271.71 100.38 193.80 114.35 41.74 41.13 59.57 113.86 112.30 101.75 9 ER1b ExonRegion 1 401.69 809.85 242.91 257.74 757.30 1658.42 769.72 207.24 177.55 222.83 717.37 46.76 90.46 1034.65 417.53 1097.09 919.75 389.04 686.09 382.90 589.41 410.79 496.15 10 E1a_E2a KnownJunction 0 144.77 342.50 361.05 373.25 406.45 722.48 311.97 234.70 225.84 291.45 228.16 138.04 149.67 208.19 199.15 407.41 298.64 322.51 315.11 160.69 153.39 86.40 239.53 11 ER2a ExonRegion 0 95.50 194.06 255.37 205.47 226.42 402.26 172.40 157.12 156.01 180.42 269.87 165.24 186.15 169.10 136.29 286.03 304.55 244.30 205.15 127.20 216.23 77.93 167.39 12 E2a_E3a KnownJunction 1 71.42 125.04 195.91 96.29 92.95 97.50 126.44 113.24 112.88 109.22 350.98 145.70 202.10 182.94 131.90 144.41 369.61 135.01 69.55 124.70 325.13 88.42 90.14 13 ER3a ExonRegion 1 25.79 82.98 331.66 279.97 44.36 57.55 54.02 223.68 207.41 257.10 1047.93 152.87 154.97 754.96 322.16 393.58 1107.15 192.11 311.45 375.76 699.38 241.31 176.20 14 E3a_E4a KnownJunction 0 45.05 143.92 569.85 603.95 125.72 116.52 85.76 376.61 325.46 439.41 1096.44 420.14 332.77 2049.75 893.14 1165.34 1167.74 420.67 918.61 674.52 567.49 756.66 452.77 15 E3a_E6a KnownJunction 0 0.00 2.70 6.71 16.65 0.00 4.71 2.25 7.23 2.92 4.30 9.90 0.00 0.00 0.00 5.56 0.00 15.43 8.66 45.37 14.70 2.59 0.00 0.00 16 ER4a ExonRegion 0 98.58 273.67 536.84 482.41 383.17 525.66 251.38 310.58 327.36 340.96 912.00 570.07 561.33 1147.46 593.54 1085.36 944.15 641.72 763.06 453.86 607.30 473.29 469.95 17 E4a_E6a KnownJunction 0 128.17 504.84 632.38 532.33 953.91 1839.34 1005.36 302.22 357.46 382.51 1027.37 706.73 521.23 1027.91 552.08 649.91 1195.98 511.78 557.00 422.43 763.51 325.03 212.72 18 ER5a ExonRegion 0 6.05 4.57 1.78 1.45 1.91 1.20 0.98 1.23 1.21 0.81 3.36 4.98 4.60 3.87 9.03 2.12 2.36 2.62 2.28 5.62 0.03 2.48 5.60 19 E5_Da NovelBoundary 1 865.12 908.79 364.77 420.79 780.22 469.56 782.96 358.04 406.85 279.79 271.33 432.29 371.89 207.72 281.85 970.17 641.70 656.99 787.98 782.03 431.70 316.76 744.37 20 E5a_E6a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 5.45 0.00 0.00 1.59 0.00 10.42 0.00 0.00 0.00 10.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER6a ExonRegion 0 260.97 908.79 613.01 489.48 547.14 1119.73 657.41 274.40 302.62 358.62 1042.29 899.16 750.74 1191.66 618.20 733.39 1151.75 519.32 585.24 444.24 812.99 467.25 284.69 22 E6a_E7a KnownJunction 0 501.27 635.61 884.48 696.71 457.22 421.35 282.02 292.61 306.68 395.09 913.13 1002.78 1119.08 1624.00 1037.15 979.49 1153.06 642.53 768.59 532.94 743.92 645.34 361.68 23 ER7a ExonRegion 0 315.28 628.30 755.46 615.36 356.22 409.97 303.09 319.87 310.60 397.99 1070.06 907.80 885.75 1646.23 866.36 1062.80 1146.55 692.76 695.27 518.08 878.49 489.97 374.01 24 E7_Da KnownBoundary 1 323.98 635.94 782.73 667.25 312.73 339.18 271.56 377.43 329.28 407.63 931.34 743.94 448.67 1680.80 715.00 946.85 969.14 690.28 473.71 510.25 850.74 370.89 332.75 25 ER7b ExonRegion 1 223.70 592.40 737.47 575.92 246.74 305.33 254.70 321.86 312.31 408.38 905.56 862.29 362.25 1425.51 631.09 902.89 1009.21 712.35 510.11 492.30 873.35 380.04 333.31 26 E7b_E8a KnownJunction 1 262.49 772.23 856.27 616.80 240.49 360.02 323.36 323.42 339.00 439.33 886.65 839.52 347.70 1325.22 672.48 999.57 1085.74 778.00 593.15 559.08 917.21 473.52 349.48 27 ER8a ExonRegion 0 280.92 796.83 735.02 598.68 426.98 562.51 412.73 291.66 295.58 399.65 908.74 655.81 820.30 1392.08 744.44 992.86 1061.19 686.57 661.26 443.71 765.84 453.50 409.48 28 E8a_E9a KnownJunction 0 447.56 1330.09 784.12 729.68 670.88 833.67 735.49 369.75 332.35 413.38 883.80 603.20 1111.45 1717.06 968.91 966.67 1128.19 552.99 670.33 566.50 771.54 477.74 434.75 29 ER9a ExonRegion 0 308.65 1158.70 716.30 639.34 556.52 642.76 568.08 323.41 310.04 405.81 1031.45 451.67 705.26 1362.32 808.37 899.87 1112.72 433.09 598.43 466.93 627.92 449.19 334.49 30 E9_Ab KnownBoundary 0 466.75 1363.64 845.83 734.24 627.59 815.10 702.98 353.07 363.71 487.54 1035.00 534.62 667.49 1201.43 747.64 792.44 986.07 418.31 591.64 424.47 520.72 474.01 368.17 31 ER9b ExonRegion 0 427.91 1100.83 828.32 696.33 671.55 681.07 614.38 357.96 370.97 441.47 1078.32 580.91 598.45 1306.77 650.61 993.88 1081.04 472.24 659.69 468.99 534.67 494.68 405.40 32 E9a_E10a KnownJunction 0 650.12 1281.75 982.82 762.41 779.88 665.24 668.23 388.03 394.30 446.93 1053.06 552.48 514.25 1382.78 677.05 1149.70 1150.72 466.93 758.89 562.41 643.23 551.53 475.13 33 ER10a ExonRegion 0 431.08 962.24 957.50 831.98 590.58 666.15 512.81 382.60 382.50 487.58 1277.95 887.14 680.72 1373.70 722.58 1088.40 1255.78 510.79 823.14 495.53 576.82 588.87 433.51 34 E10a_E11a KnownJunction 0 449.41 1183.80 1015.04 869.72 781.32 848.03 666.55 436.41 436.05 513.17 1156.98 1089.96 964.06 1292.20 871.63 1163.11 1200.28 522.73 795.41 546.24 595.84 574.86 486.57 35 ER11a ExonRegion 0 355.24 960.60 887.60 752.53 647.16 742.62 518.95 374.16 392.48 455.26 1039.02 858.98 786.77 1411.33 814.79 1118.61 1129.37 558.64 861.11 458.04 581.01 523.66 425.61 36 E11_Da KnownBoundary 0 34.60 48.68 10.50 57.40 56.20 18.85 56.48 37.50 26.10 27.43 12.37 37.36 6.82 32.84 30.04 31.10 22.91 3.52 8.56 33.75 0.00 27.37 18.69 37 E11a_E12a KnownJunction 0 390.44 1066.65 907.39 725.65 658.74 724.01 522.18 330.77 357.40 435.89 967.14 776.65 607.10 1524.29 779.28 1087.58 1119.31 499.60 1012.83 371.23 576.69 529.98 394.12 38 ER11b ExonRegion 0 24.82 35.16 16.00 52.42 54.60 26.79 74.33 36.40 29.55 28.77 17.17 43.55 37.79 36.20 9.67 30.93 19.76 15.10 10.89 22.97 4.12 23.67 14.60 39 E11_Db KnownBoundary 0 35.04 43.81 35.07 59.93 48.30 35.04 113.72 43.95 29.46 38.49 16.85 42.16 67.53 43.50 5.69 61.01 20.66 34.57 13.84 26.65 8.71 23.76 24.76 40 ER11c ExonRegion 0 37.44 49.20 21.84 33.71 29.86 21.34 36.27 30.22 22.62 18.00 15.78 23.21 31.68 37.10 14.58 28.76 18.38 26.02 17.27 24.91 20.13 16.95 17.83 41 ER12a ExonRegion 0 393.08 1052.25 875.00 647.33 627.54 679.77 551.53 356.33 371.17 449.51 1230.38 921.35 623.05 1416.54 793.52 1091.18 1294.94 626.91 848.23 499.11 754.71 561.62 416.63 42 E12a_E13a KnownJunction 1 516.24 1121.97 971.20 722.52 578.18 773.08 587.32 383.47 465.16 444.22 1193.20 1344.59 522.53 1645.37 819.83 1231.98 1448.53 718.76 908.64 553.14 805.95 702.72 424.68 43 ER13a ExonRegion 0 497.66 1003.71 929.95 674.73 597.17 755.70 481.34 345.73 411.96 461.29 1122.07 748.32 482.14 1448.93 841.64 1116.79 1235.93 816.99 912.64 470.90 828.95 536.13 446.17 44 E13a_E14a KnownJunction 0 904.83 1216.23 1105.73 878.84 896.86 974.78 745.86 381.78 500.83 487.92 1172.56 681.52 765.70 1575.14 953.83 1362.89 1379.62 813.48 1027.70 585.74 908.00 624.83 634.08 45 ER14a ExonRegion 0 547.21 810.81 1155.13 910.19 618.10 757.00 514.94 437.85 475.08 524.75 1235.56 956.11 776.85 1481.75 1014.93 1284.22 1314.41 845.38 997.93 591.78 872.25 647.21 534.26 46 E14a_E15a KnownJunction 0 596.33 710.27 1492.05 968.34 446.86 664.28 433.15 539.34 557.37 595.91 1017.42 930.75 762.61 1428.93 1162.25 1170.21 1493.22 605.63 757.57 603.83 784.39 554.35 539.67 47 ER15a ExonRegion 0 540.42 749.18 1218.88 909.98 497.93 732.57 455.40 461.08 471.94 534.98 1147.16 1063.16 762.91 1443.00 1120.78 1348.49 1236.58 743.41 922.18 554.36 904.99 607.60 525.42 48 E15a_E16a KnownJunction 0 892.01 1079.68 1458.02 1247.19 715.45 927.53 575.31 550.39 523.37 587.47 1316.12 1110.51 1032.24 1526.70 1646.71 1650.17 1437.40 1085.33 1164.93 784.46 1104.09 923.58 679.92 49 I15 Intron 0 20.04 35.96 64.74 44.71 61.29 59.59 54.99 63.24 17.20 40.71 9.39 12.98 14.56 12.34 8.04 13.61 13.31 20.63 14.98 24.04 4.85 11.13 9.33 50 I15_AR2 ActiveIntronRegion 0 26.78 42.57 93.11 54.48 87.48 91.34 81.96 85.27 21.64 55.44 9.43 14.10 16.61 14.78 9.45 18.65 12.73 27.43 21.45 39.12 5.19 16.79 13.45 51 E16_Aa NovelBoundary 0 62.09 42.36 155.17 59.60 83.02 114.59 76.62 122.81 30.79 81.12 14.74 11.70 8.28 26.43 24.72 20.59 14.21 35.90 48.66 68.39 14.27 23.76 8.71 52 ER16a ExonRegion 0 546.49 877.01 1505.33 1075.74 638.54 794.32 489.10 535.93 439.26 543.08 1238.29 969.19 643.34 1506.35 1292.46 1230.46 1490.15 975.12 911.41 586.63 1035.02 593.31 534.15 53 E16_Ab KnownBoundary 0 659.52 1011.20 1666.35 1062.70 665.96 889.60 607.94 569.04 423.75 577.21 1290.85 851.83 431.14 1457.89 1296.25 1172.68 1351.10 873.46 772.16 601.01 1031.31 428.02 607.61 54 ER16b ExonRegion 0 562.39 827.67 1342.48 846.14 537.72 811.59 568.07 451.60 396.22 491.01 1239.99 660.95 419.85 1493.39 1263.33 1166.69 1247.48 787.45 861.87 503.98 1035.92 415.00 475.96 55 E16a_E17a KnownJunction 0 731.09 910.30 1415.80 901.52 702.72 777.96 675.07 399.36 369.15 444.16 1171.98 514.82 449.81 1560.19 1233.58 1300.43 1435.53 777.38 969.82 454.32 914.98 440.21 418.11 56 I16 Intron 0 14.77 43.27 74.83 46.42 67.18 88.36 60.07 74.82 19.89 50.61 4.14 3.30 2.89 6.43 5.73 7.03 7.06 38.38 16.86 27.07 2.48 11.26 7.93 57 I16_AR1 ActiveIntronRegion 0 14.83 43.46 75.17 46.62 67.46 88.74 60.33 75.14 19.98 50.83 4.16 3.31 2.90 6.46 5.75 7.06 7.09 38.55 16.93 27.18 2.49 11.30 7.97 58 ER17a ExonRegion 0 599.89 773.29 1282.68 863.65 629.03 717.71 479.24 425.68 344.83 412.74 1082.82 443.11 300.50 1388.32 1208.01 1057.69 1199.04 794.77 780.74 455.07 941.53 401.09 422.37 59 E17a_E18a KnownJunction 0 974.84 966.21 1359.77 1002.24 850.42 756.10 464.50 429.43 390.65 424.47 1058.85 466.95 259.56 1514.46 1466.84 1096.46 1145.39 844.53 841.91 501.24 843.57 512.89 454.81 60 I17 Intron 0 15.58 31.88 47.68 32.36 45.54 62.78 44.99 58.02 19.43 51.18 8.79 5.30 4.17 13.30 9.35 11.41 9.93 34.92 17.33 34.04 4.37 7.87 6.76 61 I17_AR1 ActiveIntronRegion 0 15.61 31.96 47.80 32.44 45.66 62.94 45.10 58.17 19.48 51.31 8.81 5.32 4.18 13.33 9.37 11.44 9.96 35.01 17.37 34.12 4.38 7.88 6.78 62 ER18a ExonRegion 0 616.26 724.70 1306.36 793.98 505.87 720.56 464.97 450.14 361.81 442.56 980.17 281.92 286.55 1352.04 1363.90 972.52 1036.43 661.69 802.79 450.16 827.81 421.89 415.19 63 E18a_E19a KnownJunction 0 597.74 889.05 1548.94 997.81 573.26 870.58 613.64 498.93 383.47 465.44 996.57 300.55 345.92 1531.35 1659.32 965.13 1060.12 787.49 843.32 533.45 817.31 511.18 502.87 64 I18_SR1 SilentIntronRegion 0 8.16 47.35 23.28 19.28 32.87 53.44 31.21 67.16 10.94 34.73 13.25 10.51 8.04 15.08 5.80 7.64 6.60 36.69 29.12 16.41 2.20 11.01 24.75 65 I18_AR2 ActiveIntronRegion 0 8.47 45.03 22.93 22.78 29.82 58.42 28.94 65.43 12.53 37.85 11.60 12.99 4.69 17.63 4.56 11.89 7.54 34.58 28.67 23.40 2.83 9.82 23.49 66 ER19a ExonRegion 0 767.08 863.32 1599.74 984.92 735.46 983.12 535.57 498.20 401.93 501.45 1183.79 355.17 474.79 1482.24 1635.80 1235.89 1185.71 836.50 932.09 527.07 884.63 472.65 499.77 67 E19a_E20a KnownJunction 0 839.70 890.96 1693.17 954.92 567.57 831.11 448.25 489.52 427.34 460.68 1024.63 489.46 756.93 1383.90 1631.25 1518.49 1078.26 834.54 926.99 543.10 815.03 466.72 481.36 68 ER20a ExonRegion 0 698.51 690.30 1654.19 995.65 392.27 623.17 372.22 508.20 382.72 477.31 988.33 449.61 526.09 1316.83 1615.86 1150.74 1074.06 832.80 896.33 487.36 876.32 501.64 454.19 69 E20_Da KnownBoundary 0 13.19 2.50 43.88 21.08 7.56 55.03 31.53 27.97 10.59 28.80 6.37 0.00 0.00 18.60 13.35 7.09 23.94 47.75 4.14 41.74 27.00 13.66 0.00 70 E20a_E20b KnownJunction 0 597.44 597.13 1830.39 1077.82 399.92 547.30 376.88 498.97 390.74 505.97 861.53 377.07 492.50 1311.97 1731.38 980.43 969.61 715.82 923.79 461.87 695.98 391.77 446.11 71 ER20b ExonRegion 0 18.30 17.40 52.26 27.16 23.84 42.82 25.70 40.80 16.59 37.01 19.26 9.20 10.66 31.21 42.46 22.26 49.40 57.47 19.40 34.57 25.89 18.18 14.92 72 E20_Ab KnownBoundary 0 12.89 6.18 26.26 18.51 49.41 54.91 37.54 51.26 15.28 26.11 9.32 0.00 0.00 17.25 44.50 3.25 24.59 40.09 11.77 29.15 14.46 19.53 19.04 73 ER20c ExonRegion 0 784.73 642.75 1713.91 1003.83 522.93 757.02 340.41 525.28 393.90 523.05 935.72 476.02 694.59 1422.62 1724.36 1204.55 1092.60 849.32 863.71 428.76 848.61 441.74 438.59 74 E20_Db KnownBoundary 0 1898.19 1062.31 1983.43 1259.28 1042.95 1086.82 447.28 641.17 451.15 568.35 1108.97 459.90 598.66 1601.40 2357.14 1891.47 1404.86 1042.18 1458.49 484.11 1055.78 815.20 736.94 75 ER20d ExonRegion 0 351.97 339.23 1005.51 622.45 262.54 323.67 182.31 297.77 227.83 298.56 576.34 205.74 255.02 679.81 1029.63 584.77 639.00 422.04 540.48 245.98 472.36 261.28 229.87 76 IG40 Intergenic 0 1.62 4.22 10.07 7.55 10.66 22.63 19.00 17.85 8.53 15.27 2.11 0.19 0.42 1.64 1.30 0.16 0.36 22.60 12.34 15.80 2.04 3.75 6.90 77 IG40_AR3 ActiveIntergenicRegion 0 0.42 1.16 6.37 10.84 14.97 21.44 22.00 16.24 9.38 15.34 0.47 0.00 0.00 0.61 2.30 0.00 0.00 17.14 12.29 14.78 0.05 4.60 3.97 78 IG40_SR1 SilentIntergenicRegion 0 2.10 4.90 11.84 7.17 11.65 25.46 20.55 17.94 8.64 14.82 2.65 0.26 0.57 1.85 1.46 0.15 0.49 24.52 13.66 17.46 1.88 3.14 7.78 79 IG40_AR2 ActiveIntergenicRegion 0 0.26 3.58 5.28 8.77 4.28 14.44 14.96 24.13 9.75 18.68 1.02 0.00 0.00 0.70 0.00 0.46 0.00 20.44 6.24 10.66 5.29 5.80 5.87