Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARFGAP3 Gene 0 115.30 83.04 75.25 105.88 109.43 137.04 97.73 100.58 99.17 88.70 158.55 356.79 276.28 173.56 155.81 144.76 115.59 54.16 56.73 57.99 125.43 289.44 198.67 2 452960 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 456251 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 4 453941 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 440262 Transcript 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 5.09 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 435208 Transcript 0 0.95 0.23 0.81 0.21 2.39 2.66 0.59 1.72 2.22 0.19 0.00 0.00 2.59 0.72 3.79 2.32 1.12 0.60 1.38 0.71 0.98 0.92 0.99 7 437119 Transcript 0 0.00 6.71 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 4.58 0.00 0.00 0.00 0.00 5.20 0.00 8 263245 Transcript 0 1.94 0.00 0.71 2.33 0.78 0.00 5.30 0.00 1.96 0.00 0.00 2.53 4.69 0.00 0.00 0.00 0.00 1.62 3.72 1.24 0.00 6.60 6.97 9 493606 Transcript 0 1.84 3.71 2.51 4.99 7.33 1.98 2.53 5.49 7.70 2.27 0.35 3.99 3.03 0.73 5.13 2.29 2.86 1.79 2.46 3.43 3.79 4.76 8.75 10 454099 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 412382 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 429508 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 453516 Transcript 0 3.98 7.06 3.10 5.93 5.35 4.53 3.27 3.66 7.12 5.46 15.12 25.21 15.45 15.95 8.53 11.01 11.26 8.04 4.50 4.88 15.94 13.24 21.77 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.58 0.00 0.00 1.56 0.00 0.00 0.08 0.00 0.14 0.31 0.00 0.00 1.22 3.88 0.00 0.00 15 ER2a ExonRegion 0 1.89 0.45 1.62 0.42 4.79 5.32 1.18 3.44 3.32 0.38 0.01 0.00 5.18 1.44 7.58 4.64 2.24 1.21 2.75 1.43 1.95 1.85 1.97 16 E2_Da NovelBoundary 0 398.89 313.43 628.33 590.97 327.93 301.13 463.31 595.08 561.51 501.41 95.60 229.87 270.11 170.52 144.63 373.75 268.07 743.22 355.87 494.02 264.22 178.74 345.81 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.00 0.95 0.00 1.03 0.00 1.48 0.00 1.21 0.00 0.00 0.00 0.00 0.00 1.16 0.03 0.95 0.09 0.00 0.73 1.00 2.06 0.17 3.96 19 E3_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 4.10 0.00 4.60 4.80 0.00 0.00 0.00 16.73 20 E3_Ac KnownBoundary 0 6.67 0.00 0.00 2.06 3.65 10.28 4.24 0.00 1.24 0.00 2.68 0.00 0.00 2.47 4.45 0.00 9.26 5.97 0.00 0.00 8.71 5.39 4.10 21 ER3b ExonRegion 0 1.22 0.00 0.00 1.52 0.00 5.50 1.37 2.19 0.33 1.37 1.56 0.00 0.00 1.37 2.90 1.83 3.30 0.00 3.19 0.00 1.78 3.05 10.62 22 E3_Ad KnownBoundary 0 18.08 2.96 13.96 16.55 0.00 25.33 9.98 16.76 11.26 21.25 9.53 0.00 0.00 17.13 31.65 13.84 28.33 3.36 3.86 43.40 26.44 33.49 29.36 23 ER3c ExonRegion 0 11.82 2.66 6.17 12.12 2.40 17.52 8.67 9.95 6.35 12.62 6.67 4.03 1.29 14.79 21.11 8.81 17.64 1.72 1.21 22.30 15.05 16.02 19.04 24 ER3d ExonRegion 0 51.74 31.43 14.28 23.50 28.08 101.26 38.99 22.37 35.48 33.88 58.64 54.62 22.55 85.88 50.25 91.97 79.01 46.13 32.03 31.81 107.21 133.58 144.93 25 E3a_E4a KnownJunction 0 6.22 10.79 17.33 25.44 4.07 13.34 16.34 28.14 27.20 21.09 69.18 70.97 44.15 53.86 22.99 29.31 56.38 34.70 12.14 12.27 175.76 54.50 26.38 26 ER4a ExonRegion 0 9.07 15.64 41.88 56.90 21.02 40.36 15.50 56.25 83.05 62.66 161.26 120.42 83.99 174.61 97.42 174.31 166.21 81.56 58.30 68.00 183.67 237.33 240.14 27 E4_Da KnownBoundary 0 3.19 0.00 4.70 14.28 8.66 0.00 2.25 2.22 7.58 2.71 0.00 12.60 13.64 0.00 4.45 7.69 4.11 3.90 14.40 2.49 3.15 13.90 7.85 28 E4a_E5a KnownJunction 0 10.67 32.69 39.83 101.02 51.19 49.74 29.06 51.34 98.61 68.63 130.30 216.82 140.90 173.00 94.81 324.10 133.43 125.27 103.34 99.65 151.97 326.93 407.18 29 ER4b ExonRegion 0 1.84 3.71 2.51 4.99 7.33 1.98 2.53 5.49 7.70 2.27 0.35 3.99 3.03 0.73 5.13 2.29 2.86 1.79 2.46 3.43 3.79 4.76 8.75 30 E4_Db NovelBoundary 0 27.41 24.80 19.96 12.02 16.30 10.96 12.67 19.67 19.47 14.64 12.37 7.05 8.28 0.00 15.82 31.87 21.79 12.68 36.52 31.00 23.48 20.45 15.79 31 ER5a ExonRegion 1 9.68 31.40 44.87 80.63 82.95 119.10 64.28 74.23 117.52 75.13 199.72 258.52 92.45 189.91 112.83 247.99 166.36 144.86 88.27 77.82 208.87 439.88 409.80 32 E5_Da NovelBoundary 0 3.33 0.00 6.83 8.92 0.00 6.93 3.93 6.65 3.65 0.00 2.63 6.60 6.82 2.47 19.66 11.36 3.83 16.42 9.32 0.00 3.15 7.53 31.84 33 E5a_E6a KnownJunction 1 15.78 32.30 54.49 55.00 112.56 188.02 124.23 80.30 110.33 87.54 232.95 343.31 67.20 248.28 144.76 155.17 161.20 121.33 47.44 59.25 235.62 240.22 269.75 34 E5a_E7a KnownJunction 0 0.00 6.71 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 4.58 0.00 0.00 0.00 0.00 5.20 0.00 35 E5a_E8b KnownJunction 0 0.00 0.00 0.00 3.50 0.00 2.90 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 36 ER6a ExonRegion 0 32.58 53.27 55.29 80.93 84.10 208.08 94.61 74.52 102.97 100.32 253.59 253.67 168.90 236.28 124.14 208.20 189.58 114.54 77.27 93.91 253.21 252.54 269.63 37 E6_Da KnownBoundary 1 71.27 70.12 72.74 98.79 80.48 171.44 67.97 105.77 125.61 111.34 201.68 268.14 276.77 294.78 93.95 219.00 168.77 92.65 82.26 98.24 252.42 229.44 354.09 38 ER6b ExonRegion 1 86.36 88.40 69.15 88.13 56.30 108.09 63.76 93.88 113.00 108.30 220.81 291.09 207.10 253.78 107.29 287.25 206.73 114.16 94.00 92.74 304.37 380.47 330.29 39 E6b_E7a KnownJunction 0 151.73 121.62 83.68 96.72 71.82 70.58 79.10 89.71 105.93 120.29 272.28 334.46 237.32 220.44 129.67 365.37 172.70 156.20 119.44 95.56 304.81 739.52 526.26 40 E6b_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.24 0.00 0.00 0.00 0.00 41 ER7a ExonRegion 0 78.03 91.34 63.57 75.96 59.60 83.66 57.09 87.12 112.59 89.19 267.04 333.27 214.90 267.24 138.60 242.09 183.32 127.21 77.97 76.57 245.74 403.61 417.88 42 E7a_E8b KnownJunction 0 102.61 130.90 55.32 83.51 111.71 67.97 48.36 72.50 108.97 95.15 264.33 379.02 278.88 292.96 146.61 182.35 166.15 130.16 87.63 88.97 217.33 235.99 313.97 43 ER8a ExonRegion 0 3.98 7.06 3.10 5.93 5.35 4.53 3.27 3.66 7.12 5.46 15.12 25.21 15.45 15.95 8.53 11.01 11.26 8.04 4.50 4.88 15.94 13.24 21.77 44 ER8b ExonRegion 0 81.25 132.79 63.96 83.93 97.43 133.55 92.91 73.31 97.02 87.06 225.73 282.81 304.74 246.42 142.36 252.77 196.46 108.91 71.54 65.52 224.53 235.80 262.00 45 E8a_E9a KnownJunction 0 104.61 177.86 64.04 111.34 108.23 218.91 149.27 86.91 98.49 77.60 177.99 390.58 459.55 185.59 139.93 172.43 146.70 80.83 45.37 75.61 131.40 271.20 198.47 46 I8_SR2 SilentIntronRegion 0 12.27 5.73 7.50 11.20 14.91 11.36 14.23 6.96 10.98 1.73 7.94 23.58 37.78 22.73 12.56 22.59 11.89 9.10 11.48 3.83 8.81 22.99 40.67 47 I8_AR4 ActiveIntronRegion 0 23.25 14.51 14.57 19.72 21.44 18.65 18.85 11.41 22.35 5.36 5.79 53.50 46.54 12.83 15.63 10.17 7.07 4.10 3.65 6.69 3.13 36.72 14.72 48 E9_Aa NovelBoundary 0 116.09 14.80 26.20 28.33 40.83 15.62 26.45 19.26 30.90 4.32 10.48 61.82 69.15 18.95 26.70 6.92 12.90 8.42 0.00 11.82 5.44 46.17 18.18 49 ER9a ExonRegion 0 97.71 147.98 67.64 119.53 172.54 193.86 147.42 108.78 109.27 93.47 203.79 478.62 495.89 263.95 146.51 223.95 150.36 86.63 68.96 65.07 142.76 346.80 297.58 50 E9a_E10a KnownJunction 0 72.75 155.56 68.00 128.06 237.18 242.42 153.73 117.43 113.92 95.95 198.89 423.89 315.56 293.78 213.24 237.63 141.09 78.64 83.11 61.30 138.44 395.69 332.92 51 ER10a ExonRegion 0 79.08 132.14 76.86 136.61 216.39 226.61 141.80 121.36 125.61 105.98 211.96 493.65 486.17 298.46 140.12 253.14 180.78 64.63 83.97 55.05 171.00 407.22 302.72 52 E10a_E11a KnownJunction 0 154.92 170.30 92.93 165.18 234.04 271.55 219.40 111.72 128.64 106.67 238.69 646.41 655.64 393.26 219.54 274.89 192.15 50.74 101.56 68.46 210.48 463.23 344.61 53 ER11a ExonRegion 0 133.10 191.75 86.48 155.38 167.41 214.24 182.63 114.11 135.01 110.90 252.06 698.68 580.99 268.44 204.43 239.77 182.61 58.75 93.70 78.39 199.75 405.96 280.76 54 E11a_E12a KnownJunction 0 163.66 235.02 75.51 171.34 156.03 193.64 215.16 135.34 153.15 114.24 295.55 592.39 625.61 241.86 274.68 213.88 247.12 45.47 129.51 100.80 188.85 593.60 303.21 55 ER12a ExonRegion 0 155.56 207.36 104.00 177.44 222.77 225.54 184.09 116.65 153.90 130.87 314.57 884.55 789.38 278.71 212.71 240.70 247.36 40.03 98.15 96.16 154.57 497.70 306.71 56 E12a_E13a KnownJunction 0 213.00 247.00 106.92 213.69 189.56 245.94 201.07 135.71 169.50 129.85 295.50 1057.54 686.32 281.07 224.86 215.93 199.25 78.68 135.53 106.49 117.50 494.03 345.72 57 ER13a ExonRegion 0 136.97 167.41 118.02 178.06 173.84 257.07 212.35 131.85 154.95 116.74 314.72 846.89 817.02 274.40 223.56 238.91 233.91 80.40 131.66 105.50 147.15 535.58 342.42 58 E13a_E14a KnownJunction 0 113.06 149.32 104.96 161.95 77.50 140.15 134.78 94.68 111.60 112.90 194.00 595.24 347.38 236.27 113.11 225.67 222.91 48.71 124.43 67.05 162.72 344.01 293.99 59 E13a_E15a KnownJunction 0 7.56 2.96 1.54 13.82 3.82 15.10 6.09 3.41 14.73 5.37 10.21 61.37 6.82 39.50 25.84 37.68 30.39 4.60 30.40 3.26 26.07 95.65 50.62 60 ER14a ExonRegion 0 146.60 106.81 94.18 139.48 119.03 149.20 129.38 119.71 127.80 118.27 253.00 768.94 523.79 224.52 180.89 208.27 202.88 69.65 104.90 81.35 210.94 331.30 275.51 61 E14a_E15a KnownJunction 0 234.78 101.89 137.40 171.41 181.24 169.22 172.41 124.58 136.08 138.53 292.81 636.21 535.52 275.30 170.10 231.14 250.40 92.73 98.36 97.03 299.06 296.92 214.77 62 ER15a ExonRegion 0 155.70 129.03 84.15 151.28 165.21 242.64 155.73 155.06 133.12 117.09 265.07 600.15 404.82 306.84 189.07 263.27 183.36 100.45 110.31 85.83 270.40 374.33 339.49 63 E15a_E16a KnownJunction 0 246.27 187.53 58.28 106.88 209.17 302.44 198.64 114.56 144.73 109.14 228.53 516.47 505.00 287.25 259.84 249.76 226.65 74.62 81.04 75.55 278.00 380.14 281.70 64 E15a_E17a KnownJunction 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 5.09 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER16a ExonRegion 0 97.12 93.75 68.31 107.53 84.91 166.57 97.68 94.64 94.80 75.15 140.50 348.57 205.89 193.50 172.11 160.26 105.63 55.06 54.61 71.02 169.69 243.70 186.54 66 E16b_E17a KnownJunction 0 138.91 137.02 102.45 133.38 121.65 156.67 105.90 134.35 104.05 90.23 108.71 145.10 81.81 173.29 205.95 167.99 107.34 49.21 26.82 64.88 148.95 313.52 201.63 67 ER16b ExonRegion 0 99.48 103.71 87.00 115.85 93.65 141.20 87.38 95.06 90.16 74.55 123.71 160.19 107.87 168.91 150.87 145.63 95.73 62.82 31.85 78.72 178.50 270.86 205.56 68 I16_SR2 SilentIntronRegion 0 10.17 4.89 14.11 11.86 3.96 5.76 5.33 13.05 15.24 9.48 5.21 9.77 13.00 5.66 8.94 12.08 9.27 17.01 9.18 7.16 21.99 24.49 31.26 69 E17_Aa NovelBoundary 0 7.04 0.00 5.03 7.03 12.05 0.00 7.82 15.69 15.45 9.51 4.42 0.00 0.00 0.00 0.00 8.72 13.65 20.89 9.60 4.99 20.63 34.54 39.44 70 ER17a ExonRegion 0 140.66 98.36 91.56 113.02 100.98 137.02 99.76 109.22 105.34 93.11 163.25 141.13 105.49 244.74 205.92 179.28 138.02 82.00 64.18 80.64 184.73 331.47 234.64 71 E17_Da NovelBoundary 0 24.37 9.08 6.36 9.19 17.23 19.02 20.89 22.18 17.85 5.59 12.32 25.21 0.00 4.94 6.18 11.62 13.56 20.52 4.80 12.14 23.35 33.25 33.80 72 E17a_E18a KnownJunction 0 229.08 108.80 74.07 119.10 151.53 180.75 130.90 104.62 107.00 91.73 127.98 306.55 315.08 219.14 211.63 184.91 114.91 49.66 50.17 82.39 149.62 329.80 203.93 73 I17 Intron 0 24.05 12.32 13.83 14.36 11.89 13.15 15.11 10.40 15.89 7.42 8.59 20.72 18.64 8.39 9.97 14.11 7.17 17.16 7.72 11.50 20.36 36.83 20.32 74 I17_AR1 ActiveIntronRegion 0 23.94 12.34 14.23 14.81 12.14 13.72 15.52 10.96 16.37 7.67 8.94 21.49 18.90 8.56 9.34 14.77 7.51 17.64 7.68 11.55 20.90 38.58 20.85 75 I17_AR2 ActiveIntronRegion 0 25.66 12.30 9.67 9.61 9.35 7.02 10.90 4.31 10.78 4.83 4.77 12.40 16.10 6.66 17.30 6.86 3.34 12.16 8.38 11.11 14.58 17.83 14.68 76 E18_Aa NovelBoundary 0 24.60 21.77 12.09 25.87 46.52 20.78 18.46 10.76 33.33 13.14 7.84 11.70 13.64 9.54 24.85 3.50 8.04 9.66 3.86 8.88 5.62 24.06 20.15 77 ER18a ExonRegion 0 275.03 141.04 98.88 147.61 164.42 225.52 144.67 137.60 120.98 102.96 168.13 289.92 248.57 201.65 217.65 194.99 103.04 85.33 50.97 74.39 142.49 407.14 254.49 78 E18_Da KnownBoundary 0 617.52 227.20 154.22 201.17 182.94 310.56 212.95 195.27 146.21 134.36 218.06 328.16 299.66 264.88 267.38 260.10 127.54 111.30 62.50 80.02 147.09 536.04 352.38 79 ER18b ExonRegion 0 212.48 95.28 129.71 165.45 170.92 185.68 136.76 172.59 144.63 140.61 175.43 466.11 341.58 200.50 256.47 136.68 103.55 48.10 55.81 66.95 105.57 400.83 202.77 80 ER18c ExonRegion 1 67.73 20.00 25.12 24.76 30.77 16.20 22.07 5.76 10.09 7.07 9.34 107.52 54.72 5.96 17.41 3.47 3.85 1.85 11.15 4.26 2.94 23.61 25.45 81 ER18d ExonRegion 0 1.94 0.00 0.71 2.33 0.78 0.00 5.30 0.00 1.96 0.00 0.00 2.53 4.69 0.00 0.00 0.00 0.00 1.62 3.72 1.24 0.00 6.60 6.97