Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CERK Gene 0 36.20 194.72 87.23 89.85 59.18 156.60 70.97 56.74 130.38 110.48 58.69 32.87 38.93 79.55 58.05 41.32 69.61 144.05 163.96 153.23 56.08 49.19 66.60 2 216264 Transcript 0 43.76 269.18 141.51 160.37 61.21 232.20 114.18 96.40 218.55 207.58 97.33 74.51 114.88 134.85 108.99 65.47 120.40 279.50 298.62 266.57 108.54 95.41 122.33 3 443629 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 460254 Transcript 0 5.55 10.37 17.59 10.50 6.42 6.68 6.66 6.80 12.61 6.02 5.31 1.22 1.69 6.79 12.89 3.24 12.67 13.15 12.21 13.70 2.42 1.21 3.89 5 471929 Transcript 0 0.39 5.28 2.70 3.38 2.97 1.02 0.49 1.43 2.38 2.50 0.00 0.00 0.87 0.46 1.14 0.55 0.00 5.26 5.86 2.36 1.63 0.75 1.09 6 IG10_AR3 ActiveIntergenicRegion 0 15.80 36.99 104.65 54.25 21.38 54.38 11.83 21.13 34.26 17.79 15.04 6.64 1.22 17.35 38.85 14.06 12.84 26.56 19.77 46.31 4.63 8.11 9.89 7 ER1a ExonRegion 0 2.81 13.27 0.00 0.82 9.92 67.42 15.45 3.96 4.92 10.45 12.76 0.00 1.19 6.94 7.65 16.43 23.83 34.17 26.47 18.68 11.58 3.41 48.16 8 E1_Ab KnownBoundary 0 13.34 60.98 3.96 3.73 36.84 193.70 50.39 17.37 38.34 42.60 38.80 0.00 5.84 21.90 13.35 55.63 73.77 164.40 112.94 79.26 19.89 12.19 105.25 9 ER1b ExonRegion 0 10.31 39.61 7.69 7.30 8.99 66.68 18.91 10.75 25.47 36.16 29.16 4.92 5.93 23.35 17.09 23.93 35.12 59.25 99.02 47.01 16.09 5.57 26.45 10 E1_Ac KnownBoundary 1 22.97 90.12 27.67 17.65 7.81 13.69 6.32 31.30 56.13 61.97 31.53 18.01 12.66 48.50 37.21 3.85 73.21 45.27 70.21 62.26 42.81 18.86 26.80 11 ER1c ExonRegion 1 10.28 102.00 32.94 31.51 10.48 35.35 11.98 32.80 76.83 91.45 68.91 16.43 10.91 73.24 26.71 31.15 94.14 85.40 105.12 108.02 52.20 28.19 64.64 12 E1a_E2a KnownJunction 0 0.00 0.00 3.46 0.00 0.00 0.00 0.00 2.34 7.52 4.30 2.11 0.00 0.00 5.12 13.23 0.00 8.23 2.57 4.80 5.75 2.90 0.00 3.41 13 E1a_E3a KnownJunction 1 29.49 189.44 63.39 51.41 37.18 99.09 28.40 44.32 105.84 132.08 51.54 12.60 32.63 80.17 45.00 97.58 33.29 212.70 290.83 166.50 50.97 26.88 120.62 14 I1_AR1 ActiveIntronRegion 0 3.60 8.76 21.59 15.95 5.67 2.25 8.53 8.07 7.35 12.54 2.22 0.31 1.94 0.71 5.67 2.10 8.17 22.12 11.89 14.28 3.46 0.18 4.14 15 ER2a ExonRegion 0 11.10 20.74 31.72 21.00 12.84 13.36 13.31 11.26 17.70 7.74 8.50 2.45 3.38 8.46 12.55 6.47 17.12 23.73 19.61 21.64 1.93 2.43 4.36 16 E2_Da NovelBoundary 0 3.33 24.86 33.17 26.64 4.16 18.17 29.81 26.08 17.13 11.36 2.32 6.30 0.00 12.77 13.35 4.10 4.21 39.67 22.02 35.09 8.65 0.00 8.37 17 I2 Intron 0 11.82 17.23 15.65 13.04 7.75 7.52 8.01 6.75 9.16 7.42 1.81 2.78 4.82 2.43 5.25 3.02 4.81 18.77 9.15 14.19 2.51 1.16 3.41 18 I2_SR1 SilentIntronRegion 1 0.00 0.00 0.00 0.00 0.00 1.67 1.21 0.00 0.00 0.00 3.52 3.17 0.00 3.48 15.65 2.71 6.01 0.00 0.00 5.78 2.01 0.00 2.62 19 I2_AR1 ActiveIntronRegion 0 20.46 43.71 36.00 32.81 18.73 16.09 24.75 15.40 25.74 10.87 4.42 5.73 10.53 11.93 11.22 4.54 5.04 17.18 10.13 24.90 3.92 5.56 2.99 20 I2_SR2 SilentIntronRegion 0 22.34 16.08 13.38 13.62 7.64 7.36 8.22 5.97 9.75 7.71 1.44 4.27 7.59 3.34 8.40 2.46 4.24 18.21 6.46 12.59 1.28 0.86 3.53 21 E3_Aa NovelBoundary 0 3.48 38.09 18.95 12.95 26.49 2.38 1.85 17.50 7.26 6.50 0.00 6.30 5.84 0.00 0.00 0.00 7.95 11.40 4.71 15.53 0.00 0.00 0.00 22 ER3a ExonRegion 0 29.95 313.31 169.10 143.87 107.19 265.53 111.50 111.52 250.07 211.20 110.65 49.71 84.26 167.38 109.31 93.28 130.62 317.99 416.11 363.14 107.02 95.68 144.95 23 E3a_E4a KnownJunction 0 35.04 372.57 291.89 304.19 199.83 579.67 280.30 227.10 376.18 300.50 217.53 105.03 111.84 322.15 155.76 111.34 193.08 427.51 541.38 569.50 176.44 182.48 202.57 24 ER4a ExonRegion 0 24.35 236.59 266.30 262.02 65.87 197.75 94.56 168.73 373.42 313.78 186.60 91.38 117.98 220.54 163.63 102.48 229.05 378.79 461.33 485.07 182.89 169.53 160.56 25 E4a_E5a KnownJunction 0 25.93 232.06 354.39 347.81 35.06 191.03 60.33 205.00 446.87 348.67 227.06 87.48 132.78 254.93 144.88 104.33 273.96 456.98 754.56 548.60 199.60 221.18 205.38 26 I4 Intron 0 22.01 19.71 12.20 28.14 10.99 14.16 16.18 10.18 9.76 9.95 2.31 4.69 13.85 1.44 8.68 9.12 11.16 26.30 25.17 24.34 4.01 1.79 10.46 27 I4_AR3 ActiveIntronRegion 1 47.50 36.34 17.82 45.08 17.99 19.80 24.94 21.16 15.47 16.56 3.04 9.11 27.61 1.11 15.01 10.77 18.80 43.93 24.03 42.34 7.11 3.07 10.78 28 I4_SR3 SilentIntronRegion 0 11.23 10.88 8.56 21.29 8.08 10.80 11.67 4.94 6.35 7.54 1.59 2.58 8.13 1.49 6.85 11.28 5.52 21.65 39.19 17.11 2.49 0.78 15.67 29 I4_AR4 ActiveIntronRegion 0 20.02 23.81 20.14 41.28 14.54 21.02 24.29 12.56 15.92 13.21 1.24 7.58 12.34 1.24 3.22 7.19 15.88 24.55 15.86 23.92 4.58 2.35 8.01 30 E5_Aa NovelBoundary 0 45.56 46.44 16.23 49.68 24.36 18.74 25.61 29.94 11.46 9.51 4.42 12.45 0.00 0.00 5.44 3.76 17.39 15.05 23.34 35.41 2.47 0.00 0.00 31 ER5a ExonRegion 0 77.50 364.58 323.25 354.16 100.77 349.63 148.77 211.20 472.15 410.56 235.72 150.78 210.83 294.71 205.67 135.44 269.97 564.58 712.43 612.07 216.84 210.95 237.31 32 E5_Da NovelBoundary 0 20.45 15.39 22.00 26.04 0.00 10.73 9.72 21.40 11.43 18.88 2.05 7.50 0.00 2.47 4.45 11.19 17.58 14.92 51.58 44.23 5.93 2.57 0.00 33 E5a_E6a KnownJunction 1 78.16 432.88 295.85 306.22 128.01 363.31 180.01 202.54 408.30 418.51 175.57 190.11 262.81 255.11 257.25 130.99 240.21 564.06 566.42 500.34 201.52 172.19 218.19 34 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 I5 Intron 0 27.34 23.68 7.82 26.39 20.50 16.39 23.27 10.45 9.81 8.99 2.18 9.60 24.56 1.33 6.15 5.80 7.19 18.44 15.31 16.30 4.13 1.10 4.41 36 I5_SR1 SilentIntronRegion 0 29.07 25.36 8.53 28.80 21.84 17.78 24.25 11.41 10.71 9.71 2.24 10.28 25.93 1.45 6.23 6.14 7.33 20.01 16.30 16.75 4.35 1.20 4.81 37 E6_Aa NovelBoundary 0 24.75 25.59 8.01 51.74 11.88 13.12 34.89 20.70 28.70 13.73 5.00 6.30 12.66 2.24 0.00 0.00 16.83 34.32 32.10 50.43 5.81 0.00 18.78 38 ER6a ExonRegion 0 65.68 472.46 218.23 253.45 102.64 390.37 191.56 151.48 352.86 326.67 187.34 118.93 193.17 241.21 171.22 96.97 210.54 405.32 531.76 472.94 189.79 163.78 196.76 39 E6_Da NovelBoundary 1 40.82 31.11 18.12 36.83 16.04 30.27 20.80 15.24 12.79 17.70 0.00 6.30 20.29 0.00 6.30 12.13 8.04 21.89 19.58 11.57 2.35 0.00 4.27 40 E6a_E7a KnownJunction 0 51.05 353.10 178.91 225.05 45.93 293.64 158.81 113.08 305.21 270.04 107.29 57.47 109.08 162.46 103.10 77.93 121.83 382.03 348.72 325.02 134.61 130.30 139.82 41 I6_SR1 SilentIntronRegion 0 15.02 18.64 3.43 16.51 8.18 7.46 11.75 4.24 5.42 6.89 1.15 4.58 9.96 0.60 5.62 5.32 6.33 11.05 13.83 16.65 3.67 0.90 8.79 42 I6_AR1 ActiveIntronRegion 0 6.01 7.16 9.79 18.22 3.18 6.93 7.76 8.89 9.59 13.32 2.04 4.04 7.70 0.90 6.01 5.90 11.51 42.68 19.21 16.97 8.91 0.89 11.70 43 ER7a ExonRegion 0 50.36 306.68 201.86 209.24 52.75 229.69 94.62 117.84 282.77 293.39 121.97 112.98 139.00 204.29 137.39 72.84 157.04 352.84 362.74 369.89 150.06 115.74 162.14 44 E7a_E8a KnownJunction 0 74.24 361.84 185.77 220.95 51.44 294.66 105.81 130.37 323.78 267.76 141.14 90.93 74.35 234.86 104.46 77.07 133.33 456.48 370.55 374.11 116.08 100.06 192.32 45 ER8a ExonRegion 0 53.05 324.72 212.63 225.09 80.59 381.41 143.02 128.25 330.32 282.70 157.75 61.94 70.10 240.26 160.34 102.16 196.47 531.27 471.73 400.74 162.25 122.37 200.12 46 E8a_E9a KnownJunction 0 60.60 448.87 259.16 285.31 87.44 373.93 165.12 137.89 374.50 296.21 214.11 43.96 98.86 226.03 148.71 148.85 232.73 716.85 555.69 439.37 175.32 183.64 178.49 47 I8 Intron 0 10.49 4.18 8.76 11.35 5.93 8.61 8.17 5.71 8.06 5.41 2.24 2.20 7.28 2.95 8.47 4.70 8.53 12.60 12.60 14.70 1.63 0.33 4.96 48 I8_SR1 SilentIntronRegion 0 10.51 4.19 8.78 11.38 5.94 8.62 8.19 5.72 8.07 5.42 2.25 2.21 7.29 2.96 8.49 4.71 8.55 12.63 12.63 14.73 1.63 0.33 4.97 49 E9_Aa NovelBoundary 1 20.08 7.89 14.01 8.56 7.22 16.30 13.82 8.95 6.08 7.47 2.47 0.00 6.33 2.77 30.78 0.00 7.95 10.40 4.14 42.31 0.00 0.00 3.67 50 ER9a ExonRegion 0 52.59 363.07 217.46 230.14 85.34 330.38 137.41 135.81 327.84 293.93 182.59 66.24 96.31 204.20 161.10 110.73 194.45 441.59 375.98 477.47 156.41 107.73 167.54 51 E9_Da NovelBoundary 0 22.08 35.78 41.42 53.41 33.87 9.99 22.48 26.82 29.08 17.84 12.48 0.00 20.13 13.95 16.69 12.13 17.58 84.32 26.45 52.99 11.80 5.02 28.08 52 E9a_E10a KnownJunction 0 80.09 490.31 258.74 313.05 137.61 460.25 181.46 151.48 416.23 361.40 211.05 89.88 80.19 247.22 175.66 140.90 193.92 421.58 533.38 491.65 167.54 127.86 213.66 53 I9 Intron 0 10.06 13.30 13.60 19.95 8.94 9.11 9.31 7.90 12.19 11.79 4.18 3.19 6.43 7.71 10.46 13.14 10.90 29.70 19.59 19.52 6.62 4.22 8.48 54 I9_SR1 SilentIntronRegion 0 10.08 13.33 13.62 19.99 8.95 9.13 9.33 7.91 12.21 11.81 4.18 3.20 6.44 7.73 10.48 13.17 10.91 29.76 19.62 19.56 6.64 4.22 8.50 55 E10_Aa NovelBoundary 0 42.23 30.46 25.78 26.80 11.54 53.44 36.26 23.33 19.53 15.42 7.79 0.00 6.49 28.84 4.45 27.94 13.00 58.62 60.61 18.47 17.17 9.19 16.65 56 ER10a ExonRegion 0 80.85 383.14 210.35 246.12 147.42 432.48 169.20 137.05 342.59 296.01 182.77 106.03 79.07 218.72 179.19 133.33 219.63 532.12 465.96 489.66 171.85 127.25 185.70 57 E10_Da NovelBoundary 0 2.96 11.91 2.99 20.58 8.40 8.01 0.00 16.76 7.38 9.67 0.00 0.00 0.00 0.00 0.00 8.12 17.58 20.31 17.69 15.08 5.37 0.00 3.93 58 E10a_E12a KnownJunction 0 81.57 380.20 232.16 182.23 137.01 413.17 170.25 138.67 311.74 306.20 179.57 91.38 72.24 159.81 102.85 115.87 140.72 448.73 347.59 454.90 168.41 102.38 144.78 59 E11_Aa NovelBoundary 0 16.23 11.64 17.03 8.09 20.03 5.56 7.33 11.50 13.63 13.05 0.00 12.60 6.66 0.00 4.45 0.00 4.77 36.81 0.00 19.94 2.59 0.00 4.35 60 ER11a ExonRegion 0 0.78 10.55 5.40 6.76 5.93 2.03 0.98 2.86 4.76 4.99 0.00 0.00 1.73 0.92 2.27 1.10 0.00 10.52 11.73 4.72 3.26 1.49 2.17 61 E11_Da NovelBoundary 0 29.49 30.85 17.18 23.84 18.17 5.79 8.57 4.39 3.15 17.65 0.00 6.30 6.82 0.00 0.00 4.36 0.00 21.72 4.80 24.10 9.39 0.00 4.27 62 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E12_Aa NovelBoundary 0 18.89 14.80 18.95 29.00 10.10 0.00 6.54 11.38 8.28 12.65 0.00 0.00 0.00 0.00 8.90 12.65 4.58 20.93 16.94 5.37 0.00 0.00 4.27 64 ER12a ExonRegion 0 56.87 390.13 220.22 215.46 117.42 387.74 143.07 142.20 328.41 305.46 189.47 81.81 75.10 210.42 188.17 135.95 186.48 443.65 504.57 423.87 173.61 138.13 175.59 65 E12_Da NovelBoundary 0 13.19 15.72 22.94 30.10 18.59 7.61 14.44 21.81 24.33 13.24 15.21 0.00 13.64 7.42 28.31 20.42 35.44 23.17 48.10 39.44 8.34 11.88 4.35 66 E12a_E13a KnownJunction 0 87.27 385.98 236.09 285.44 125.89 367.74 158.81 152.26 339.72 320.97 189.26 67.22 47.07 232.86 146.98 134.15 152.78 470.16 627.22 433.74 197.69 210.34 155.45 67 I12 Intron 0 11.82 18.99 19.24 18.64 12.82 11.42 7.19 13.58 15.28 11.46 8.94 1.75 3.99 14.49 15.96 14.71 19.76 35.20 15.51 13.08 5.63 4.33 5.63 68 I12_SR1 SilentIntronRegion 0 11.86 19.05 19.30 18.70 12.86 11.45 7.21 13.62 15.32 11.49 8.97 1.75 3.98 14.53 16.01 14.75 19.82 35.30 15.56 13.12 5.65 4.34 5.64 69 E13_Aa NovelBoundary 0 10.67 28.48 25.28 26.64 35.57 52.92 38.38 16.06 18.75 19.34 6.21 0.00 0.00 10.89 33.50 15.38 21.51 41.91 17.13 35.60 12.17 5.88 4.27 70 ER13a ExonRegion 0 80.56 541.90 255.31 230.68 155.23 432.22 177.15 158.72 384.50 316.45 172.62 62.08 59.15 224.53 175.00 133.98 222.95 496.67 490.67 393.33 174.24 136.93 188.50 71 E13a_E14a KnownJunction 1 77.20 668.63 337.66 229.97 219.69 659.68 356.17 148.61 372.31 303.03 155.88 44.26 19.15 222.09 156.50 108.86 135.58 415.69 464.86 413.99 146.54 174.03 156.13 72 I13 Intron 0 16.43 31.46 18.32 19.53 22.53 9.64 16.29 16.15 17.26 14.08 3.81 6.57 22.95 9.50 10.72 6.74 11.83 14.66 12.55 16.90 5.92 6.84 8.42 73 I13_SR1 SilentIntronRegion 0 11.10 17.38 4.53 11.78 23.60 14.66 13.50 7.81 7.10 6.13 2.13 0.98 7.91 4.32 5.41 8.19 3.64 13.94 7.90 11.14 3.65 3.45 5.67 74 I13_AR1 ActiveIntronRegion 0 21.75 40.90 28.62 28.33 30.36 9.71 22.49 23.39 27.09 21.23 5.22 10.73 37.17 12.11 14.97 6.78 16.41 16.60 15.14 22.98 4.52 10.81 10.47 75 I13_SR2 SilentIntronRegion 0 8.85 22.39 6.68 5.82 2.79 4.82 4.11 6.74 3.29 4.49 2.03 1.87 3.05 8.22 5.61 5.35 8.66 10.82 10.85 7.82 11.53 0.55 6.18 76 E14_Aa NovelBoundary 0 24.15 46.50 24.93 29.40 4.33 20.84 28.93 22.39 22.66 11.66 2.32 0.00 0.00 12.07 4.45 0.00 8.42 54.14 18.07 20.33 14.89 2.51 15.02 77 ER14a ExonRegion 0 92.85 504.30 250.26 230.41 197.27 474.63 215.09 128.66 337.41 261.82 137.49 77.10 71.70 213.94 185.52 125.99 166.58 342.07 367.87 424.15 142.74 103.80 193.58 78 E14_Da KnownBoundary 0 98.98 523.06 254.37 254.91 107.13 328.84 131.69 102.56 401.01 274.26 105.34 31.66 55.68 216.32 194.08 77.24 98.18 197.57 317.66 431.76 85.07 92.65 141.96 79 ER14b ExonRegion 0 74.04 483.70 224.18 227.82 108.26 287.50 105.64 108.62 345.89 283.80 128.68 37.66 52.71 197.11 150.91 74.30 132.93 186.12 229.80 383.86 135.16 125.11 142.59 80 E14b_E15a KnownJunction 0 121.65 612.59 247.60 260.67 150.59 361.21 125.29 158.63 359.66 341.25 153.41 24.31 40.26 188.83 160.95 86.64 178.12 269.65 252.34 408.18 150.43 124.43 127.45 81 E15_Aa NovelBoundary 0 3.70 11.97 5.77 8.42 0.00 10.51 5.34 21.65 10.33 10.18 0.00 0.00 0.00 4.47 0.00 0.00 7.48 16.83 4.24 0.00 0.00 3.12 3.50 82 ER15a ExonRegion 0 137.39 875.68 222.68 266.00 337.20 653.99 324.65 189.07 391.00 347.41 156.00 112.66 110.55 229.60 134.86 112.85 160.15 274.75 433.95 334.20 118.76 146.96 183.74 83 E15_Da KnownBoundary 0 139.58 683.76 230.30 289.57 172.33 454.57 215.82 245.66 385.99 346.55 98.76 61.97 89.44 189.42 77.01 64.85 116.41 245.40 401.52 296.51 47.94 168.33 116.86 84 ER15b ExonRegion 0 21.08 74.18 14.57 16.33 19.54 46.24 25.07 10.93 21.45 12.22 3.71 6.03 8.13 8.53 5.75 5.06 5.61 11.94 19.76 15.88 5.18 7.38 8.71 85 IG9 Intergenic 0 6.93 13.13 14.50 17.79 5.68 6.49 6.85 5.81 8.02 10.36 1.54 1.33 1.68 3.37 6.03 0.85 1.17 8.47 8.46 12.05 3.75 1.20 4.16 86 IG9_AR2 ActiveIntergenicRegion 0 8.93 19.17 5.28 19.20 16.99 10.11 19.95 1.59 5.54 9.02 0.00 7.35 8.29 1.37 5.87 2.35 3.48 10.76 5.56 10.24 2.77 0.82 1.50 87 IG9_AR1 ActiveIntergenicRegion 0 15.59 25.89 36.91 38.01 9.60 11.01 8.26 11.34 12.08 16.14 2.48 0.57 0.93 4.40 6.88 0.71 1.85 9.93 11.43 18.38 4.05 1.50 5.17