Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TTC38 Gene 0 38.95 32.18 49.40 54.11 41.38 54.24 19.10 41.60 38.28 34.50 71.55 25.80 26.18 80.45 87.63 51.01 66.15 44.05 37.05 34.24 64.24 49.72 43.57 2 417709 Transcript 0 0.00 2.69 5.99 10.91 5.34 9.92 1.84 4.20 4.15 4.17 1.51 0.31 0.00 2.82 2.43 2.17 2.06 7.67 5.41 7.09 1.87 2.86 0.76 3 381031 Transcript 0 1.06 0.00 1.23 2.04 4.01 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 475467 Transcript 0 9.57 12.66 7.41 5.86 6.08 3.90 14.87 5.34 5.03 2.08 2.93 9.19 9.63 8.88 9.40 4.96 12.53 8.93 5.32 12.29 5.50 4.74 8.02 5 421359 Transcript 0 1.86 0.01 2.15 0.60 0.78 4.37 0.21 0.75 0.81 1.94 0.86 1.60 0.57 3.89 4.90 4.65 3.44 0.82 0.47 4.04 3.99 1.83 1.32 6 445282 Transcript 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 422713 Transcript 0 7.47 2.93 4.96 5.48 13.43 3.96 3.61 0.00 3.30 6.44 4.13 2.34 4.68 9.13 4.85 7.42 3.89 4.00 1.64 3.43 4.46 9.46 2.95 8 451998 Transcript 0 28.80 21.70 38.44 43.83 18.21 38.80 9.64 26.16 29.31 15.61 32.15 11.50 13.14 48.93 53.56 27.05 36.02 27.49 12.27 22.34 8.08 21.65 15.44 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 1.01 4.90 0.28 0.53 2.61 17.80 1.17 0.39 0.73 1.33 3.60 0.00 1.49 2.84 5.80 0.81 2.10 4.83 0.51 0.48 6.61 1.09 2.27 11 E1_Ac KnownBoundary 0 3.56 17.96 1.12 1.50 10.95 65.08 5.61 1.64 1.62 3.79 17.32 0.00 6.82 11.83 17.80 3.59 16.83 13.27 0.00 2.56 28.23 4.84 8.02 12 ER1c ExonRegion 1 52.25 33.30 14.67 16.40 22.83 161.40 21.12 13.96 17.89 13.57 62.94 0.00 2.05 47.28 84.68 24.89 51.11 41.26 30.81 58.44 80.23 47.37 55.89 13 E1a_E2a KnownJunction 1 95.79 33.68 32.32 40.09 43.46 150.48 29.94 33.27 50.52 25.79 77.39 0.00 0.00 22.25 55.26 28.80 52.64 66.74 35.39 90.70 75.99 67.42 71.11 14 ER2a ExonRegion 1 17.12 6.67 15.38 9.75 8.40 31.95 8.08 17.93 23.51 13.92 30.01 0.89 7.76 12.66 21.02 10.48 18.96 27.93 9.23 20.46 45.77 15.63 14.91 15 E2_Da KnownBoundary 0 3.11 0.00 8.25 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 5.62 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 3.16 7.48 5.13 4.16 4.83 1.81 2.51 5.79 6.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 4.71 6.52 0.00 0.00 0.00 17 E2a_E4a KnownJunction 0 11.19 3.22 3.90 1.60 7.98 2.16 0.00 6.16 8.19 8.49 44.91 12.75 32.95 19.90 16.56 12.48 45.25 6.63 9.13 0.00 58.19 13.53 7.77 18 ER2b ExonRegion 0 9.57 12.66 7.41 5.86 6.08 3.90 14.87 5.34 5.03 2.08 2.93 9.19 9.63 8.88 9.40 4.96 12.53 8.93 5.32 12.29 5.50 4.74 8.02 19 E2_Db NovelBoundary 0 66.97 58.81 1899.58 1549.92 75.21 14.08 63.37 1374.67 1926.83 1062.82 23.58 22.21 8.12 5.77 30.66 67.42 27.77 1839.83 97.51 50.43 39.60 23.94 33.97 20 ER3a ExonRegion 0 0.00 2.14 10.49 14.83 4.63 6.64 1.77 7.59 6.01 5.28 3.51 1.23 0.00 3.91 5.25 4.84 4.68 13.78 7.34 15.34 7.49 5.93 3.04 21 E3_Da NovelBoundary 0 3.11 14.73 7.07 7.03 3.48 8.18 5.43 3.57 5.21 0.00 0.00 0.00 6.17 2.35 8.90 16.06 3.93 1.70 4.80 3.26 8.40 0.00 18.10 22 E3a_E4a KnownJunction 0 0.00 5.46 6.00 23.67 12.56 28.22 3.80 6.70 4.80 5.16 2.53 0.00 0.00 7.36 4.45 3.85 3.55 14.38 9.60 6.52 0.00 5.51 0.00 23 ER4a ExonRegion 1 11.03 12.25 13.16 23.24 9.44 27.60 3.24 20.29 32.05 22.00 94.56 14.36 16.29 45.35 43.37 6.73 73.49 16.19 25.40 30.29 106.07 13.16 6.26 24 E4_Ab KnownBoundary 1 29.12 20.65 24.10 33.06 3.82 54.46 3.80 29.24 52.98 32.85 121.29 25.21 13.64 60.51 37.46 4.19 99.49 22.43 33.88 54.84 158.21 13.53 10.67 25 ER4b ExonRegion 1 19.58 19.04 30.61 49.81 8.33 34.43 5.81 37.48 58.98 34.59 118.39 35.62 16.73 89.18 82.62 36.75 85.45 54.72 50.24 70.79 134.38 56.59 48.72 26 E4a_E5a KnownJunction 0 17.26 24.67 47.43 76.51 19.61 55.82 9.89 47.65 68.66 45.80 93.13 63.17 34.25 129.97 150.94 74.94 60.59 93.39 79.91 82.52 68.76 110.28 102.35 27 ER5a ExonRegion 0 18.32 48.34 44.46 49.35 43.43 124.33 26.13 38.40 56.30 46.66 97.52 34.74 43.08 77.40 81.07 65.02 74.04 61.06 48.78 51.86 99.19 84.88 74.29 28 E5a_E6a KnownJunction 0 33.12 73.87 94.44 84.30 68.93 148.95 28.00 55.16 89.12 67.58 125.40 30.31 88.31 104.89 116.08 64.77 118.65 94.76 61.74 67.43 94.95 99.50 103.72 29 E5a_E7a KnownJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER6a ExonRegion 0 39.49 52.23 95.35 93.86 48.73 94.87 31.01 71.37 82.75 70.41 156.16 41.93 76.03 123.30 105.13 81.42 128.04 102.36 95.73 61.14 125.67 93.76 80.06 31 E6_Da KnownBoundary 0 60.01 60.52 108.72 129.32 45.42 54.51 47.39 94.76 86.43 75.32 146.67 60.92 41.56 134.03 128.93 108.52 127.07 124.03 109.74 52.09 163.22 104.28 62.14 32 ER6b ExonRegion 0 54.33 42.03 95.83 108.99 70.06 81.47 29.08 95.90 88.19 76.23 183.97 83.09 80.08 137.08 102.31 109.51 127.45 120.55 84.79 66.74 144.86 141.14 121.76 33 E6b_E7a KnownJunction 0 56.90 26.51 125.16 119.47 82.94 60.02 29.63 103.01 101.07 80.56 126.66 60.02 81.33 111.01 112.86 73.06 92.57 137.83 80.94 55.16 117.38 93.69 80.75 34 ER7a ExonRegion 1 52.72 79.04 93.79 106.72 76.22 103.39 31.97 92.81 97.04 72.68 150.92 53.26 118.55 152.65 98.83 105.63 113.66 126.11 115.68 73.49 135.06 119.34 131.34 35 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.22 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 3.15 0.00 0.00 36 E7a_E9a KnownJunction 0 67.64 110.51 75.10 119.27 103.82 142.65 44.21 76.11 84.35 75.59 114.45 100.38 45.94 213.79 147.48 89.29 113.88 112.38 158.50 68.90 137.64 109.79 142.81 37 E8_Aa NovelBoundary 0 0.00 0.00 6.56 2.06 4.07 5.51 2.25 6.98 2.55 2.82 7.69 0.00 7.47 7.48 6.30 14.78 13.09 18.07 4.14 3.26 0.00 0.00 7.43 38 ER8a ExonRegion 0 3.72 0.02 4.30 1.19 1.57 3.52 0.42 1.51 1.62 2.21 1.71 3.21 1.13 7.78 9.80 4.94 6.89 1.64 0.93 8.07 4.84 3.66 2.65 39 E9_Aa NovelBoundary 0 17.71 3.35 1.83 9.06 20.71 10.79 6.14 4.85 5.06 7.25 11.95 29.86 13.64 15.25 9.64 11.79 0.00 12.56 4.24 6.52 0.00 7.90 15.19 40 ER9a ExonRegion 0 32.89 44.28 76.62 73.83 61.19 93.05 26.07 63.84 62.35 60.24 117.79 54.84 47.02 107.61 101.30 57.19 108.13 83.26 73.32 59.68 127.03 86.24 77.80 41 E9a_E10a KnownJunction 0 10.08 6.31 6.09 6.53 3.90 8.06 6.62 0.00 3.33 8.43 0.00 0.00 6.33 7.24 0.00 7.60 0.00 0.00 0.00 3.07 2.41 17.39 0.00 42 E9a_E11a KnownJunction 0 33.27 33.55 78.44 65.66 60.44 63.15 19.70 70.07 65.94 56.41 79.34 44.56 26.30 60.69 29.05 47.34 86.02 94.93 55.15 63.09 105.27 99.50 86.81 43 ER10a ExonRegion 0 5.00 2.46 5.69 8.39 9.30 3.81 4.19 0.00 2.63 6.04 7.08 7.03 7.72 12.28 8.38 6.11 7.84 7.48 1.07 3.96 5.34 5.61 5.18 44 E10a_E11a KnownJunction 0 7.33 0.00 3.10 1.53 27.08 0.00 0.00 0.00 3.94 4.84 5.32 0.00 0.00 7.89 6.18 8.54 3.83 4.52 3.86 3.26 5.62 5.39 3.67 45 ER11a ExonRegion 0 29.53 50.33 75.22 67.92 97.49 72.44 25.35 77.64 71.62 64.51 127.54 32.54 57.06 131.09 105.70 69.10 114.27 107.72 82.93 54.11 140.78 98.03 108.80 46 E11_Da NovelBoundary 0 15.78 11.25 6.06 14.35 0.00 0.00 4.24 4.03 3.33 3.30 4.47 19.36 6.66 0.00 0.00 17.60 4.21 2.40 0.00 3.20 6.05 2.33 12.98 47 E11a_E12a KnownJunction 1 51.19 69.92 70.16 87.00 106.88 80.52 53.35 78.12 69.73 59.31 159.46 5.70 62.01 124.14 140.43 98.86 156.62 107.49 141.65 68.71 132.57 134.35 99.96 48 I11_AR1 ActiveIntronRegion 0 8.90 6.37 10.46 16.63 5.13 5.66 4.52 6.53 5.66 4.33 3.85 6.20 5.03 5.61 7.73 10.89 6.68 13.00 8.20 9.59 6.87 4.96 8.59 49 I11_AR3 ActiveIntronRegion 0 4.35 4.84 10.40 17.90 9.47 9.27 3.69 7.01 5.34 3.35 7.21 3.16 3.80 5.14 12.86 5.30 9.46 14.48 13.17 5.98 9.41 11.94 6.19 50 E12_Aa NovelBoundary 0 20.74 24.80 14.90 18.68 7.30 16.47 8.44 16.31 19.18 6.26 10.06 12.45 6.17 4.71 10.75 12.30 4.77 13.80 9.04 14.19 5.81 8.57 11.78 51 ER12a ExonRegion 1 53.40 49.38 55.17 67.76 56.67 61.50 28.14 71.04 53.24 52.90 152.75 22.76 34.75 96.28 148.19 74.07 120.27 96.51 105.93 65.03 140.75 103.32 99.24 52 E12_Da NovelBoundary 0 23.34 18.68 14.46 11.79 16.13 7.61 6.62 2.22 10.91 7.60 8.00 18.61 6.82 4.94 17.80 0.00 9.54 18.99 4.80 18.66 8.46 14.51 15.54 53 E12a_E13a KnownJunction 0 56.16 35.39 33.09 52.84 28.44 43.38 16.30 52.66 32.32 44.43 91.44 55.82 12.01 68.87 142.16 40.33 78.54 58.70 61.37 63.53 123.12 75.26 82.80 54 I12 Intron 0 8.63 7.72 17.85 15.20 10.31 13.83 4.81 8.92 10.90 7.16 7.13 10.54 8.45 11.42 15.64 10.13 10.33 9.65 10.85 9.51 7.75 9.43 11.32 55 I12_AR1 ActiveIntronRegion 0 13.22 13.61 20.70 21.01 9.36 15.85 5.42 8.94 14.41 10.16 8.40 16.76 9.32 13.80 10.11 11.98 4.56 10.79 13.58 16.97 5.62 10.36 13.36 56 I12_AR2 ActiveIntronRegion 0 7.86 10.82 20.24 28.55 8.82 16.79 4.70 13.14 16.19 9.60 8.71 9.28 10.46 8.78 14.60 13.55 12.08 17.62 8.58 10.97 14.05 13.19 13.23 57 I12_SR1 SilentIntronRegion 0 7.69 5.94 16.90 12.04 10.76 12.97 4.70 8.36 9.39 6.14 6.62 9.30 7.99 11.26 17.11 9.24 11.46 8.31 10.56 7.58 7.41 8.71 10.60 58 E13_Aa NovelBoundary 0 3.26 14.73 26.05 18.28 0.00 22.37 2.16 15.44 6.16 10.05 14.11 6.00 0.00 19.72 13.35 15.30 0.00 4.39 3.58 8.18 27.92 3.00 10.67 59 ER13a ExonRegion 0 23.90 16.62 43.62 48.32 33.90 33.63 14.74 41.67 41.78 47.08 78.71 20.06 29.06 85.80 87.71 31.03 64.09 34.03 36.05 47.20 80.65 41.64 40.43 60 E13_Da NovelBoundary 0 2.96 0.00 17.15 14.78 4.33 2.44 4.50 10.31 5.87 8.27 7.63 12.15 6.82 9.01 29.42 12.05 8.51 24.00 0.00 15.28 14.76 21.92 4.01 61 E13a_E14a KnownJunction 0 9.19 20.52 50.23 59.57 19.44 40.89 9.67 34.79 42.16 46.77 40.22 18.76 6.82 58.39 61.19 19.82 29.92 34.41 24.66 30.23 70.67 35.82 38.67 62 I13 Intron 0 5.64 5.42 10.63 9.62 3.70 6.69 3.59 8.64 7.53 6.49 11.82 7.73 4.06 17.03 13.11 9.68 13.35 14.49 6.28 9.76 9.56 10.28 7.24 63 I13_AR1 ActiveIntronRegion 0 9.09 6.53 9.10 3.84 1.92 3.98 3.19 4.02 2.37 1.99 9.58 1.16 0.00 17.41 15.77 4.52 7.35 9.55 0.67 11.18 12.07 3.73 8.60 64 I13_SR1 SilentIntronRegion 0 4.96 6.22 10.89 9.63 3.93 7.37 3.04 8.38 7.60 7.47 11.02 8.05 4.27 17.98 13.06 8.25 14.10 14.91 4.12 10.85 7.74 10.08 8.06 65 I13_AR2 ActiveIntronRegion 0 6.34 3.43 10.48 11.00 3.61 5.88 4.92 10.34 8.66 5.45 14.18 8.60 4.57 14.99 12.67 14.05 13.23 14.84 12.37 7.11 13.00 12.31 5.18 66 ER14a ExonRegion 0 16.72 24.38 63.68 62.60 35.39 50.60 11.24 64.72 46.77 59.46 58.12 7.53 12.15 70.82 74.28 38.60 58.70 43.57 32.07 42.67 69.99 55.54 45.85 67 E14_Ab KnownBoundary 1 41.12 51.04 101.03 96.59 98.90 73.65 30.74 87.78 55.73 64.90 126.40 6.30 41.72 130.14 85.67 98.95 117.34 113.38 87.53 70.24 105.64 126.26 113.45 68 ER14b ExonRegion 1 36.33 24.40 70.49 75.88 38.63 57.29 16.89 67.21 47.81 49.52 106.93 7.94 16.66 132.74 116.91 115.04 121.08 83.84 51.29 35.46 81.40 52.57 76.77 69 E14_Da NovelBoundary 0 0.00 0.00 15.37 4.13 0.00 2.27 1.99 2.42 1.30 7.58 2.42 0.00 0.00 2.47 15.20 0.00 0.00 2.20 3.67 0.00 0.00 5.45 0.00 70 E14a_E15a KnownJunction 1 57.27 21.18 61.15 65.43 40.07 45.03 2.03 65.72 56.05 37.61 91.71 6.30 20.13 89.76 102.48 67.59 83.31 59.53 34.35 32.79 66.41 28.11 48.74 71 ER15a ExonRegion 1 25.57 22.13 52.48 46.76 27.96 50.50 18.17 34.91 36.48 41.68 84.81 7.39 17.85 90.93 93.58 62.77 84.09 65.79 39.02 30.01 68.74 44.03 38.76 72 E15a_E16a KnownJunction 0 68.83 29.14 42.22 61.90 27.50 72.00 22.74 29.53 44.82 39.94 58.75 18.16 6.82 97.59 125.10 86.73 79.57 56.13 27.11 47.55 95.08 49.72 43.54 73 E16_Aa NovelBoundary 0 0.00 3.35 21.58 8.32 0.00 0.00 0.00 2.34 2.84 5.94 0.00 0.00 0.00 7.42 5.93 3.16 4.77 13.93 4.80 9.14 19.46 0.00 3.16 74 ER16a ExonRegion 0 51.85 28.09 52.28 62.16 35.83 56.43 20.31 30.93 50.76 46.50 92.86 16.56 18.76 116.32 132.36 129.93 98.85 53.78 45.24 42.35 73.88 48.09 49.72 75 E16_Da NovelBoundary 0 0.00 3.22 16.08 9.56 4.33 11.02 6.01 6.65 4.57 5.83 2.21 0.00 12.99 17.07 13.35 3.93 3.93 29.80 3.95 9.52 11.86 14.39 7.00 76 E16a_E17a KnownJunction 0 10.22 17.10 24.90 49.98 10.70 13.12 8.13 21.32 23.38 19.13 24.90 0.00 13.15 33.79 48.21 30.76 9.07 23.84 13.18 18.47 2.84 15.25 12.63 77 E16a_E18a KnownJunction 1 36.67 26.11 27.94 25.64 61.55 70.64 22.88 16.06 20.72 33.47 83.39 6.30 12.17 89.41 50.07 31.44 39.46 43.82 38.02 16.30 55.04 29.09 43.79 78 E17_Aa NovelBoundary 0 13.48 12.43 11.92 17.28 12.99 34.18 20.23 7.02 1.22 4.62 8.05 6.90 6.82 11.65 11.99 20.42 9.35 2.57 13.55 5.75 10.87 16.35 3.33 79 ER17a ExonRegion 0 23.94 20.95 37.87 37.61 18.14 42.47 12.35 26.15 23.75 16.49 29.64 15.60 19.47 46.55 51.28 29.01 41.76 29.04 19.97 25.30 15.85 23.02 15.08 80 E17a_E18a KnownJunction 0 52.23 27.03 52.54 43.92 25.81 60.82 8.44 31.01 40.80 11.20 41.91 18.91 6.82 66.46 61.19 21.36 57.22 29.60 3.67 23.27 5.56 26.70 18.61 81 ER18a ExonRegion 0 44.59 41.25 71.96 71.10 37.83 69.50 16.53 41.88 51.02 49.20 78.03 29.58 38.34 127.50 143.66 93.92 97.27 65.95 41.30 38.65 80.69 47.34 54.71 82 E18_Da KnownBoundary 0 58.97 43.28 78.92 78.48 36.08 51.73 24.86 59.11 52.98 47.52 110.71 49.37 26.46 144.09 193.34 89.72 100.33 106.91 34.73 49.15 69.75 82.48 82.89 83 ER18b ExonRegion 0 75.62 50.40 72.36 83.74 71.43 68.26 28.12 60.49 46.22 41.16 88.93 38.38 27.15 118.61 144.93 66.24 83.77 38.69 42.30 35.86 70.86 62.54 45.76 84 ER18c ExonRegion 0 1.06 0.00 1.23 2.04 4.01 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00