Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP3-402G11.1 Gene 0 65.19 43.01 152.44 88.68 38.81 84.03 33.80 98.35 75.76 108.78 68.67 16.04 14.98 102.60 136.14 95.19 70.89 131.66 53.83 76.87 83.36 48.79 50.20 2 380903 Transcript 0 0.00 1.28 0.23 0.00 0.00 0.87 0.00 0.00 1.11 1.50 7.93 0.00 0.00 2.50 2.85 11.94 11.19 5.92 4.70 2.20 11.06 2.97 2.74 3 400016 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 492092 Transcript 0 22.96 7.51 27.91 32.00 12.75 36.79 15.48 19.45 16.98 18.08 11.29 8.79 4.21 17.05 16.13 16.44 19.69 38.34 22.81 31.00 13.47 10.96 13.39 5 IG41 Intergenic 0 6.10 3.16 12.55 10.81 5.24 15.45 7.73 15.69 11.01 19.43 4.00 1.40 1.44 11.21 13.25 8.13 8.05 23.02 5.18 10.54 7.41 3.23 3.58 6 IG41_AR1 ActiveIntergenicRegion 0 6.80 3.52 13.93 12.04 5.74 17.11 8.62 17.49 12.27 21.55 4.46 1.56 1.60 12.39 14.64 9.06 8.97 25.66 5.77 11.75 8.26 3.60 3.98 7 ER1a ExonRegion 0 0.00 1.28 0.23 0.00 0.00 0.87 0.00 0.00 1.11 1.50 7.93 0.00 0.00 2.50 2.85 11.94 11.19 5.92 4.70 2.20 11.06 2.97 2.74 8 E1_Ab KnownBoundary 0 0.00 6.12 1.21 0.00 0.00 2.50 0.00 1.68 5.61 6.88 36.59 0.00 0.00 9.77 4.45 63.66 45.54 68.19 31.44 11.51 44.23 10.84 17.84 9 ER1b ExonRegion 0 1.72 3.08 6.36 1.64 2.33 11.26 3.05 8.82 7.67 11.83 24.79 1.56 1.83 23.86 21.97 27.59 22.83 37.02 20.53 10.62 27.34 7.91 13.96 10 E1_Da NovelBoundary 0 0.00 0.00 2.72 3.40 0.00 16.07 5.92 12.73 8.16 16.57 16.69 0.00 0.00 26.19 4.45 7.60 11.87 39.80 8.47 24.16 25.58 11.02 0.00 11 E1a_E2a KnownJunction 0 3.04 0.00 19.81 5.06 11.71 4.83 3.36 20.13 9.49 6.23 15.69 6.15 6.01 42.91 44.13 40.07 25.43 24.62 8.09 8.76 24.40 20.08 11.44 12 I1 Intron 0 17.37 30.41 41.54 37.97 21.59 44.09 23.55 36.39 34.31 48.66 16.34 19.53 16.69 34.98 30.86 27.09 24.73 59.60 33.07 44.94 23.12 19.57 20.14 13 I1_AR1 ActiveIntronRegion 0 20.99 35.52 30.92 27.09 27.51 47.51 28.01 34.94 37.72 55.04 19.06 29.24 25.82 45.04 36.88 29.44 27.25 65.47 41.52 55.69 23.75 21.62 21.26 14 I1_SR4 SilentIntronRegion 0 10.46 22.81 39.45 37.31 14.24 34.55 15.68 33.42 26.03 37.57 11.22 7.74 2.38 18.19 19.49 21.00 20.26 47.14 21.48 27.20 23.60 18.54 21.32 15 I1_AR4 ActiveIntronRegion 0 16.77 29.84 93.01 87.09 15.43 53.78 23.08 53.78 40.68 50.85 17.13 4.93 6.59 27.10 28.52 32.12 25.08 68.91 25.54 38.85 26.34 18.06 18.18 16 E2_Aa NovelBoundary 0 19.26 47.89 119.13 118.73 43.97 52.24 43.81 74.47 51.24 73.04 15.00 0.00 0.00 42.97 50.56 50.16 26.55 116.61 17.69 76.25 35.27 22.66 27.83 17 ER2a ExonRegion 0 40.97 64.22 139.27 124.71 56.17 113.67 47.75 94.17 96.63 125.50 74.69 26.49 7.30 138.02 157.36 116.01 91.22 176.18 90.86 94.70 90.46 64.64 59.08 18 E2_Ab KnownBoundary 0 31.93 62.75 233.20 130.05 72.24 127.82 54.06 85.02 115.16 127.92 43.70 6.30 7.79 186.36 173.93 193.28 73.77 219.79 124.24 113.71 113.30 82.30 35.68 19 ER2b ExonRegion 0 7.65 25.50 108.63 71.99 51.90 68.04 34.30 54.96 72.18 67.21 83.81 29.42 24.05 132.95 116.31 140.03 84.51 133.56 64.20 67.73 94.67 61.20 50.60 20 E2_Da NovelBoundary 0 58.97 125.04 150.50 158.35 89.56 238.44 68.85 138.09 113.71 135.49 65.02 24.31 59.74 120.20 103.71 118.00 58.44 228.08 44.33 134.29 79.51 63.19 74.44 21 E2a_E3a KnownJunction 0 0.00 0.00 3.16 2.06 0.00 0.00 0.00 0.00 0.00 0.00 4.95 0.00 0.00 4.71 0.00 0.00 4.21 4.68 3.76 0.00 2.47 2.45 0.00 22 E2a_E3b KnownJunction 0 0.00 0.00 21.02 15.82 12.73 22.15 10.47 9.20 8.65 18.08 53.80 17.56 0.00 55.80 73.80 50.67 56.01 36.06 36.61 10.93 60.85 24.37 31.07 23 I2 Intron 0 12.61 20.61 48.56 47.51 27.66 60.82 21.95 37.70 41.41 42.89 20.77 5.24 8.78 32.44 41.58 35.18 28.50 77.85 35.00 43.21 18.31 23.06 37.03 24 I2_AR1 ActiveIntronRegion 0 12.48 21.75 51.15 54.11 34.56 72.26 24.82 45.30 49.52 47.41 24.31 4.48 11.54 46.39 44.27 37.19 32.34 81.78 30.06 48.36 21.74 20.91 35.31 25 I2_SR1 SilentIntronRegion 0 8.29 8.52 28.61 42.11 16.65 50.86 17.35 37.23 34.18 34.03 23.31 8.07 5.58 24.86 31.29 46.65 38.52 89.67 40.57 51.87 13.10 25.02 35.14 26 I2_AR2 ActiveIntronRegion 0 14.86 24.36 57.87 49.00 28.02 54.28 20.51 35.83 41.16 46.45 20.13 5.03 7.69 26.93 43.74 35.27 27.63 81.14 38.64 40.36 19.81 25.46 40.01 27 I2_SR2 SilentIntronRegion 0 12.01 21.44 26.01 32.78 20.92 106.39 41.48 28.14 32.21 29.09 9.70 9.58 13.07 23.91 51.32 16.96 4.92 45.29 47.68 42.24 5.27 27.67 52.23 28 E3_Aa NovelBoundary 0 66.23 42.03 86.96 58.07 71.39 113.40 51.45 60.38 64.44 59.28 21.64 12.60 27.43 36.38 39.06 46.48 81.91 63.13 45.65 40.46 25.39 43.41 27.66 29 ER3a ExonRegion 0 45.92 15.02 52.67 61.94 25.50 73.58 30.96 38.91 33.95 36.16 17.63 17.58 8.42 29.40 32.27 32.88 35.16 71.99 41.86 62.01 24.47 19.47 26.79 30 E3_Ab KnownBoundary 0 103.13 33.55 115.79 123.79 39.13 139.98 59.88 78.41 67.71 69.41 14.64 36.31 11.85 31.31 28.43 52.38 37.77 131.74 58.73 70.24 38.12 18.00 76.06 31 ER3b ExonRegion 0 67.75 59.71 249.21 152.48 67.58 133.91 55.57 150.29 113.09 151.59 105.36 32.23 31.84 148.89 203.36 145.87 116.78 197.38 104.85 115.99 148.17 86.87 94.14 32 E3_Da NovelBoundary 0 10.00 0.00 43.17 44.88 44.23 67.86 13.03 65.47 29.46 52.81 19.58 0.00 6.82 17.01 29.67 25.04 25.71 50.32 13.84 17.83 9.95 14.08 22.02 33 E3a_E4a KnownJunction 0 66.53 57.75 237.51 107.15 75.47 142.93 40.50 115.62 90.88 110.51 73.97 29.86 6.82 98.18 135.48 68.19 100.05 114.99 42.17 92.87 104.77 35.27 82.72 34 I3 Intron 0 17.80 9.22 34.01 21.22 9.86 20.00 10.78 22.16 20.57 35.38 10.76 2.96 3.64 24.61 27.30 20.09 13.94 50.92 16.88 21.74 17.51 15.60 19.06 35 I3_AR1 ActiveIntronRegion 0 6.23 0.78 12.73 2.70 17.34 28.46 15.25 4.82 6.06 9.11 5.02 4.50 0.00 28.08 8.31 13.37 15.62 15.42 20.15 10.88 6.10 7.65 13.55 36 I3_SR1 SilentIntronRegion 0 18.32 7.33 20.60 9.03 11.50 13.56 6.24 10.81 11.40 20.88 7.71 2.04 5.06 18.42 24.82 13.76 13.99 30.46 13.23 12.47 9.10 14.75 13.59 37 I3_AR2 ActiveIntronRegion 0 15.34 10.17 11.03 4.09 0.00 9.17 3.31 10.15 3.71 26.09 3.87 0.00 0.00 12.38 18.86 17.83 12.79 58.44 15.93 24.73 2.20 19.01 7.34 38 I3_AR3 ActiveIntronRegion 0 9.17 4.33 12.00 7.20 3.91 8.79 4.01 13.21 7.70 27.56 2.73 0.00 1.44 14.53 21.20 12.27 14.30 53.02 14.21 26.73 3.79 18.48 11.82 39 I3_AR4 ActiveIntronRegion 0 11.95 7.84 30.55 16.22 9.02 22.82 10.74 21.25 25.43 36.15 11.08 1.25 3.38 20.63 23.57 17.50 12.10 58.55 14.84 18.97 20.33 12.93 20.98 40 I3_AR5 ActiveIntronRegion 0 22.46 4.58 32.68 24.76 13.16 23.58 10.00 20.07 26.66 43.17 11.01 7.34 1.30 28.78 26.59 20.64 22.01 62.77 10.09 24.41 23.87 15.05 17.70 41 I3_AR6 ActiveIntronRegion 0 19.78 6.87 28.01 20.82 11.72 20.17 14.02 17.70 14.82 33.77 14.06 10.90 9.38 37.58 13.11 12.81 17.19 50.14 24.71 18.64 19.07 14.58 16.61 42 I3_SR2 SilentIntronRegion 1 16.93 2.61 18.21 13.73 8.03 11.13 12.01 9.38 9.09 19.58 6.35 4.95 4.69 37.01 9.53 8.92 10.14 20.59 22.30 13.53 5.67 10.57 10.07 43 I3_AR7 ActiveIntronRegion 0 28.73 14.58 56.31 42.18 10.57 21.91 14.07 37.88 25.14 52.84 13.42 5.39 3.93 32.03 36.65 30.20 14.99 64.90 22.72 30.68 21.32 20.65 22.90 44 I3_SR3 SilentIntronRegion 0 19.05 14.45 40.71 26.59 4.80 15.62 12.10 21.39 18.90 26.44 15.84 2.36 2.56 34.76 46.91 28.60 16.08 30.45 16.51 37.91 25.16 20.16 20.06 45 E4_Aa NovelBoundary 0 23.26 33.74 86.25 45.35 30.98 24.70 14.93 47.93 25.49 45.18 22.16 0.00 7.79 31.02 59.58 24.69 13.56 122.54 12.71 55.29 26.75 9.06 16.05 46 ER4a ExonRegion 0 107.83 85.21 280.99 125.16 57.09 139.54 70.66 148.74 107.24 155.28 97.40 22.51 14.07 124.75 168.49 107.88 98.83 124.96 48.63 126.21 108.96 64.35 65.26 47 E4a_E5a KnownJunction 0 230.93 86.63 308.21 155.06 83.02 128.11 74.41 175.80 93.86 171.00 119.77 11.85 18.18 152.63 276.41 134.92 113.23 174.31 100.33 139.66 105.52 101.28 113.70 48 I4 Intron 0 3.38 4.55 12.26 11.69 2.14 8.50 4.23 6.18 6.18 12.84 1.24 0.69 2.47 7.47 9.11 10.93 8.97 25.39 11.71 12.93 7.40 4.66 10.33 49 I4_SR1 SilentIntronRegion 0 3.41 4.58 12.34 11.76 2.15 8.56 4.26 6.22 6.21 12.92 1.24 0.70 2.49 7.52 9.17 11.00 9.02 25.55 11.79 13.01 7.45 4.69 10.39 50 E5_Aa NovelBoundary 0 3.63 6.45 16.44 16.78 16.21 16.52 15.41 13.60 17.22 30.73 2.21 0.00 0.00 11.77 0.00 4.36 9.54 52.77 39.25 32.09 8.65 5.45 11.10 51 ER5a ExonRegion 0 129.35 64.58 285.90 141.54 60.52 117.08 56.36 141.45 125.33 172.26 88.70 16.25 16.86 171.20 203.70 142.21 104.34 208.13 64.19 119.73 123.00 70.21 74.06 52 E5_Da NovelBoundary 0 21.93 24.14 34.42 53.04 74.87 53.04 11.79 57.13 44.39 51.39 0.00 0.00 6.66 2.41 10.38 21.45 38.71 108.94 24.75 24.93 27.24 16.78 20.06 53 E5a_E6a KnownJunction 0 137.21 105.31 349.63 179.36 57.64 164.91 49.82 159.49 132.61 166.49 111.03 13.80 18.83 163.46 202.11 143.64 108.56 211.29 48.47 84.95 162.85 81.07 83.91 54 I5 Intron 0 17.08 9.30 20.35 29.59 35.55 43.35 15.70 27.59 17.62 27.35 6.63 4.44 7.04 17.97 13.35 14.65 13.20 34.38 18.43 20.52 9.91 9.38 12.59 55 I5_SR1 SilentIntronRegion 0 2.72 5.23 17.21 14.80 21.77 29.86 6.80 9.89 9.43 12.41 3.31 6.44 4.97 13.98 8.26 8.92 14.12 29.10 10.84 16.43 6.56 4.46 6.27 56 I5_AR2 ActiveIntronRegion 0 20.74 12.24 28.45 44.36 50.55 60.18 21.88 42.87 26.29 41.15 9.13 4.63 9.81 22.38 15.63 16.84 15.97 47.71 25.95 24.62 11.43 12.54 16.64 57 I5_SR3 SilentIntronRegion 0 20.10 5.01 1.29 1.43 6.59 9.67 6.52 0.00 0.65 1.83 2.72 2.78 1.36 10.30 12.37 14.61 5.83 3.25 4.46 14.22 9.30 5.12 7.23 58 E6_Aa NovelBoundary 0 13.85 15.72 24.66 27.40 0.00 27.94 10.02 68.02 30.67 61.30 7.37 0.00 20.13 10.01 0.00 15.64 21.88 68.61 4.80 19.49 11.06 3.06 11.44 59 ER6a ExonRegion 0 103.78 63.97 232.51 122.96 77.81 123.28 54.20 153.66 118.96 167.36 98.86 35.90 49.32 167.66 179.57 149.30 98.50 165.38 58.62 111.88 112.68 63.13 63.91 60 E6_Da NovelBoundary 0 3.78 11.25 29.74 43.92 0.00 29.36 8.48 105.64 56.28 74.00 17.16 33.46 41.56 33.79 43.02 40.16 21.51 117.69 49.32 35.28 14.58 7.90 52.84 61 E6a_E7a KnownJunction 1 155.29 61.24 257.09 154.83 79.54 156.50 51.63 171.32 118.26 198.13 104.55 12.60 8.28 132.32 195.93 219.69 57.69 225.38 84.43 84.56 121.08 73.36 64.11 62 I6 Intron 0 27.15 10.46 25.35 32.85 23.21 35.11 14.85 48.04 32.73 50.83 12.69 7.02 13.42 19.77 23.03 28.36 19.02 69.24 30.99 30.72 15.97 11.62 23.29 63 I6_SR1 SilentIntronRegion 0 7.79 5.15 6.10 21.63 25.79 19.16 6.62 27.54 15.27 17.67 9.09 10.59 16.07 12.89 10.93 21.06 15.24 29.52 39.38 18.02 6.89 5.90 15.31 64 I6_AR1 ActiveIntronRegion 0 29.41 11.74 29.26 37.10 25.85 37.38 16.34 55.75 37.46 58.75 13.29 8.18 15.39 21.26 24.62 30.98 20.90 80.09 33.60 33.16 17.45 13.19 25.41 65 I6_SR2 SilentIntronRegion 0 23.55 6.21 13.28 16.28 9.47 30.53 10.75 17.65 16.03 24.16 11.31 0.00 2.72 15.31 20.01 18.54 11.40 30.58 15.47 23.89 12.23 6.04 16.10 66 E7_Aa NovelBoundary 0 34.23 9.34 26.73 35.66 39.81 15.45 7.99 30.97 16.12 36.75 8.00 0.00 0.00 19.54 19.53 11.88 12.16 60.81 16.75 39.69 2.66 11.39 7.34 67 ER7a ExonRegion 0 116.54 67.81 221.47 137.97 55.70 123.95 41.67 146.20 98.71 172.97 95.14 21.14 13.24 139.07 194.37 140.95 79.49 166.69 64.61 106.15 105.33 70.44 69.83 68 E7_Da NovelBoundary 0 6.59 5.85 36.84 18.45 6.54 9.99 4.50 25.06 16.67 43.46 11.53 0.00 6.82 7.65 19.28 8.63 8.70 48.87 9.60 14.32 0.00 13.78 7.77 69 E7a_E8a KnownJunction 0 141.95 74.79 215.55 116.37 59.25 152.13 27.73 131.15 83.71 145.03 75.60 12.30 13.47 117.31 150.44 110.65 69.00 156.61 75.67 69.99 111.38 61.60 72.47 70 E8_Aa NovelBoundary 0 30.08 6.12 21.64 32.33 11.88 32.42 13.65 43.50 19.21 47.76 6.95 0.00 19.32 17.31 19.90 23.41 13.56 42.86 0.00 20.58 2.72 21.74 16.56 71 ER8a ExonRegion 0 132.10 73.86 217.91 133.06 48.59 148.54 46.91 158.86 110.83 165.11 95.92 15.83 19.33 138.29 211.13 122.33 87.27 205.09 63.46 105.11 121.19 66.85 63.33 72 E8_Da NovelBoundary 0 13.48 13.02 23.12 16.61 12.99 13.57 1.99 28.51 21.93 40.75 0.00 6.30 0.00 7.12 24.48 11.79 8.13 52.60 11.77 23.20 2.47 15.55 19.21 73 E8a_E9a KnownJunction 0 138.91 101.30 205.64 132.58 57.98 177.11 53.57 148.85 87.09 114.65 87.34 11.70 18.83 151.51 235.00 169.44 108.46 194.79 87.72 72.74 100.94 97.79 80.75 74 E9_Aa NovelBoundary 0 3.78 9.21 16.32 18.08 8.15 19.31 4.15 30.44 13.66 24.26 7.58 0.00 0.00 6.65 6.30 3.93 13.84 39.13 16.66 11.38 0.00 3.00 10.76 75 ER9a ExonRegion 0 60.49 47.26 153.40 89.38 40.19 99.91 32.98 119.87 82.88 124.93 78.21 10.61 18.03 112.97 221.06 94.57 80.38 141.27 52.84 93.28 91.23 53.47 61.65 76 E9_Da KnownBoundary 0 100.98 49.40 184.00 131.98 52.89 68.54 31.13 196.58 125.11 180.94 83.44 54.62 28.57 92.12 160.33 113.30 82.37 205.03 88.85 110.96 97.92 67.48 66.16 77 ER9b ExonRegion 0 58.10 30.00 123.13 84.28 20.72 50.74 17.10 113.78 73.92 111.93 57.28 14.69 12.08 70.15 123.78 72.96 59.19 130.90 57.54 64.57 61.47 45.21 36.86