Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAPK8IP2 Gene 0 11.71 92.17 227.27 203.54 60.72 234.62 75.40 204.55 220.53 274.98 0.35 0.18 0.44 1.88 1.67 1.03 0.64 333.37 267.73 209.42 1.53 1.07 0.90 2 399912 Transcript 0 0.00 1.75 2.52 0.34 2.38 23.08 4.56 5.28 2.95 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.95 19.38 7.15 0.00 0.00 0.00 3 442429 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 341339 Transcript 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 5 329492 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 434747 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 445746 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8876 Transcript 0 0.30 2.59 5.50 4.73 3.08 6.72 3.32 3.48 1.15 8.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.23 2.99 8.43 0.00 0.00 0.00 9 399908 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.00 1.47 1.36 0.00 2.08 36.98 7.13 1.06 0.96 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.91 27.61 4.73 0.00 0.00 0.00 11 ER1b ExonRegion 0 3.08 11.85 17.16 12.23 41.51 146.95 43.87 15.67 16.59 34.47 0.00 0.00 0.00 0.62 0.32 1.30 0.00 70.75 116.58 37.77 0.87 0.00 0.00 12 E1_Ac KnownBoundary 0 3.33 62.95 97.25 81.87 81.07 325.49 99.45 82.60 107.15 106.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 246.40 451.97 197.38 0.00 0.00 0.00 13 ER1c ExonRegion 0 7.87 72.10 139.29 159.39 72.12 344.10 102.32 217.54 241.74 278.59 0.00 0.00 0.00 2.06 1.04 0.05 4.80 435.92 812.32 263.93 0.17 0.00 0.00 14 E1a_E2a KnownJunction 0 0.00 8.16 144.20 162.58 21.31 101.42 39.88 231.16 253.67 335.51 0.00 0.00 0.00 0.00 0.00 0.00 3.65 326.36 381.94 114.54 0.00 0.00 0.00 15 ER2a ExonRegion 0 3.05 17.59 119.00 104.83 18.00 74.11 20.60 162.90 192.93 256.88 0.00 0.00 0.00 1.39 0.00 1.40 0.28 231.11 203.29 179.28 0.00 1.00 1.41 16 E2a_E3b KnownJunction 0 3.11 17.89 204.22 122.33 14.69 78.48 16.83 252.81 289.18 379.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 167.14 200.95 306.16 0.00 0.00 0.00 17 ER3a ExonRegion 0 0.00 1.27 3.74 3.43 0.18 3.45 5.31 4.29 7.29 6.02 0.00 0.00 0.00 0.02 0.00 0.00 0.00 10.62 8.93 6.59 0.00 1.17 0.00 18 E3_Ab KnownBoundary 0 0.00 0.00 9.11 9.69 0.00 7.04 1.68 4.44 13.45 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 9.60 11.89 0.00 0.00 0.00 19 ER3b ExonRegion 0 1.96 25.92 192.93 198.42 75.92 261.39 64.73 240.98 249.28 303.86 1.19 0.00 0.00 3.23 5.56 0.68 0.00 343.84 499.26 262.24 0.00 1.28 0.00 20 E3_Da KnownBoundary 0 3.78 39.99 185.53 179.13 164.86 569.39 135.45 196.29 176.79 215.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 388.13 438.22 249.85 0.00 0.00 0.00 21 E3a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3_Db KnownBoundary 0 0.00 43.15 22.62 17.78 44.40 77.00 34.27 22.26 36.11 23.34 0.00 0.00 0.00 0.00 0.00 4.36 0.00 58.57 142.59 107.76 0.00 0.00 0.00 23 E3b_E5e KnownJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 24 ER3c ExonRegion 0 2.12 43.04 147.66 151.05 131.33 402.52 103.71 169.10 173.12 192.11 0.00 0.00 0.00 0.54 0.00 2.97 0.00 376.17 395.78 240.60 0.00 0.00 0.00 25 ER3d ExonRegion 0 5.27 48.14 114.89 98.16 37.53 212.70 65.40 105.65 143.89 188.10 0.43 0.00 0.00 2.34 1.45 0.33 0.00 225.51 217.40 154.40 0.62 1.77 0.83 26 E3c_E4a KnownJunction 0 6.30 61.50 183.02 159.79 35.82 134.98 49.59 188.28 225.87 258.14 2.21 0.00 0.00 0.00 4.45 0.00 0.00 350.90 211.86 194.82 0.00 0.00 0.00 27 E3c_E5c KnownJunction 0 0.00 0.00 2.31 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 3.76 0.00 0.00 0.00 0.00 28 ER4a ExonRegion 0 7.70 39.55 173.96 118.17 23.94 122.36 41.79 138.11 192.51 236.35 0.23 0.00 0.00 3.35 1.94 0.00 0.00 324.10 284.72 167.00 0.05 2.22 1.59 29 E4a_E5a KnownJunction 0 13.63 48.35 109.04 84.94 30.98 123.45 8.21 130.33 118.69 196.68 0.00 0.00 0.00 4.94 4.45 0.00 0.00 275.37 201.42 144.39 0.00 5.63 0.00 30 ER5a ExonRegion 0 2.13 23.88 127.40 54.46 18.84 118.37 30.51 76.96 93.31 157.41 0.00 0.00 0.00 2.28 1.19 0.00 0.00 182.03 148.50 122.90 1.70 0.46 0.00 31 E5_Da KnownBoundary 0 0.00 3.29 44.94 19.64 4.24 15.45 0.00 26.99 11.40 36.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.42 21.46 27.42 0.00 0.00 0.00 32 E5a_E5b KnownJunction 0 0.00 15.66 107.33 37.89 4.07 62.12 8.44 68.31 67.27 102.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.51 40.57 58.04 2.97 0.00 0.00 33 E5_Ab KnownBoundary 0 0.00 9.27 49.11 19.74 3.65 36.80 2.12 21.19 37.82 64.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.32 9.32 30.74 2.59 0.00 0.00 34 ER5b ExonRegion 0 0.00 18.98 113.14 39.98 8.03 119.81 19.86 62.22 67.11 142.60 0.00 0.00 0.00 2.71 0.00 0.00 0.00 93.62 77.51 104.25 4.41 0.00 0.00 35 ER5c ExonRegion 0 4.21 27.85 150.10 67.53 18.82 117.49 28.52 93.14 117.38 208.87 0.00 0.00 0.00 1.84 0.00 0.00 0.00 246.33 139.26 131.84 3.12 0.63 1.68 36 E5_Db KnownBoundary 0 3.70 21.97 175.87 105.25 21.99 148.61 27.69 137.89 173.78 259.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 391.32 175.63 150.84 8.96 3.12 0.00 37 E5b_E5f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5d ExonRegion 0 1.98 11.23 101.86 46.87 6.78 78.84 16.02 67.81 95.18 160.94 0.00 0.93 0.00 1.07 0.81 0.00 0.00 262.56 141.45 115.70 3.16 0.52 0.50 39 E5_Ac KnownBoundary 0 0.00 17.50 42.49 20.91 3.40 55.76 15.02 46.37 44.85 76.56 0.00 6.30 0.00 0.00 0.00 0.00 0.00 149.98 57.88 58.04 2.35 0.00 0.00 40 ER5e ExonRegion 0 0.00 11.47 12.69 4.71 7.57 48.71 10.24 15.93 20.44 37.92 0.00 1.29 0.00 0.74 0.00 0.00 0.00 66.37 42.75 37.40 0.31 0.00 0.00 41 E5_Dc KnownBoundary 0 0.00 11.91 3.16 2.93 4.33 48.44 9.98 18.98 20.40 18.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.01 56.85 24.22 0.00 0.00 0.00 42 E5c_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5f ExonRegion 0 2.26 8.70 13.67 6.06 4.30 46.40 11.51 14.60 19.10 27.31 0.00 0.00 0.00 0.28 1.26 0.00 0.00 85.77 77.83 37.35 0.00 0.00 1.74 44 E5_Ad KnownBoundary 0 9.71 40.19 48.14 28.77 3.90 117.94 37.67 61.04 58.39 88.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 262.28 145.89 76.64 0.00 0.00 0.00 45 ER5g ExonRegion 0 6.33 26.03 70.33 35.61 11.64 84.56 23.87 62.09 67.39 95.60 0.00 0.00 0.00 1.20 0.10 0.00 0.00 171.84 103.75 83.07 0.00 0.00 1.03 46 E5_Ae KnownBoundary 0 13.93 43.41 101.71 68.26 19.95 145.71 22.04 103.51 102.11 150.13 0.00 0.00 0.00 7.42 0.00 0.00 0.00 237.11 145.89 108.47 0.00 0.00 4.35 47 ER5h ExonRegion 0 4.57 54.91 177.53 126.38 28.25 155.96 48.85 161.90 182.38 258.19 0.66 0.00 0.00 3.10 1.32 1.68 2.30 298.70 171.12 198.41 1.04 1.06 0.74 48 E5_Af KnownBoundary 0 20.23 158.66 494.34 409.01 104.33 417.37 98.09 391.81 448.72 495.20 0.00 0.00 0.00 2.47 5.19 3.85 0.00 605.30 394.65 366.76 8.28 0.00 0.00 49 ER5i ExonRegion 0 22.09 139.10 465.28 404.87 101.07 432.42 142.04 384.96 482.19 547.50 0.00 0.00 2.39 1.34 5.65 6.93 2.66 745.26 488.76 455.02 4.06 0.00 0.00 50 E5d_E6a KnownJunction 0 44.67 120.90 505.39 494.84 64.01 532.93 200.37 441.71 538.77 611.51 0.00 0.00 12.82 2.47 6.30 3.16 0.00 812.57 577.24 554.35 2.72 3.06 0.00 51 ER6a ExonRegion 0 23.73 106.12 428.95 422.66 75.73 402.32 141.86 385.65 498.54 573.90 1.93 0.00 6.40 1.87 3.87 3.51 0.00 713.23 423.56 481.17 4.47 0.32 0.00 52 E6_Ab KnownBoundary 0 20.37 118.20 469.74 467.61 118.93 394.38 142.73 401.50 509.95 601.63 2.63 0.00 7.95 2.47 4.45 4.02 0.00 673.58 311.07 438.34 7.78 0.00 0.00 53 ER6b ExonRegion 0 19.44 101.82 404.94 370.77 78.28 309.02 86.89 340.51 466.27 548.62 0.81 0.00 2.07 0.94 1.15 1.04 0.00 638.12 330.24 409.80 6.66 3.39 2.32 54 E6a_E7a KnownJunction 0 22.23 131.69 461.25 391.03 90.58 331.51 82.05 357.84 483.39 568.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 667.44 406.98 426.58 5.44 3.12 8.28 55 ER7a ExonRegion 0 16.86 176.30 517.26 448.85 103.55 475.79 123.58 380.46 475.80 520.69 1.08 0.00 0.00 2.62 3.44 2.63 0.00 752.59 436.38 456.90 3.86 1.82 1.15 56 E7a_E8a KnownJunction 0 7.19 203.45 506.61 418.86 223.34 714.82 178.51 384.12 453.84 536.08 4.84 0.00 0.00 2.35 4.45 0.00 0.00 772.65 326.97 460.40 3.03 5.45 0.00 57 ER8a ExonRegion 0 11.70 146.27 549.65 501.02 114.91 437.59 127.33 429.77 480.73 532.14 0.98 0.00 5.37 3.65 2.93 2.13 0.69 869.45 555.30 430.69 2.40 3.35 4.54 58 E8a_E9a KnownJunction 0 35.04 224.70 713.25 804.46 108.15 470.30 106.26 628.52 631.47 715.20 0.00 0.00 0.00 9.59 6.30 13.07 4.68 1005.45 1129.63 547.71 0.00 6.18 7.60 59 E9_Aa NovelBoundary 0 0.00 3.35 37.99 65.33 7.81 24.59 12.06 31.71 20.14 19.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.20 20.89 29.40 0.00 0.00 0.00 60 ER9a ExonRegion 0 17.64 108.83 505.79 452.59 68.83 379.78 104.67 461.16 434.85 564.20 0.91 0.00 0.00 2.66 1.45 3.44 0.86 668.34 492.58 423.93 0.71 2.76 2.18 61 E9a_E10a KnownJunction 0 22.23 107.09 470.36 436.01 100.08 452.13 127.01 409.43 450.28 574.31 0.00 0.00 0.00 0.00 0.00 0.00 4.02 726.68 296.48 345.15 2.90 2.82 0.00 62 ER10a ExonRegion 0 38.81 197.74 554.99 479.74 123.80 554.09 155.35 504.22 491.37 601.64 1.31 0.00 1.92 3.39 1.68 0.00 2.37 655.61 600.73 381.84 1.68 2.38 3.10 63 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E10a_E13a KnownJunction 0 84.16 350.79 596.31 549.71 219.52 858.14 252.30 624.20 513.13 625.27 0.00 0.00 12.50 12.07 0.00 7.01 0.00 875.45 1028.36 513.70 2.72 2.51 4.27 65 E11_Aa NovelBoundary 0 3.78 49.53 42.16 54.57 3.23 48.84 25.88 39.35 36.69 60.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86.80 18.07 52.60 0.00 0.00 0.00 66 ER11a ExonRegion 0 0.99 8.56 13.37 14.20 18.78 25.72 13.62 9.63 4.32 23.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.60 8.97 32.79 0.00 0.00 0.00 67 E11_Da NovelBoundary 0 3.56 20.52 58.04 71.35 8.66 23.34 10.07 50.64 17.48 71.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.00 21.65 57.46 0.00 0.00 0.00 68 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E12_Aa NovelBoundary 0 2.89 18.94 68.80 86.10 23.26 50.88 11.13 66.13 21.61 92.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.73 9.13 72.61 2.84 0.00 0.00 70 ER12a ExonRegion 0 1.10 9.59 22.79 18.91 2.81 19.14 9.65 14.74 3.74 26.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.17 8.22 20.00 0.00 0.00 0.00 71 E12_Da NovelBoundary 0 0.00 12.23 67.56 129.19 31.15 28.73 19.25 88.80 24.45 96.33 0.00 0.00 0.00 0.00 0.00 4.36 0.00 97.42 49.22 31.45 0.00 0.00 0.00 72 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 0.00 6.20 0.00 0.00 0.00 73 I12 Intron 0 2.20 13.23 37.06 57.58 18.10 40.56 14.81 30.13 20.59 45.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.91 17.37 32.11 0.00 0.00 0.00 74 I12_SR1 SilentIntronRegion 0 2.23 13.37 37.44 58.17 18.29 40.97 14.96 30.44 20.81 45.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.30 17.55 32.44 0.00 0.00 0.00 75 E13_Aa NovelBoundary 0 6.74 49.00 64.69 107.75 16.47 52.87 14.35 43.70 40.07 73.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.13 36.52 40.91 0.00 0.00 0.00 76 ER13a ExonRegion 0 27.60 184.03 306.52 267.37 98.52 374.98 139.07 272.05 283.50 344.77 0.27 1.57 2.61 2.00 0.23 0.00 0.00 342.23 338.16 286.22 2.58 1.85 2.46 77 E13a_E14a KnownJunction 0 22.60 194.11 387.63 407.41 151.10 423.62 131.56 379.73 362.35 415.55 2.21 0.00 0.00 2.12 4.45 0.00 0.00 449.19 293.09 311.79 0.00 0.00 0.00 78 ER14a ExonRegion 0 32.59 188.84 405.85 361.52 130.53 477.74 156.23 319.34 388.05 437.11 1.06 0.00 0.00 0.42 2.54 0.00 1.67 594.57 352.18 334.62 5.04 2.28 0.00 79 E14_Da KnownBoundary 0 61.71 235.22 420.56 412.80 163.07 592.56 165.70 366.54 443.60 471.16 0.00 0.00 0.00 0.00 0.00 3.25 4.21 689.37 393.14 416.23 5.68 5.63 0.00 80 ER14b ExonRegion 0 25.16 210.47 330.95 361.56 125.21 357.98 137.11 338.15 314.47 369.73 0.26 0.20 0.26 2.08 2.87 1.58 0.94 361.98 356.09 253.44 1.27 1.02 0.78 81 ER14c ExonRegion 0 0.00 4.07 6.13 1.36 2.68 14.67 2.65 12.10 6.18 5.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.74 10.64 0.00 0.00 0.00 82 ER14d ExonRegion 0 0.00 2.03 3.68 0.68 2.68 9.17 1.99 9.51 4.94 4.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 9.57 0.00 0.00 0.00 83 IG5 Intergenic 0 9.37 27.26 83.82 50.28 55.55 81.19 31.84 157.94 93.37 82.92 1.41 1.00 0.53 2.38 3.35 8.01 2.20 68.42 38.58 58.15 6.75 3.63 12.28 84 IG5_SR1 SilentIntergenicRegion 0 1.88 6.78 7.90 3.94 0.00 16.30 7.94 13.83 14.68 9.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.27 1.06 9.46 0.00 0.00 0.00 85 IG5_AR1 ActiveIntergenicRegion 0 14.33 66.43 195.81 116.48 115.59 165.00 71.39 370.43 219.91 196.38 0.00 0.00 0.28 0.41 0.07 0.38 0.00 159.26 88.25 138.21 0.00 0.27 0.15 86 IG5_AR4 ActiveIntergenicRegion 0 20.00 1.91 24.55 16.43 14.50 24.07 4.81 39.21 22.15 17.77 6.91 7.11 1.39 6.65 12.64 9.15 6.75 14.07 4.07 12.73 25.40 10.29 18.18 87 IG5_SR6 SilentIntergenicRegion 0 12.90 2.96 30.96 20.72 92.16 152.07 32.80 59.71 29.99 26.04 6.15 0.94 2.67 16.55 19.71 84.65 16.62 36.85 35.44 11.56 43.75 25.12 122.93