Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 APOBEC3D Gene 0 94.21 4.25 11.08 13.30 26.83 14.41 11.26 13.92 16.79 6.56 74.65 52.06 90.80 139.83 173.54 131.93 88.47 3.54 7.55 6.33 12.18 11.85 19.53 2 427494 Transcript 0 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.38 0.00 2.08 4.45 0.12 1.36 1.23 0.00 0.00 0.00 0.00 0.00 0.00 3 381568 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 216099 Transcript 0 59.01 1.01 6.04 10.20 18.11 5.54 6.49 10.15 11.46 3.04 70.92 43.08 70.89 110.04 120.72 106.63 70.57 0.00 2.01 0.67 5.12 8.27 7.09 5 ER1a ExonRegion 0 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 2.76 0.00 4.15 8.91 0.25 2.72 2.45 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 I1_SR1 SilentIntronRegion 1 241.85 2.02 9.68 5.38 104.56 12.75 39.04 5.12 2.44 1.70 288.69 232.50 328.15 679.94 655.95 410.44 242.68 0.91 40.09 7.05 124.68 114.54 78.77 8 ER2a ExonRegion 0 74.22 13.77 12.19 15.21 35.83 24.04 23.28 14.30 19.74 11.57 55.08 38.14 59.67 93.34 144.60 98.06 81.75 13.57 21.07 22.65 15.87 14.75 29.39 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 75.92 0.42 11.43 14.95 19.04 11.76 5.95 15.83 16.04 5.20 78.04 64.40 92.12 156.74 171.02 112.11 111.00 0.00 4.82 1.44 12.49 12.37 21.83 11 E3_Da NovelBoundary 1 31.26 0.00 1.80 8.79 30.39 8.52 4.46 5.09 4.77 3.33 11.69 18.76 55.03 45.62 49.94 58.87 29.17 0.00 0.00 0.00 3.15 7.10 0.00 12 E3a_E4a KnownJunction 1 25.04 0.00 1.21 5.76 7.39 2.16 2.03 6.74 1.56 6.50 41.54 71.57 74.83 84.64 99.88 75.88 72.93 0.00 4.24 0.00 3.15 7.84 4.35 13 E3a_E5a NovelJunction 0 0.00 0.00 3.99 0.00 0.00 0.00 0.00 2.26 1.77 1.67 14.27 0.00 13.31 9.48 8.90 7.78 13.09 0.00 0.00 0.00 0.00 0.00 0.00 14 E3a_E6a NovelJunction 0 23.86 0.00 1.21 7.36 4.33 8.06 6.23 0.00 5.90 2.36 2.32 0.00 18.99 14.13 0.00 27.26 4.77 0.00 0.00 0.00 0.00 0.00 3.24 15 E3a_E7a KnownJunction 0 2.82 0.00 4.73 2.03 7.81 5.17 0.00 6.57 2.40 0.00 18.27 19.81 0.00 17.01 8.90 12.05 9.16 0.00 0.00 0.00 2.41 3.06 0.00 16 I3 Intron 0 24.93 0.12 1.66 2.47 4.39 1.45 3.22 1.88 2.79 1.76 14.32 14.63 23.25 32.61 42.93 33.56 14.63 0.17 1.35 1.16 3.08 2.02 3.92 17 I3_AR1 ActiveIntronRegion 0 56.07 0.34 3.63 5.04 9.30 2.43 7.23 3.84 6.10 3.40 22.72 23.32 39.38 56.40 68.27 57.58 24.05 0.46 2.64 2.47 4.38 3.10 6.32 18 ER4a ExonRegion 0 39.79 1.11 4.27 4.41 15.77 4.69 4.20 9.32 5.73 3.82 61.76 45.97 80.08 123.08 118.03 76.13 65.20 0.00 2.48 1.16 5.21 7.34 6.99 19 E4_Da NovelBoundary 0 42.45 0.00 0.00 1.50 24.11 11.36 3.53 0.00 8.25 1.05 24.01 12.45 33.44 56.27 41.54 43.32 48.90 0.00 0.00 0.00 5.31 0.00 8.02 20 E4a_E5a KnownJunction 1 56.16 0.00 4.88 12.75 15.37 0.00 2.08 10.10 2.49 0.00 109.29 12.60 67.37 116.19 123.74 91.77 69.00 0.00 0.00 0.00 3.15 14.21 4.35 21 I4 Intron 0 20.34 0.00 1.35 2.00 7.25 0.90 2.28 3.81 5.44 2.53 17.62 4.58 16.25 33.92 45.50 47.60 23.58 0.00 1.57 0.00 0.54 1.03 5.06 22 I4_AR1 ActiveIntronRegion 1 20.53 0.00 1.36 2.02 7.32 0.91 2.31 3.84 5.49 2.55 17.78 4.63 16.40 34.25 45.92 48.06 23.81 0.00 1.57 0.00 0.55 1.04 5.11 23 E5_Aa NovelBoundary 0 51.94 0.00 3.22 8.89 18.25 4.66 7.77 9.20 6.80 7.23 31.64 37.51 46.43 60.69 85.17 95.62 32.16 0.00 0.00 0.00 11.37 5.02 0.00 24 ER5a ExonRegion 0 64.07 1.31 6.18 9.35 23.99 6.47 8.42 14.35 14.60 7.09 115.52 73.94 99.06 159.52 169.74 172.93 105.05 0.00 1.94 0.00 5.84 8.68 11.29 25 E5a_E6a KnownJunction 0 102.02 3.35 10.50 8.46 43.72 10.16 18.90 17.87 16.17 3.73 107.29 45.76 100.81 166.11 228.94 195.76 106.78 0.00 4.71 0.00 8.34 8.70 11.01 26 I5 Intron 0 13.48 0.13 2.66 3.31 5.66 2.06 3.06 3.40 2.92 1.58 8.22 6.64 12.56 22.29 28.83 29.01 15.56 0.24 1.12 0.70 2.62 1.61 3.88 27 I5_SR1 SilentIntronRegion 0 13.51 0.13 2.66 3.32 5.67 2.07 3.07 3.41 2.93 1.59 8.24 6.66 12.60 22.35 28.90 29.08 15.60 0.24 1.13 0.70 2.63 1.61 3.89 28 E6_Aa NovelBoundary 0 156.25 0.00 9.34 6.03 12.99 0.00 12.54 8.26 7.18 0.00 18.74 30.46 13.31 53.51 85.79 72.63 22.44 0.00 0.00 0.00 3.15 0.00 7.77 29 ER6a ExonRegion 0 100.03 2.34 11.58 20.99 26.47 16.19 12.17 15.38 26.64 3.13 101.40 69.24 124.03 189.12 191.02 158.83 107.16 0.00 2.72 1.15 12.28 13.48 15.24 30 E6a_E7a KnownJunction 0 80.76 0.00 9.70 17.18 12.22 2.78 4.15 7.48 24.51 0.00 30.53 25.51 20.94 41.67 31.52 81.77 38.43 0.00 0.00 3.07 2.97 5.94 3.50 31 ER7a ExonRegion 0 136.24 1.11 13.28 13.74 23.53 12.68 11.93 14.24 19.91 5.69 79.12 48.32 114.14 185.46 203.98 150.69 91.02 1.50 0.32 1.53 12.59 14.02 17.23 32 E7a_E8a KnownJunction 0 97.13 0.00 21.88 17.15 49.15 18.63 21.51 31.63 43.60 10.53 188.31 65.42 192.52 233.09 295.57 227.89 182.14 0.00 4.80 5.37 16.80 10.84 24.07 33 ER8a ExonRegion 0 78.47 0.55 19.81 19.80 43.22 22.64 13.05 28.76 33.78 15.42 163.68 95.36 182.79 259.98 350.39 289.87 171.67 2.76 3.32 2.40 22.39 20.26 27.34 34 E8_Da KnownBoundary 0 54.38 3.29 26.82 22.87 46.18 12.72 8.79 19.47 44.70 23.21 189.36 94.53 175.48 213.02 221.77 271.13 218.70 11.28 0.00 8.50 42.26 21.62 23.39 35 ER8b ExonRegion 0 119.08 3.93 11.72 13.50 28.02 14.20 9.21 12.98 15.07 5.29 67.27 49.68 85.89 127.82 176.38 137.79 80.62 2.66 8.00 5.32 12.33 10.62 20.53 36 ER8c ExonRegion 0 4.23 0.00 0.00 2.73 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 IG35_SR1 SilentIntergenicRegion 0 4.82 0.00 0.83 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.88 31.54 51.00 43.49 14.89 1.35 0.00 0.00 0.00 0.00 2.01 0.00 0.00