Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP3-508I15.2 Gene 0 9.07 3.73 4.29 4.56 5.19 5.80 4.05 3.94 3.00 3.84 3.15 1.09 1.58 4.06 7.78 4.85 4.71 8.16 2.92 4.77 1.57 1.06 4.79 2 416406 Transcript 0 4.51 1.86 2.14 2.27 2.58 2.89 2.02 1.96 1.49 1.91 1.57 0.54 0.78 2.02 3.88 2.41 2.35 4.06 1.45 2.38 0.79 0.53 2.39 3 ER1a ExonRegion 0 0.00 0.00 0.04 0.00 0.00 0.02 0.02 0.02 0.00 0.01 0.02 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.03 0.01 0.00 0.04 4 E1_Da NovelBoundary 0 46.38 9.01 41.34 24.84 6.62 8.57 19.43 21.15 18.14 40.53 52.70 18.16 0.00 60.92 95.93 96.04 47.78 76.07 27.20 20.07 8.03 11.08 48.32 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 Ix Intron 0 4.64 1.12 3.00 3.34 10.27 5.03 6.53 2.83 3.03 6.56 14.84 11.17 18.76 39.82 52.97 27.71 10.86 10.09 6.99 11.67 3.63 5.71 12.88 7 Ix_AR1 ActiveIntronRegion 0 4.74 1.14 3.07 3.40 10.50 5.12 6.68 2.87 3.09 6.68 15.12 11.42 19.12 40.69 54.14 28.32 11.10 10.31 7.14 11.90 3.71 5.84 13.17 8 Ix Intron 0 21.59 2.46 32.83 17.91 18.50 6.02 18.77 21.82 14.00 21.87 28.07 6.43 11.40 68.69 68.74 70.90 50.79 45.59 19.82 27.23 11.43 15.85 21.83 9 Ix_AR1 ActiveIntronRegion 0 21.73 2.48 33.05 18.02 18.63 6.06 18.89 21.97 14.10 22.01 28.26 6.47 11.48 69.13 69.18 71.36 51.12 45.90 19.96 27.41 11.51 15.96 21.98 10 Ix Intron 0 42.78 5.46 48.73 20.84 29.57 12.44 18.61 27.25 18.60 33.73 33.88 16.49 24.97 90.57 97.52 115.48 69.85 74.13 28.67 25.20 18.44 26.98 26.89 11 Ix_AR1 ActiveIntronRegion 0 43.05 5.49 49.02 20.97 29.75 12.52 18.72 27.42 18.72 33.94 34.09 16.59 25.13 91.12 98.10 116.20 70.29 74.59 28.85 25.35 18.56 27.14 27.06 12 Ix Intron 0 60.92 7.49 67.90 28.76 48.05 10.77 21.80 24.32 15.47 27.94 34.94 29.52 33.29 89.92 92.44 124.89 66.88 65.36 27.50 19.82 13.70 28.30 34.48 13 Ix_SR1 SilentIntronRegion 0 61.20 7.53 68.21 28.89 48.27 10.82 21.89 24.42 15.54 28.07 35.09 29.66 33.44 90.33 92.86 125.44 67.17 65.65 27.63 19.91 13.76 28.43 34.63 14 Ix Intron 1 88.89 12.67 29.07 19.22 24.08 2.96 13.44 14.27 4.25 8.68 12.94 25.04 27.06 37.52 64.39 64.47 31.23 18.03 24.26 14.73 2.54 16.83 15.59 15 Ix_AR1 ActiveIntronRegion 0 148.17 20.58 50.99 33.70 38.99 5.20 22.51 25.01 7.45 15.22 18.78 42.47 45.52 57.81 91.99 104.57 48.10 31.60 41.26 24.96 2.68 26.95 24.94 16 Ix Intron 0 51.74 14.41 28.75 25.51 36.85 7.07 21.38 19.98 14.12 20.62 17.34 19.71 19.15 37.18 57.10 42.53 30.80 25.22 8.00 17.75 6.13 14.39 12.51 17 Ix_AR1 ActiveIntronRegion 0 67.46 18.14 41.20 35.86 42.99 7.82 24.40 27.75 18.96 29.40 25.97 23.86 22.63 52.79 83.91 59.23 45.05 36.88 10.25 23.64 8.88 17.85 16.86 18 Ix_SR1 SilentIntronRegion 0 25.95 8.30 8.30 8.51 26.81 5.85 16.45 7.23 6.17 6.20 3.14 12.90 13.46 11.54 13.03 15.10 7.37 6.06 4.31 8.09 1.61 8.72 5.38 19 Ix Intron 0 28.17 9.16 14.59 21.63 20.28 3.76 10.58 14.24 10.93 18.20 5.15 10.54 17.12 11.33 21.64 27.39 15.55 26.53 5.22 14.38 4.96 3.84 13.83 20 Ix_SR1 SilentIntronRegion 0 28.75 9.29 14.87 22.07 20.63 3.83 10.79 14.54 11.13 18.57 5.25 10.75 17.47 11.56 22.02 27.96 15.86 27.07 5.33 14.63 5.07 3.92 14.07 21 Ix Intron 0 29.17 14.82 19.20 20.75 38.08 22.80 24.07 21.96 19.08 18.42 16.41 11.06 19.92 22.79 23.57 37.73 28.39 43.27 7.42 23.57 5.96 9.78 10.48 22 Ix_SR1 SilentIntronRegion 0 29.57 15.01 19.58 21.07 38.72 23.04 24.39 22.29 19.43 18.76 16.71 11.28 20.17 23.11 23.89 37.90 28.91 43.69 7.45 23.86 6.08 9.94 10.57 23 E2_Aa NovelBoundary 0 10.89 0.00 10.47 7.59 7.30 0.00 3.89 14.50 10.62 9.59 4.47 5.70 0.00 7.71 8.90 4.10 7.20 36.64 3.86 16.68 2.59 0.00 0.00 24 ER2a ExonRegion 0 13.53 5.57 6.38 6.80 7.74 8.64 6.03 5.87 4.48 5.72 4.70 1.63 2.35 6.06 11.58 7.24 7.04 12.17 4.36 7.11 2.34 1.59 7.14