Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYP2D7P1 Gene 0 9.56 7.36 18.66 26.84 4.43 17.34 4.16 21.92 13.57 19.28 9.69 1.01 1.38 5.33 7.75 6.54 5.31 20.43 21.69 10.16 7.81 5.52 10.14 2 433992 Transcript 0 8.39 3.14 7.81 12.06 2.86 8.10 1.64 9.19 7.20 7.85 2.17 0.00 0.05 5.06 7.15 3.77 3.85 11.27 16.22 9.96 3.95 8.39 7.00 3 436260 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 354609 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 435688 Transcript 0 0.59 0.00 0.84 0.26 0.00 0.00 0.54 1.05 1.43 2.20 1.30 0.00 0.00 0.00 1.69 0.00 0.00 5.54 5.99 0.17 0.00 0.00 0.00 6 358097 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 428297 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 424775 Transcript 0 3.42 0.54 1.04 4.95 1.39 2.33 0.81 1.49 2.38 2.41 2.35 0.00 0.00 0.00 0.00 1.31 0.00 3.37 3.19 4.11 0.80 0.82 1.14 9 381321 Transcript 0 0.00 0.00 0.48 0.38 0.00 0.56 0.00 0.47 0.00 0.03 0.00 0.00 0.00 0.00 1.02 0.31 0.00 0.00 0.46 0.31 0.00 0.00 0.19 10 435101 Transcript 0 10.74 0.00 7.33 2.06 0.00 2.90 0.00 2.34 7.96 0.00 7.21 0.00 6.82 0.00 5.44 0.00 0.00 11.77 4.42 3.07 0.00 0.00 0.00 11 IG38_AR1 ActiveIntergenicRegion 0 5.08 2.97 8.80 17.70 6.65 13.65 5.26 13.30 10.17 9.37 7.04 1.12 1.64 2.97 5.54 4.80 8.38 11.82 21.87 9.01 5.27 2.61 9.93 12 ER1a ExonRegion 0 0.00 0.00 2.12 1.36 0.00 0.00 0.00 1.65 0.67 1.62 0.44 0.00 0.00 0.37 4.88 0.00 1.95 0.92 0.14 4.84 2.50 2.08 0.00 13 ER1b ExonRegion 0 0.00 0.00 2.45 2.73 0.00 0.00 0.00 1.73 4.20 3.44 1.93 0.00 0.00 1.62 5.80 0.00 3.96 3.70 3.82 8.51 6.61 2.08 0.00 14 ER1c ExonRegion 0 2.47 4.64 9.49 27.59 3.75 16.31 4.05 14.23 15.66 13.30 6.50 0.00 0.00 5.83 10.72 3.25 9.16 20.48 18.21 8.91 18.46 2.50 6.15 15 E1_Ad KnownBoundary 0 21.19 25.26 42.72 63.36 8.32 46.11 25.26 39.39 52.75 40.51 13.95 0.00 0.00 11.71 18.91 11.28 0.00 61.23 40.75 36.88 17.67 6.00 19.89 16 ER1d ExonRegion 0 3.77 9.00 24.76 22.46 5.85 23.24 8.09 19.58 20.48 15.65 7.66 0.00 1.47 7.47 5.89 7.23 6.01 30.17 18.40 10.43 10.53 3.16 12.65 17 E1_Da KnownBoundary 0 6.08 2.96 12.71 9.19 0.00 0.00 0.00 4.19 1.10 4.24 2.68 0.00 0.00 3.00 9.39 0.00 3.83 11.11 19.48 2.94 2.97 0.00 3.50 18 E1a_E1e KnownJunction 0 16.89 21.11 53.96 72.82 16.55 27.20 6.27 81.04 82.70 64.15 29.17 0.00 13.64 10.77 15.08 11.02 37.77 159.55 102.21 59.51 8.46 10.96 23.13 19 E1_Ae KnownBoundary 0 0.00 17.23 16.50 18.35 0.00 17.38 5.87 16.14 28.04 8.92 7.05 0.00 0.00 5.47 4.45 7.09 8.79 44.11 32.10 23.39 8.03 0.00 8.11 20 ER1e ExonRegion 0 6.35 16.27 15.93 12.27 5.35 17.42 1.32 8.64 7.41 8.03 17.40 0.00 0.00 9.74 20.31 5.94 13.20 22.17 27.08 12.77 14.32 2.08 2.94 21 ER1f ExonRegion 0 2.92 12.78 11.99 8.73 2.74 14.32 1.29 8.35 4.56 6.03 13.99 0.00 0.00 5.30 11.47 5.94 8.25 15.27 10.92 9.12 9.02 1.14 0.56 22 E1_Db NovelBoundary 0 6.67 14.54 14.37 25.50 6.71 20.67 7.42 29.49 26.74 27.18 9.95 0.00 6.49 4.77 13.97 6.58 17.67 45.97 17.22 19.11 7.97 5.57 7.51 23 E1b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1c_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1g ExonRegion 0 2.12 2.03 6.13 2.73 0.00 3.67 0.00 5.19 0.00 2.29 5.80 0.00 0.00 0.00 0.00 2.97 0.00 5.54 0.00 0.00 3.31 0.00 0.00 26 E2_Aa NovelBoundary 0 74.90 35.06 68.45 131.98 43.80 61.95 40.01 116.69 90.77 119.64 35.06 5.85 7.95 20.66 19.16 35.12 35.34 134.18 69.93 61.81 12.48 13.78 23.47 27 ER2a ExonRegion 0 2.94 1.61 0.00 0.00 0.00 1.47 0.26 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.63 0.71 0.00 0.00 0.00 28 E2_Da NovelBoundary 0 31.93 69.53 60.76 101.52 14.69 45.43 29.10 70.15 59.09 68.77 26.53 6.30 0.00 14.36 15.20 4.36 8.51 78.02 76.43 54.90 8.09 8.33 31.41 29 E2a_E3c KnownJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 30 ER3a ExonRegion 0 0.00 0.00 2.40 1.91 0.00 2.79 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 5.11 1.55 0.00 0.00 2.29 1.53 0.00 0.00 0.94 31 ER3b ExonRegion 0 0.71 0.68 5.72 3.63 0.00 6.72 1.32 5.76 0.00 0.76 1.29 0.00 0.00 0.00 5.80 3.96 0.00 1.85 3.19 2.84 0.73 0.00 2.94 32 ER3c ExonRegion 0 4.74 3.36 11.31 10.33 0.76 11.59 2.25 7.51 6.72 7.75 7.82 1.12 0.00 2.75 4.60 4.68 1.67 15.04 8.51 2.56 2.95 2.82 4.80 33 E3_Da KnownBoundary 0 2.96 5.33 14.46 12.99 0.00 4.66 0.00 9.12 4.02 6.69 8.48 0.00 0.00 2.41 4.45 0.00 3.83 3.69 0.00 5.88 3.03 0.00 3.50 34 E3_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E3b_E5a KnownJunction 0 3.78 0.00 11.15 9.02 0.00 0.00 4.20 3.86 1.79 2.42 4.53 0.00 0.00 0.00 0.00 0.00 8.51 6.38 9.41 0.00 0.00 0.00 7.94 36 E3b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E3_Dc KnownBoundary 0 3.48 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.22 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 4.52 0.00 0.00 0.00 0.00 38 E3c_E5b KnownJunction 0 3.63 0.00 3.13 14.85 4.16 5.51 2.16 4.48 7.15 5.40 7.05 0.00 0.00 0.00 0.00 3.93 0.00 8.46 8.94 8.63 2.41 2.45 3.41 39 ER3d ExonRegion 0 12.70 4.07 23.96 27.26 1.49 19.56 5.30 12.10 12.49 15.29 19.33 0.00 0.00 9.20 6.12 2.97 4.77 18.48 26.90 20.09 3.92 3.94 9.14 40 ER3e ExonRegion 0 2.12 0.00 6.13 5.45 0.00 7.34 1.32 1.73 4.94 6.88 5.80 0.00 0.00 0.00 5.80 2.97 3.30 5.54 6.37 4.26 2.20 0.00 0.00 41 ER3f ExonRegion 0 0.59 0.00 0.84 0.26 0.00 0.00 0.54 1.05 1.43 2.20 1.30 0.00 0.00 0.00 1.69 0.00 0.00 5.54 5.99 0.17 0.00 0.00 0.00 42 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER5a ExonRegion 0 8.47 4.07 20.22 24.53 0.00 18.34 5.96 11.23 6.79 9.18 13.53 0.00 0.00 7.31 1.45 4.46 4.95 17.55 33.45 19.15 3.31 4.17 8.81 45 ER5b ExonRegion 0 9.20 5.24 21.21 27.55 3.50 16.90 4.57 15.75 12.83 20.01 10.36 1.07 3.80 6.42 4.09 6.22 2.91 36.32 31.65 12.24 5.07 5.28 7.11 46 E5_Da NovelBoundary 0 8.82 0.00 19.99 17.75 7.22 8.63 4.24 11.67 6.89 9.89 14.11 0.00 0.00 6.53 4.82 3.33 0.00 23.75 18.45 2.49 0.00 2.51 6.66 47 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 E5c_E6a KnownJunction 0 27.12 9.47 26.20 45.98 3.40 29.59 6.76 16.80 24.59 17.76 16.00 0.00 0.00 9.24 4.45 8.12 4.77 36.73 3.86 21.03 2.66 5.08 7.51 49 ER5c ExonRegion 0 21.17 4.47 29.90 35.16 2.68 22.74 3.97 15.56 21.00 14.68 13.14 4.33 4.69 10.39 8.70 7.73 4.62 35.11 16.56 14.89 2.20 5.83 11.75 50 ER5d ExonRegion 0 21.17 4.07 28.18 35.09 2.68 23.38 3.97 15.99 21.61 16.06 9.66 2.16 0.00 8.53 5.08 5.94 6.60 34.18 17.52 15.96 2.20 6.25 7.34 51 ER6a ExonRegion 0 15.68 6.05 26.90 34.25 0.62 23.84 3.36 14.18 24.99 16.56 17.05 3.77 0.00 5.83 3.20 11.05 6.01 26.82 17.40 20.84 5.37 6.25 6.55 52 E6_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E6a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E6_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER6b ExonRegion 0 10.23 7.80 25.73 30.44 0.00 20.17 7.06 13.83 23.88 22.17 22.23 4.33 0.00 3.52 3.38 8.92 7.70 16.63 28.14 13.12 14.32 5.56 13.21 56 ER6c ExonRegion 0 6.11 8.03 19.80 28.61 4.54 23.33 4.47 23.72 17.08 25.86 14.17 2.00 0.00 5.61 4.36 7.96 6.57 16.20 22.55 6.59 7.53 1.96 18.62 57 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E6c_E7a KnownJunction 0 38.97 20.79 24.54 61.50 11.80 39.52 6.09 32.53 23.67 28.21 36.06 12.60 0.00 9.24 13.35 15.12 3.93 35.53 46.21 11.76 24.65 0.00 20.15 59 ER6d ExonRegion 0 14.82 8.13 22.06 53.15 8.03 34.84 3.97 32.84 22.23 28.67 25.13 8.66 0.00 16.24 8.70 20.80 9.90 20.33 28.67 12.77 19.83 0.00 26.43 60 ER7a ExonRegion 0 10.37 15.45 24.82 48.48 9.51 27.26 9.22 34.31 25.99 29.48 19.79 2.40 0.00 8.63 9.47 7.37 6.63 40.25 21.85 13.50 11.60 4.10 17.28 61 E7_Ab KnownBoundary 0 39.04 14.80 54.76 101.59 12.31 96.71 27.07 90.81 89.18 114.00 25.32 6.30 0.00 19.60 31.89 10.77 17.11 145.63 152.10 54.78 38.55 9.06 48.91 62 ER7b ExonRegion 0 13.95 13.00 28.60 51.69 7.84 45.68 7.02 36.20 19.96 24.88 20.02 7.50 4.27 15.66 19.32 19.64 9.20 35.40 47.21 14.59 15.03 4.32 20.61 63 E7a_E8a KnownJunction 0 40.67 32.82 24.27 74.38 7.22 32.82 1.94 32.16 20.63 25.36 17.64 6.00 0.00 16.54 20.40 22.81 4.39 22.59 65.13 20.26 8.96 5.20 24.76 64 E7a_E9b NovelJunction 0 0.00 0.00 0.00 2.00 0.00 15.79 1.99 6.41 6.45 0.00 5.16 0.00 0.00 0.00 6.30 0.00 0.00 11.40 0.00 0.00 2.66 0.00 0.00 65 ER8a ExonRegion 0 42.54 18.34 29.19 67.58 11.96 42.03 11.86 30.10 22.23 18.80 27.14 2.97 1.84 10.86 23.10 7.98 5.11 35.58 49.03 22.49 18.28 8.21 24.88 66 E8_Da KnownBoundary 0 35.12 14.01 34.80 73.98 17.40 20.39 15.24 27.60 14.26 19.10 11.74 0.00 0.00 7.12 13.35 0.00 4.21 38.47 31.44 22.43 23.17 2.39 14.43 67 E8a_E9b KnownJunction 0 10.74 0.00 7.33 2.06 0.00 2.90 0.00 2.34 7.96 0.00 7.21 0.00 6.82 0.00 5.44 0.00 0.00 11.77 4.42 3.07 0.00 0.00 0.00 68 ER8b ExonRegion 0 13.00 9.92 24.02 41.85 8.29 18.52 3.03 28.60 12.55 10.57 6.05 0.00 0.10 3.16 3.41 0.39 4.46 25.10 18.34 14.12 8.28 6.66 12.78 69 E8_Db NovelBoundary 0 23.34 15.79 34.03 32.53 15.37 25.38 6.09 16.68 17.42 15.39 9.32 0.00 0.00 0.00 13.35 0.00 4.21 23.26 27.67 12.02 12.60 12.43 28.60 70 E8b_E9a KnownJunction 0 0.00 0.00 1.63 4.13 0.00 8.01 0.00 7.85 1.27 0.00 0.00 0.00 0.00 4.47 0.00 3.67 4.02 1.74 4.24 3.26 2.47 2.76 8.19 71 E8b_E9b KnownJunction 0 3.70 12.83 5.06 1.83 4.33 2.73 0.00 5.96 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 3.00 3.50 72 I8 Intron 0 10.24 6.81 13.60 18.15 1.99 3.41 1.97 8.63 6.17 6.36 9.35 0.00 3.18 0.50 5.97 0.00 2.46 11.96 17.79 11.88 7.38 3.10 2.19 73 I8_SR1 SilentIntronRegion 0 11.61 7.67 15.51 20.77 2.42 3.76 2.13 8.99 7.00 7.03 10.54 0.00 3.44 0.60 6.98 0.00 2.98 14.14 19.93 13.95 8.74 3.28 2.65 74 E9_Aa NovelBoundary 0 3.26 3.16 28.92 43.58 20.03 22.88 5.87 21.85 21.73 16.73 7.11 0.00 0.00 7.42 0.00 7.95 4.21 22.97 50.07 28.44 8.59 5.82 0.00 75 ER9a ExonRegion 0 25.18 9.43 19.69 30.69 8.58 16.28 4.91 18.09 19.66 21.93 6.07 0.00 0.16 10.33 16.56 7.64 5.58 31.16 44.27 21.79 6.88 20.33 12.81 76 E9_Ab KnownBoundary 0 25.04 12.04 42.78 57.83 20.80 19.48 11.22 39.43 26.68 45.85 9.58 0.00 0.00 4.94 8.90 12.56 11.78 41.70 31.53 12.34 19.89 24.92 16.82 77 ER9b ExonRegion 0 9.72 13.18 43.21 50.97 6.74 25.29 6.89 55.93 27.66 47.08 10.02 0.97 1.63 9.86 20.15 16.43 11.39 24.10 25.30 18.55 12.56 13.57 18.45 78 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 E10_Aa NovelBoundary 0 3.04 5.92 18.95 13.05 26.99 5.79 5.92 15.81 23.67 27.64 5.00 6.30 0.00 9.71 13.35 8.72 0.00 90.29 66.45 42.19 0.00 11.88 13.06 80 ER10a ExonRegion 0 13.80 12.67 35.17 62.95 11.12 39.62 4.84 62.61 18.00 43.99 14.32 1.28 5.38 8.93 12.42 15.74 8.74 25.84 49.22 22.55 13.77 17.20 26.37 81 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 ER11a ExonRegion 0 23.84 8.10 19.02 23.64 4.19 11.07 4.57 23.93 14.88 30.17 16.59 1.02 4.19 4.42 9.35 6.64 10.14 21.18 43.08 9.75 10.78 7.97 7.61 83 E11_Da KnownBoundary 0 19.41 12.04 23.36 32.53 11.97 12.72 8.26 42.76 49.62 68.36 22.74 12.60 13.96 6.89 6.30 0.00 13.37 96.71 29.27 17.71 5.07 3.12 14.94 84 ER11b ExonRegion 0 3.31 0.00 7.60 6.22 0.95 4.90 1.18 9.61 5.16 11.03 4.40 0.00 0.51 0.42 0.16 0.00 1.36 7.57 0.00 2.97 4.86 0.03 1.85 85 ER11c ExonRegion 0 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00